Decreased epigenetic age of PBMCs from Italian semi-supercentenarians and their offspring

Given the dramatic increase in ageing populations, it is of great importance to understand the genetic and molecular determinants of healthy ageing and longevity. Semi-supercentenarians (subjects who reached an age of 105-109 years) arguably represent the gold standard of successful human ageing because they managed to avoid or postpone the onset of major age-related diseases. Relatively few studies have looked at epigenetic determinants of extreme longevity in humans. Here we test whether families with extreme longevity are epigenetically distinct from controls according to an epigenetic biomarker of ageing which is known as “epigenetic clock”. We analyze the DNA methylation levels of peripheral blood mononuclear cells (PBMCs) from Italian families constituted of 82 semi-supercentenarians (mean age: 105.6 ± 1.6 years), 63 semi-supercentenarians' offspring (mean age: 71.8 ± 7.8 years), and 47 age-matched controls (mean age: 69.8 ± 7.2 years). We demonstrate that the offspring of semi-supercentenarians have a lower epigenetic age than age-matched controls (age difference=5.1 years, p=0.00043) and that centenarians are younger (8.6 years) than expected based on their chronological age. By contrast, no significant difference could be observed for estimated blood cell counts (such as naïve or exhausted cytotoxic T cells or helper T cells). Future studies will be needed to replicate these findings in different populations and to extend them to other tissues. Overall, our results suggest that epigenetic processes might play a role in extreme longevity and healthy human ageing.

[1]  S. Horvath,et al.  Increased epigenetic age and granulocyte counts in the blood of Parkinson's disease patients , 2015, Aging.

[2]  M. Levine,et al.  Epigenetic age of the pre-frontal cortex is associated with neuritic plaques, amyloid load, and Alzheimer’s disease related cognitive functioning , 2015, Aging.

[3]  C. Franceschi,et al.  Plasma N-Glycome Signature of Down Syndrome. , 2015, Journal of proteome research.

[4]  D. Mari,et al.  Stochastic epigenetic mutations (DNA methylation) increase exponentially in human aging and correlate with X chromosome inactivation skewing in females , 2015, Aging.

[5]  M. Suematsu,et al.  Inflammation, But Not Telomere Length, Predicts Successful Ageing at Extreme Old Age: A Longitudinal Study of Semi-supercentenarians , 2015, EBioMedicine.

[6]  S. Horvath,et al.  HIV-1 Infection Accelerates Age According to the Epigenetic Clock , 2015, The Journal of infectious diseases.

[7]  Jennifer S. Woo,et al.  The cerebellum ages slowly according to the epigenetic clock , 2015, Aging.

[8]  Michael C O'Donovan,et al.  Methylomic trajectories across human fetal brain development , 2015, Genome research.

[9]  Steve Horvath,et al.  Accelerated epigenetic aging in Down syndrome , 2015, Aging cell.

[10]  S. Horvath,et al.  DNA methylation age of blood predicts all-cause mortality in later life , 2015, Genome Biology.

[11]  Steve Horvath,et al.  The epigenetic clock is correlated with physical and cognitive fitness in the Lothian Birth Cohort 1936 , 2015, International journal of epidemiology.

[12]  Steve Horvath,et al.  Obesity accelerates epigenetic aging of human liver , 2014, Proceedings of the National Academy of Sciences.

[13]  Vladimir Vacic,et al.  Disease variants in genomes of 44 centenarians , 2014, Molecular genetics & genomic medicine.

[14]  W. Wayt Gibbs Biomarkers and ageing: The clock-watcher , 2014, Nature.

[15]  Jutta Gampe,et al.  Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90 years of age , 2014, Human molecular genetics.

[16]  Thomas W. Mühleisen,et al.  Aging of blood can be tracked by DNA methylation changes at just three CpG sites , 2014, Genome Biology.

[17]  G. Castellani,et al.  Identification of a DNA methylation signature in blood cells from persons with Down Syndrome , 2014, Aging.

[18]  S. Rampelli,et al.  Functional metagenomic profiling of intestinal microbiome in extreme ageing , 2013, Aging.

[19]  S. Horvath DNA methylation age of human tissues and cell types , 2013, Genome Biology.

[20]  D. Mari,et al.  Role of epigenetics in human aging and longevity: genome-wide DNA methylation profile in centenarians and centenarians’ offspring , 2013, AGE.

[21]  D. Absher,et al.  Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape , 2013, Genome Biology.

[22]  P. Sebastiani,et al.  Meta-analysis of genetic variants associated with human exceptional longevity , 2013, Aging.

[23]  Ulf Gyllensten,et al.  Continuous Aging of the Human DNA Methylome Throughout the Human Lifespan , 2013, PloS one.

[24]  R. Testa,et al.  Centenarians as super-controls to assess the biological relevance of genetic risk factors for common age-related diseases: A proof of principle on type 2 diabetes , 2013, Aging.

[25]  Thomas Hankemeier,et al.  Lipidomics of familial longevity , 2013, Aging cell.

[26]  D. Mari,et al.  Does the longevity of one or both parents influence the health status of their offspring? , 2013, Experimental Gerontology.

[27]  E. Susser,et al.  Telomeres shorten at equivalent rates in somatic tissues of adults , 2013, Nature Communications.

[28]  P. Brigidi,et al.  Metabolic Signatures of Extreme Longevity in Northern Italian Centenarians Reveal a Complex Remodeling of Lipids, Amino Acids, and Gut Microbiota Metabolism , 2013, PloS one.

[29]  C. Franceschi,et al.  N-glycomic biomarkers of biological aging and longevity: A link with inflammaging , 2013, Ageing Research Reviews.

[30]  T. Ideker,et al.  Genome-wide methylation profiles reveal quantitative views of human aging rates. , 2013, Molecular cell.

[31]  G. Castellani,et al.  Methylation of ELOVL2 gene as a new epigenetic marker of age , 2012, Aging cell.

[32]  Francesco Marabita,et al.  A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data , 2012, Bioinform..

[33]  D. Mari,et al.  Metabolic syndrome in the offspring of centenarians: focus on prevalence, components, and adipokines , 2012, AGE.

[34]  S. Horvath,et al.  Aging effects on DNA methylation modules in human brain and blood tissue , 2012, Genome Biology.

[35]  D. Mari,et al.  Low circulating IGF-I bioactivity is associated with human longevity: Findings in centenarians’ offspring , 2012, Aging.

[36]  Devin C. Koestler,et al.  DNA methylation arrays as surrogate measures of cell mixture distribution , 2012, BMC Bioinformatics.

[37]  G. Satten,et al.  Age-associated DNA methylation in pediatric populations. , 2012, Genome research.

[38]  J. Fischer,et al.  Protein, lipid, and hematological biomarkers in centenarians: definitions, interpretation and relationships with health. , 2012, Maturitas.

[39]  J. Kleinman,et al.  DNA methylation signatures in development and aging of the human prefrontal cortex. , 2012, American journal of human genetics.

[40]  W. Wagner,et al.  Epigenetic-aging-signature to determine age in different tissues , 2011, Aging.

[41]  Steve Horvath,et al.  Epigenetic Predictor of Age , 2011, PloS one.

[42]  P. Deyn,et al.  Serum N-glycan profile shift during human ageing , 2010, Experimental Gerontology.

[43]  M. Gill,et al.  Neurologic disease burden in treated HIV/AIDS predicts survival , 2010, Neurology.

[44]  P. Laird,et al.  Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer. , 2010, Genome research.

[45]  T. Spector,et al.  Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains. , 2010, Genome research.

[46]  Candyce Kroenke,et al.  Analyses and comparisons of telomerase activity and telomere length in human T and B cells: insights for epidemiology of telomere maintenance. , 2010, Journal of immunological methods.

[47]  C. Caruso,et al.  B cells compartment in centenarian offspring and old people. , 2010, Current pharmaceutical design.

[48]  B. Christensen,et al.  Aging and Environmental Exposures Alter Tissue-Specific DNA Methylation Dependent upon CpG Island Context , 2009, PLoS genetics.

[49]  M. Surks,et al.  Extreme longevity is associated with increased serum thyrotropin. , 2009, The Journal of clinical endocrinology and metabolism.

[50]  Joel Schwartz,et al.  Decline in genomic DNA methylation through aging in a cohort of elderly subjects , 2009, Mechanisms of Ageing and Development.

[51]  G. Church,et al.  Meta-analysis of age-related gene expression profiles identifies common signatures of aging , 2009, Bioinform..

[52]  M. Memo,et al.  Why do centenarians escape or postpone cancer? The role of IGF-1, inflammation and p53 , 2009, Cancer Immunology, Immunotherapy.

[53]  Dawn Mazzatti,et al.  Aging of the immune system as a prognostic factor for human longevity. , 2008, Physiology.

[54]  C. Sirolla,et al.  Combination of biomarkers to predict mortality in elderly patients with myocardial infarction , 2008, Mechanisms of Ageing and Development.

[55]  R. Contreras,et al.  N-glycomic changes in serum proteins during human aging. , 2007, Rejuvenation research.

[56]  C. Franceschi Inflammaging as a major characteristic of old people: can it be prevented or cured? , 2007, Nutrition reviews.

[57]  A. Owen,et al.  AGEMAP: A Gene Expression Database for Aging in Mice , 2007, PLoS genetics.

[58]  AL Gruver,et al.  Immunosenescence of ageing , 2007, The Journal of pathology.

[59]  C. Franceschi,et al.  The unusual genetics of human longevity. , 2006, Science of aging knowledge environment : SAGE KE.

[60]  Kevin G Becker,et al.  Transcriptional Profiling of Aging in Human Muscle Reveals a Common Aging Signature , 2006, PLoS genetics.

[61]  C. Franceschi,et al.  Reduced Expression Levels of the Senescence Biomarker Clusterin/Apolipoprotein J in Lymphocytes from Healthy Centenarians , 2006, Annals of the New York Academy of Sciences.

[62]  J. Vaupel,et al.  No Association Between Telomere Length and Survival Among the Elderly and Oldest Old , 2006, Epidemiology.

[63]  Petr Klemera,et al.  A new approach to the concept and computation of biological age , 2006, Mechanisms of Ageing and Development.

[64]  M. Prelog Aging of the immune system: a risk factor for autoimmunity? , 2006, Autoimmunity reviews.

[65]  Lingli Wang,et al.  A Transcriptional Profile of Aging in the Human Kidney , 2004, PLoS biology.

[66]  G. Rennert,et al.  Clinical Phenotype of Families with Longevity , 2004, Journal of the American Geriatrics Society.

[67]  C. Franceschi,et al.  Low vitamin D status, high bone turnover, and bone fractures in centenarians. , 2003, The Journal of clinical endocrinology and metabolism.

[68]  S. Ozanne,et al.  Ageing and telomeres: a study into organ- and gender-specific telomere shortening. , 2003, Nucleic acids research.

[69]  T. Perls,et al.  Morbidity profiles of centenarians: survivors, delayers, and escapers. , 2003, The journals of gerontology. Series A, Biological sciences and medical sciences.

[70]  C. Franceschi,et al.  Inflamm‐aging: An Evolutionary Perspective on Immunosenescence , 2000 .

[71]  C. Franceschi,et al.  Shortage of circulating naive CD8(+) T cells provides new insights on immunodeficiency in aging. , 2000, Blood.

[72]  C. Franceschi,et al.  Biomarkers of immunosenescence within an evolutionary perspective: the challenge of heterogeneity and the role of antigenic load , 1999, Experimental Gerontology.

[73]  G. Pawelec,et al.  Age-related changes in the expression of CD95 (APO1/FAS) on blood lymphocytes☆ , 1999, Experimental Gerontology.

[74]  C. Franceschi,et al.  Telomere length in fibroblasts and blood cells from healthy centenarians. , 1999, Experimental cell research.

[75]  C. Franceschi,et al.  Expansion of cytotoxic CD8+ CD28− T cells in healthy ageing people, including centenarians , 1996, Immunology.

[76]  M. Laakso,et al.  Insulin Action and Age: European Group for the Study of Insulin Resistance (EGIR) , 1996, Diabetes.

[77]  R. Effros,et al.  Decline in CD28+ T cells in centenarians and in long-term T cell cultures: A possible cause for both in vivo and in vitro immunosenescence , 1994, Experimental Gerontology.

[78]  E. Blackburn,et al.  A tandemly repeated sequence at the termini of the extrachromosomal ribosomal RNA genes in Tetrahymena. , 1978, Journal of molecular biology.

[79]  J. Vaupel,et al.  University of Southern Denmark DNA methylation age is associated with mortality in a longitudinal Danish twin study , 2015 .

[80]  Aging Cell , 2022 .