A folded conformation of MukBEF and cohesin
暂无分享,去创建一个
K. Nasmyth | J. Rappsilber | J. Löwe | Francis J. O’Reilly | Ludwig R. Sinn | Frank Bürmann | Byung-Gil Lee | Bin Hu | Thane Than | S. Yatskevich
[1] A. Kruse,et al. In Vivo Evidence for ATPase-Dependent DNA Translocation by the Bacillus subtilis SMC Condensin Complex. , 2018, Molecular cell.
[2] D. Panne,et al. Structural basis for Scc3-dependent cohesin recruitment to chromatin , 2018, eLife.
[3] K. Nasmyth,et al. Scc2 Is a Potent Activator of Cohesin’s ATPase that Promotes Loading by Binding Scc1 without Pds5 , 2018, Molecular cell.
[4] Lutz Fischer,et al. In-Search Assignment of Monoisotopic Peaks Improves the Identification of Cross-Linked Peptides , 2018, bioRxiv.
[5] A. Barducci,et al. DNA-segment-capture model for loop extrusion by structural maintenance of chromosome (SMC) protein complexes , 2018, bioRxiv.
[6] M. Yanagida,et al. Suppressor mutation analysis combined with 3D modeling explains cohesin’s capacity to hold and release DNA , 2018, Proceedings of the National Academy of Sciences.
[7] Cees Dekker,et al. Real-time imaging of DNA loop extrusion by condensin , 2018, Science.
[8] A. Cournac,et al. Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins , 2018, Cell.
[9] D. Sherratt,et al. MukB ATPases are regulated independently by the N- and C-terminal domains of MukF kleisin , 2018, eLife.
[10] Shveta Bisht,et al. Structural Basis for a Safety-Belt Mechanism That Anchors Condensin to Chromosomes , 2017, Cell.
[11] K. Nasmyth,et al. The Cohesin Ring Uses Its Hinge to Organize DNA Using Non-topological as well as Topological Mechanisms , 2017, Cell.
[12] C. Wyman,et al. The bacterial condensin MukB compacts DNA by sequestering supercoils and stabilizing topologically isolated loops , 2017, The Journal of Biological Chemistry.
[13] B. Oh,et al. Structure of Full-Length SMC and Rearrangements Required for Chromosome Organization , 2017, Molecular cell.
[14] Cees Dekker,et al. The condensin complex is a mechanochemical motor that translocates along DNA , 2017, Science.
[15] J. Rappsilber,et al. Optimizing the Parameters Governing the Fragmentation of Cross-Linked Peptides in a Tribrid Mass Spectrometer , 2017, Analytical chemistry.
[16] J. Rappsilber,et al. Quirks of Error Estimation in Cross-Linking/Mass Spectrometry , 2017, Analytical chemistry.
[17] S. Gruber,et al. Tuned SMC Arms Drive Chromosomal Loading of Prokaryotic Condensin , 2017, Molecular cell.
[18] D. Agard,et al. MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy , 2017, Nature Methods.
[19] M. Laub,et al. CHROMOSOMES: Bacillus subtilis SMC complexes juxtapose chromosome arms as they travel from origin to terminus , 2017 .
[20] L. Pearl,et al. Specialized interfaces of Smc5/6 control hinge stability and DNA association , 2017, Nature Communications.
[21] M. Singleton,et al. Structure of the cohesin loader Scc2 , 2017, Nature Communications.
[22] K. Nasmyth,et al. Evolution of condensin and cohesin complexes driven by replacement of Kite by Hawk proteins , 2017, Current Biology.
[23] Rafael Fernandez-Leiro,et al. A pipeline approach to single-particle processing in RELION , 2016, bioRxiv.
[24] J. Peters,et al. Topology and structure of an engineered human cohesin complex bound to Pds5B , 2016, Nature Communications.
[25] O. Song,et al. ATP‐dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex , 2016, The EMBO journal.
[26] D. G. Gibson,et al. Design and synthesis of a minimal bacterial genome , 2016, Science.
[27] Yan Li,et al. Structure of the Pds5-Scc1 Complex and Implications for Cohesin Function. , 2016, Cell reports.
[28] T. Hirano,et al. Condensin-Based Chromosome Organization from Bacteria to Vertebrates , 2016, Cell.
[29] K. Nasmyth,et al. Crystal Structure of the Cohesin Gatekeeper Pds5 and in Complex with Kleisin Scc1 , 2016, Cell reports.
[30] S. Gruber,et al. Control of Smc Coiled Coil Architecture by the ATPase Heads Facilitates Targeting to Chromosomal ParB/parS and Release onto Flanking DNA , 2016, Cell reports.
[31] C. Dekker,et al. Condensin Smc2-Smc4 Dimers Are Flexible and Dynamic , 2016, Cell reports.
[32] D. Sherratt,et al. MatP regulates the coordinated action of topoisomerase IV and MukBEF in chromosome segregation , 2016, Nature Communications.
[33] José A. Dianes,et al. 2016 update of the PRIDE database and its related tools , 2016, Nucleic Acids Res..
[34] Lutz Fischer,et al. A Study into the Collision-induced Dissociation (CID) Behavior of Cross-Linked Peptides , 2015, Molecular & Cellular Proteomics.
[35] F. Uhlmann,et al. DNA Entry into and Exit out of the Cohesin Ring by an Interlocking Gate Mechanism , 2015, Cell.
[36] J. Palecek,et al. Kite Proteins: a Superfamily of SMC/Kleisin Partners Conserved Across Bacteria, Archaea, and Eukaryotes. , 2015, Structure.
[37] N. Grigorieff,et al. CTFFIND4: Fast and accurate defocus estimation from electron micrographs , 2015, bioRxiv.
[38] Vincent M. Waldman,et al. Structural mapping of the coiled‐coil domain of a bacterial condensin and comparative analyses across all domains of life suggest conserved features of SMC proteins , 2015, Proteins.
[39] B. Oh,et al. SMC condensin entraps chromosomal DNA by an ATP hydrolysis dependent loading mechanism in Bacillus subtilis , 2015, eLife.
[40] K. Miyazaki. Molecular engineering of a PheS counterselection marker for improved operating efficiency in Escherichia coli. , 2015, BioTechniques.
[41] Nam Ki Lee,et al. Molecular Basis for SMC Rod Formation and Its Dissolution upon DNA Binding , 2015, Molecular cell.
[42] Ruedi Aebersold,et al. Characterization of a DNA exit gate in the human cohesin ring , 2014, Science.
[43] Kim Nasmyth,et al. Closing the cohesin ring: Structure and function of its Smc3-kleisin interface , 2014, Science.
[44] W. Baumeister,et al. Volta potential phase plate for in-focus phase contrast transmission electron microscopy , 2014, Proceedings of the National Academy of Sciences.
[45] J. Berger,et al. Structural basis for the MukB‐topoisomerase IV interaction and its functional implications in vivo , 2013, The EMBO journal.
[46] Randy J. Read,et al. Phaser.MRage: automated molecular replacement , 2013, Acta crystallographica. Section D, Biological crystallography.
[47] K. Nasmyth,et al. Pds5 promotes and protects cohesin acetylation , 2013, Proceedings of the National Academy of Sciences.
[48] Philip R. Evans,et al. How good are my data and what is the resolution? , 2013, Acta crystallographica. Section D, Biological crystallography.
[49] S. Benkovic,et al. Replication clamps and clamp loaders. , 2013, Cold Spring Harbor perspectives in biology.
[50] B. Oh,et al. An asymmetric SMC–kleisin bridge in prokaryotic condensin , 2013, Nature Structural &Molecular Biology.
[51] D. Sherratt,et al. In Vivo Architecture and Action of Bacterial Structural Maintenance of Chromosome Proteins , 2012, Science.
[52] John F. Marko,et al. Self-organization of domain structures by DNA-loop-extruding enzymes , 2012, Nucleic acids research.
[53] Natalie I. Tasman,et al. A Cross-platform Toolkit for Mass Spectrometry and Proteomics , 2012, Nature Biotechnology.
[54] P. Zwart,et al. Towards automated crystallographic structure refinement with phenix.refine , 2012, Acta crystallographica. Section D, Biological crystallography.
[55] Vincent M. Waldman,et al. A repeated coiled-coil interruption in the Escherichia coli condensin MukB. , 2011, Journal of molecular biology.
[56] C. Haering,et al. Condensin structures chromosomal DNA through topological links , 2011, Nature Structural &Molecular Biology.
[57] N. Pannu,et al. REFMAC5 for the refinement of macromolecular crystal structures , 2011, Acta crystallographica. Section D, Biological crystallography.
[58] Randy J. Read,et al. Overview of the CCP4 suite and current developments , 2011, Acta crystallographica. Section D, Biological crystallography.
[59] T. Richmond,et al. Robots, pipelines, polyproteins: Enabling multiprotein expression in prokaryotic and eukaryotic cells , 2011, Journal of Structural Biology.
[60] K. Nasmyth,et al. ATP Hydrolysis Is Required for Relocating Cohesin from Sites Occupied by Its Scc2/4 Loading Complex , 2011, Current Biology.
[61] Tıp. In-Gel Digestion , 2010 .
[62] Yongchao Liu,et al. MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities , 2010, Bioinform..
[63] B. Oh,et al. Crystal structure of the MukB hinge domain with coiled‐coil stretches and its functional implications , 2010, Proteins.
[64] G. Witte,et al. Structure and DNA binding activity of the mouse condensin hinge domain highlight common and diverse features of SMC proteins , 2010, Nucleic acids research.
[65] P. Cramer,et al. Architecture of the RNA polymerase II–TFIIF complex revealed by cross-linking and mass spectrometry , 2010, EMBO Journal.
[66] J. Berger,et al. The crystal structure of the hinge domain of the Escherichia coli structural maintenance of chromosomes protein MukB. , 2010, Journal of molecular biology.
[67] Keehyoung Joo,et al. Structural Studies of a Bacterial Condensin Complex Reveal ATP-Dependent Disruption of Intersubunit Interactions , 2009, Cell.
[68] Carola Engler,et al. A One Pot, One Step, Precision Cloning Method with High Throughput Capability , 2008, PloS one.
[69] T. Richmond,et al. MultiBac: Multigene Baculovirus‐Based Eukaryotic Protein Complex Production , 2008, Current protocols in protein science.
[70] Mona Singh,et al. Predicting functionally important residues from sequence conservation , 2007, Bioinform..
[71] Trisha N Davis,et al. In vivo analysis of cohesin architecture using FRET in the budding yeast Saccharomyces cerevisiae , 2007, The EMBO journal.
[72] T. Hirano,et al. Reconstitution and subunit geometry of human condensin complexes , 2007, The EMBO journal.
[73] M. Mann,et al. In-gel digestion for mass spectrometric characterization of proteins and proteomes , 2006, Nature Protocols.
[74] Z. M. Petrushenko,et al. Antagonistic Interactions of Kleisins and DNA with Bacterial Condensin MukB* , 2006, Journal of Biological Chemistry.
[75] K. Nasmyth,et al. Evidence that Loading of Cohesin Onto Chromosomes Involves Opening of Its SMC Hinge , 2006, Cell.
[76] N. Costantino,et al. A set of recombineering plasmids for gram-negative bacteria. , 2006, Gene.
[77] Kevin Cowtan,et al. The Buccaneer software for automated model building. 1. Tracing protein chains. , 2006, Acta crystallographica. Section D, Biological crystallography.
[78] Kevin Cowtan,et al. The Buccaneer software for automated model building , 2006 .
[79] Jan Löwe,et al. Robotic nanolitre protein crystallisation at the MRC Laboratory of Molecular Biology. , 2005, Progress in biophysics and molecular biology.
[80] J. Berger,et al. The MukF subunit of Escherichia coli condensin: architecture and functional relationship to kleisins , 2005, The EMBO journal.
[81] F. Studier,et al. Protein production by auto-induction in high density shaking cultures. , 2005, Protein expression and purification.
[82] Kevin Cowtan,et al. research papers Acta Crystallographica Section D Biological , 2005 .
[83] J. Yates,et al. Nse1, Nse2, and a novel subunit of the Smc5-Smc6 complex, Nse3, play a crucial role in meiosis. , 2004, Molecular biology of the cell.
[84] K. Hopfner,et al. Structural Biochemistry of ATP-Driven Dimerization and DNA-Stimulated Activation of SMC ATPases , 2004, Current Biology.
[85] Kim Nasmyth,et al. Structure and stability of cohesin's Smc1-kleisin interaction. , 2004, Molecular cell.
[86] E. Revenkova,et al. DNA Interaction and Dimerization of Eukaryotic SMC Hinge Domains* , 2004, Journal of Biological Chemistry.
[87] M. Mann,et al. Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. , 2003, Analytical chemistry.
[88] Kim Nasmyth,et al. Molecular architecture of SMC proteins and the yeast cohesin complex. , 2002, Molecular cell.
[89] M. Delorenzi,et al. An HMM model for coiled-coil domains and a comparison with PSSM-based predictions , 2002, Bioinform..
[90] M. Yanagida,et al. Condensin Architecture and Interaction with DNA Regulatory Non-SMC Subunits Bind to the Head of SMC Heterodimer , 2002, Current Biology.
[91] H. Erickson,et al. Condensin and cohesin display different arm conformations with characteristic hinge angles , 2002, The Journal of cell biology.
[92] J. Löwe,et al. Crystal structure of the SMC head domain: an ABC ATPase with 900 residues antiparallel coiled-coil inserted. , 2001, Journal of molecular biology.
[93] H. Niki,et al. Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli , 1999, The EMBO journal.
[94] R. B. Jensen,et al. The Caulobacter crescentus smc gene is required for cell cycle progression and chromosome segregation. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[95] K. Nairz,et al. A Central Role for Cohesins in Sister Chromatid Cohesion, Formation of Axial Elements, and Recombination during Yeast Meiosis , 1999, Cell.
[96] H. Erickson,et al. The Symmetrical Structure of Structural Maintenance of Chromosomes (SMC) and MukB Proteins: Long, Antiparallel Coiled Coils, Folded at a Flexible Hinge , 1998, The Journal of cell biology.
[97] A. Grossman,et al. Characterization of a prokaryotic SMC protein involved in chromosome partitioning. , 1998, Genes & development.
[98] V. Guacci,et al. A Direct Link between Sister Chromatid Cohesion and Chromosome Condensation Revealed through the Analysis of MCD1 in S. cerevisiae , 1997, Cell.
[99] K. Nasmyth,et al. Cohesins: Chromosomal Proteins that Prevent Premature Separation of Sister Chromatids , 1997, Cell.
[100] T. Ogura,et al. Identification of two new genes,mukE andmukF, involved in chromosome partitioning inEscherichia coli , 1996, Molecular and General Genetics MGG.
[101] T. Mitchison,et al. A heterodimeric coiled-coil protein required for mitotic chromosome condensation in vitro , 1994, Cell.
[102] M. Yanagida,et al. Fission yeast cut3 and cut14, members of a ubiquitous protein family, are required for chromosome condensation and segregation in mitosis. , 1994, The EMBO journal.
[103] T. Ogura,et al. E.coli MukB protein involved in chromosome partition forms a homodimer with a rod‐and‐hinge structure having DNA binding and ATP/GTP binding activities. , 1992, The EMBO journal.
[104] T. Ogura,et al. The new gene mukB codes for a 177 kd protein with coiled‐coil domains involved in chromosome partitioning of E. coli. , 1991, The EMBO journal.
[105] U. K. Laemmli,et al. Metaphase chromosome structure: Evidence for a radial loop model , 1979, Cell.
[106] K. Nasmyth,et al. Scc2 Is a Potent Activator of Cohesin’s ATPase that Promotes Loading by Binding Scc1 without Pds5 , 2018, Molecular cell.
[107] K. Nasmyth,et al. Structure and Stability of Cohesin ’ s Smc 1-Kleisin Interaction , 2004 .
[108] K. Nasmyth. THE GENOME : Joining , Resolving , and Separating Sister Chromatids During Mitosis and Meiosis , 2006 .
[109] T. Ogura,et al. Identification of two new genes , 1996 .
[110] W. Wooster,et al. Crystal structure of , 2005 .
[111] C. Coulson,et al. Molecular Architecture , 1953, Nature.
[112] Ballard,et al. Overview of the CCP 4 suite and current developments , 2022 .