Multi-locus DNA metabarcoding of zooplankton communities and scat reveal trophic interactions of a generalist predator
暂无分享,去创建一个
R. Constantine | R. Newcomb | J. Zeldis | E. Carroll | R. Gallego | L. Ranjard | H. Ross | M. Sewell | L. Tooman | R. O’Rorke
[1] R. Constantine,et al. Future Directions in Research on Bryde's Whales , 2018, Front. Mar. Sci..
[2] Beth Shapiro,et al. Minimizing polymerase biases in metabarcoding. , 2018, Molecular ecology resources.
[3] R. Constantine,et al. Night-life of Bryde’s whales: ecological implications of resting in a baleen whale , 2018, Behavioral Ecology and Sociobiology.
[4] B. Deagle,et al. Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data? , 2018, bioRxiv.
[5] A. Bowie,et al. Pelagic Iron Recycling in the Southern Ocean: Exploring the Contribution of Marine Animals , 2018, Front. Mar. Sci..
[6] Evan Bolton,et al. Database resources of the National Center for Biotechnology Information , 2017, Nucleic Acids Res..
[7] S. O’Rahilly,et al. The metabolic syndrome- associated small G protein ARL15 plays a role in adipocyte differentiation and adiponectin secretion , 2017, Scientific Reports.
[8] T. Akamatsu,et al. Tread-water feeding of Bryde’s whales , 2017, Current Biology.
[9] N. Shears,et al. Half a century of coastal temperature records reveal complex warming trends in western boundary currents , 2017, Scientific Reports.
[10] A. Friedlaender,et al. Physical speciation and solubility of iron from baleen whale faecal material , 2017 .
[11] Kaitlin E. Frasier,et al. Spatial distribution and dive behavior of Gulf of Mexico Bryde’s whales: potential risk of vessel strikes and fisheries interactions , 2017 .
[12] M. Bunce,et al. Assessing the trophic ecology of top predators across a recolonisation frontier using DNA metabarcoding of diets , 2017 .
[13] Dáithí C. Murray,et al. DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea) , 2017, Ecology and evolution.
[14] N. Stenseth,et al. Interaction between top-down and bottom-up control in marine food webs , 2017, Proceedings of the National Academy of Sciences.
[15] M. Hadfield,et al. Diet selection at three spatial scales: Implications for conservation of an endangered Hawaiian tree snail , 2017 .
[16] N. Schizas,et al. Use of DNA metabarcoding for stomach content analysis in the invasive lionfish Pterois volitans in Puerto Rico , 2016 .
[17] M. Heithaus,et al. Megafaunal Impacts on Structure and Function of Ocean Ecosystems , 2016 .
[18] A. Friedlaender,et al. Kinematic Diversity in Rorqual Whale Feeding Mechanisms , 2016, Current Biology.
[19] N. Knowlton,et al. Censusing marine eukaryotic diversity in the twenty-first century , 2016, Philosophical Transactions of the Royal Society B: Biological Sciences.
[20] Anthony J Richardson,et al. Rethinking the Role of Salps in the Ocean. , 2016, Trends in ecology & evolution.
[21] D. Lodge,et al. Estimating species richness using environmental DNA , 2016, Ecology and evolution.
[22] B. Deagle,et al. Quantitative DNA metabarcoding: improved estimates of species proportional biomass using correction factors derived from control material , 2016, Molecular ecology resources.
[23] Pierre Taberlet,et al. From barcodes to genomes: extending the concept of DNA barcoding , 2016, Molecular ecology.
[24] Yiyuan Li,et al. Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding , 2015, Molecular ecology resources.
[25] D. Edwards,et al. How Should Beta-Diversity Inform Biodiversity Conservation? , 2016, Trends in ecology & evolution.
[26] Matthew A. Barnes,et al. The ecology of environmental DNA and implications for conservation genetics , 2016, Conservation Genetics.
[27] Kristine Bohmann,et al. Tag jumps illuminated – reducing sequence‐to‐sample misidentifications in metabarcoding studies , 2015, Molecular ecology resources.
[28] A. Drummond,et al. Evaluating a multigene environmental DNA approach for biodiversity assessment , 2015, GigaScience.
[29] E. Hazen,et al. Blue whales (Balaenoptera musculus) optimize foraging efficiency by balancing oxygen use and energy gain as a function of prey density , 2015, Science Advances.
[30] P. Taberlet,et al. Metagenome skimming for phylogenetic community ecology: a new era in biodiversity research , 2015, Molecular ecology.
[31] David L. Erickson,et al. DNA metabarcoding illuminates dietary niche partitioning by African large herbivores , 2015, Proceedings of the National Academy of Sciences.
[32] P. Taberlet,et al. DNA metabarcoding diet analysis for species with parapatric vs sympatric distribution: a case study on subterranean rodents , 2015, Heredity.
[33] Nancy Knowlton,et al. DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity , 2015, Proceedings of the National Academy of Sciences.
[34] L. Nøttestad,et al. Recent changes in distribution and relative abundance of cetaceans in the Norwegian Sea and their relationship with potential prey , 2015, Front. Ecol. Evol..
[35] JR Zeldis,et al. Biogeographic and trophic drivers of mesozooplankton distribution on the northeast continental shelf and in Hauraki Gulf, New Zealand , 2015 .
[36] Elizabeth L Clare,et al. Molecular detection of trophic interactions: emerging trends, distinct advantages, significant considerations and conservation applications , 2014, Evolutionary applications.
[37] Daniel P. Costa,et al. Whales as marine ecosystem engineers , 2014 .
[38] B. Deagle,et al. Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias , 2014, Molecular ecology.
[39] P. Taberlet,et al. DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet , 2014, Molecular ecology resources.
[40] D. Speirs,et al. Understanding patterns and processes in models of trophic cascades , 2013, Ecology letters.
[41] Jiajie Zhang,et al. PEAR: a fast and accurate Illumina Paired-End reAd mergeR , 2013, Bioinform..
[42] A. Polanowski,et al. Adélie Penguin Population Diet Monitoring by Analysis of Food DNA in Scats , 2013, PloS one.
[43] Robert C. Edgar,et al. UPARSE: highly accurate OTU sequences from microbial amplicon reads , 2013, Nature Methods.
[44] V. Ranwez,et al. A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents , 2013, Frontiers in Zoology.
[45] Julie A. Jedlicka,et al. Molecular tools reveal diets of insectivorous birds from predator fecal matter , 2013, Conservation Genetics Resources.
[46] M. McKenna,et al. Integrative Approaches to the Study of Baleen Whale Diving Behavior, Feeding Performance, and Foraging Ecology , 2013 .
[47] Margaret A. McManus,et al. Bottom-up regulation of a pelagic community through spatial aggregations , 2012, Biology Letters.
[48] A. Jeffs,et al. Determining the Diet of Larvae of Western Rock Lobster (Panulirus cygnus) Using High-Throughput DNA Sequencing Techniques , 2012, PloS one.
[49] D. Post,et al. Applying stable isotopes to examine food‐web structure: an overview of analytical tools , 2012, Biological reviews of the Cambridge Philosophical Society.
[50] Hongzhe Li,et al. Associating microbiome composition with environmental covariates using generalized UniFrac distances , 2012, Bioinform..
[51] Shane S. Sturrock,et al. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data , 2012, Bioinform..
[52] Eric Coissac,et al. Bioinformatic challenges for DNA metabarcoding of plants and animals , 2012, Molecular ecology.
[53] P. Taberlet,et al. Who is eating what: diet assessment using next generation sequencing , 2012, Molecular ecology.
[54] P. Taberlet,et al. Carnivore diet analysis based on next‐generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan , 2012, Molecular ecology.
[55] S. Lavery,et al. PCR enrichment techniques to identify the diet of predators , 2012, Molecular ecology resources.
[56] P. Legendre,et al. Chapter 7 – Ecological resemblance , 2012 .
[57] E. Pakhomov,et al. Salps in the Lazarev Sea, Southern Ocean: II. Biochemical composition and potential prey value , 2012 .
[58] M. Gall,et al. Phytoplankton biomass and primary production responses to physico-chemical forcing across the northeastern New Zealand continental shelf , 2011 .
[59] D. Lindberg,et al. What Happened to Gray Whales during the Pleistocene? The Ecological Impact of Sea-Level Change on Benthic Feeding Areas in the North Pacific Ocean , 2011, PloS one.
[60] E. Johannesen,et al. Baleen whale distributions and prey associations in the Barents Sea , 2011 .
[61] R. Knight,et al. UniFrac: an effective distance metric for microbial community comparison , 2011, The ISME Journal.
[62] J. Potvin,et al. Mechanics, hydrodynamics and energetics of blue whale lunge feeding: efficiency dependence on krill density , 2011, Journal of Experimental Biology.
[63] T. Bruns,et al. Quantifying microbial communities with 454 pyrosequencing: does read abundance count? , 2010, Molecular ecology.
[64] James G. Mitchell,et al. Iron defecation by sperm whales stimulates carbon export in the Southern Ocean , 2010, Proceedings of the Royal Society B: Biological Sciences.
[65] J. McCarthy,et al. The Whale Pump: Marine Mammals Enhance Primary Productivity in a Coastal Basin , 2010, PloS one.
[66] S. Frusher,et al. Non-lethal method to obtain stomach samples from a large marine predator and the use of DNA analysis to improve dietary information , 2010 .
[67] S. Lavery,et al. Using DNA barcoding and phylogenetics to identify Antarctic invertebrate larvae: Lessons from a large scale study. , 2010, Marine genomics.
[68] A. Chiaradia,et al. Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out? , 2010, Conservation Genetics.
[69] R. Constantine,et al. Conservation status of New Zealand marine mammals (suborders Cetacea and Pinnipedia), 2009 , 2010 .
[70] Campbell O. Webb,et al. Picante: R tools for integrating phylogenies and ecology , 2010, Bioinform..
[71] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[72] Paramvir S. Dehal,et al. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments , 2010, PloS one.
[73] I. Cascão,et al. Bryde's whale (Balaenoptera brydei) stable associations and dive profiles: New insights into foraging behavior , 2009 .
[74] B. Deagle,et al. Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces , 2009, Molecular ecology.
[75] Glenn Dunshea,et al. DNA-Based Diet Analysis for Any Predator , 2009, PloS one.
[76] S. Bryant,et al. Database resources of the National Center for Biotechnology Information , 2008, Nucleic acids research.
[77] S. Jarman,et al. Blocking primers to enhance PCR amplification of rare sequences in mixed samples – a case study on prey DNA in Antarctic krill stomachs , 2008, Frontiers in Zoology.
[78] A. Richardson. In hot water: zooplankton and climate change , 2008 .
[79] C. Duarte. Impacts of Global Warming on Polar Ecosystems , 2008 .
[80] L. Jost. Partitioning diversity into independent alpha and beta components. , 2007, Ecology.
[81] Ruth M. Casper,et al. Detecting prey from DNA in predator scats: a comparison with morphological analysis, using Arctocephalus seals fed a known diet , 2007 .
[82] Hiroshi Okamura,et al. Prey selection of common minke (Balaenoptera acutorostrata) and Bryde's (Balaenoptera edeni) whales in the western North Pacific in 2000 and 2001 , 2007 .
[83] Marti J. Anderson,et al. Multivariate dispersion as a measure of beta diversity. , 2006, Ecology letters.
[84] Marti J. Anderson,et al. Distance‐Based Tests for Homogeneity of Multivariate Dispersions , 2006, Biometrics.
[85] R. Knight,et al. UniFrac: a New Phylogenetic Method for Comparing Microbial Communities , 2005, Applied and Environmental Microbiology.
[86] B. Edvardsen,et al. Assessing feeding of a carnivorous copepod using species-specific PCR , 2005 .
[87] J. Gordon,et al. Seasonal distribution of minke whales Balaenoptera acutorostrata in relation to physiography and prey off the Isle of Mull, Scotland , 2004 .
[88] E. K. Pikitch,et al. Ecosystem-Based Fishery Management , 2004, Science.
[89] J. Zeldis. New and remineralised nutrient supply and ecosystem metabolism on the northeastern New Zealand continental shelf , 2004 .
[90] R. Walters,et al. Circulation over the northeastern New Zealand continental slope, shelf and adjacent Hauraki Gulf, during spring and summer , 2004 .
[91] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[92] Gregory D. Schuler,et al. Database resources of the National Center for Biotechnology Information: update , 2004, Nucleic acids research.
[93] Marti J. Anderson,et al. CANONICAL ANALYSIS OF PRINCIPAL COORDINATES: A USEFUL METHOD OF CONSTRAINED ORDINATION FOR ECOLOGY , 2003 .
[94] P. Best. Distribution and population separation of Bryde's whale Balaenoptera edeni off southern Africa , 2001 .
[95] Hanna,et al. Principles for Sustainable Governance of the Oceans , 1998, Science.
[96] D. Pauly,et al. Diet composition and trophic levels of marine mammals , 1998 .
[97] P Green,et al. Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.
[98] P. Green,et al. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.
[99] G. Víkingsson. Feeding of Fin Whales (Balaenoptera physalus) off Iceland – Diurnal and Seasonal Variation and Possible Rates , 1997 .
[100] M. Egholm,et al. Single base pair mutation analysis by PNA directed PCR clamping. , 1993, Nucleic acids research.
[101] J. T. Curtis,et al. An Ordination of the Upland Forest Communities of Southern Wisconsin , 1957 .