PRADA: pipeline for RNA sequencing data analysis
暂无分享,去创建一个
John N. Weinstein | Michael F. Berger | Gad Getz | Siyuan Zheng | Roel G. W. Verhaak | Andrey Sivachenko | Wandaliz Torres-García | Rahulsimham Vegesna | Qianghu Wang | Rong Yao | A. Sivachenko | G. Getz | J. Weinstein | R. Verhaak | M. Berger | Qianghu Wang | Wandaliz Torres‐Garcia | Rahulsimham Vegesna | Siyuan Zheng | Rong Yao | Wandaliz Torres-García
[1] Chris Williams,et al. RNA-SeQC: RNA-seq metrics for quality control and process optimization , 2012, Bioinform..
[2] S. Salzberg,et al. TopHat-Fusion: an algorithm for discovery of novel fusion transcripts , 2011, Genome Biology.
[3] D. Brat,et al. Transforming Fusions of FGFR and TACC Genes in Human Glioblastoma , 2012, Science.
[4] The Cancer Genome Atlas Research Network. COMPREHENSIVE MOLECULAR CHARACTERIZATION OF CLEAR CELL RENAL CELL CARCINOMA , 2013, Nature.
[5] Zachary A. Szpiech,et al. Genotype, haplotype and copy-number variation in worldwide human populations , 2008, Nature.
[6] S. Gabriel,et al. Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. , 2010, Cancer cell.
[7] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[8] Ken Chen,et al. A survey of intragenic breakpoints in glioblastoma identifies a distinct subset associated with poor survival. , 2013, Genes & development.
[9] M. DePristo,et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.
[10] Süleyman Cenk Sahinalp,et al. deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data , 2011, PLoS Comput. Biol..
[11] J. Maguire,et al. Integrative analysis of the melanoma transcriptome. , 2010, Genome research.
[12] Steven J. M. Jones,et al. Comprehensive molecular characterization of clear cell renal cell carcinoma , 2013, Nature.
[13] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .