SIRT6 in DNA repair, metabolism and ageing

Ageing, or increased mortality with time, coupled with physiologic decline, is a nearly universal yet poorly understood biological phenomenon. Studies in model organisms suggest that two conserved pathways modulate longevity: DNA damage repair and Insulin/Igf1‐like signalling. In addition, homologs of yeast Sir2 – the sirtuins – regulate lifespan in diverse organisms. Here, we focus on one particular sirtuin, SIRT6. Mice lacking SIRT6 develop a degenerative disorder that in some respects mimics models of accelerated ageing [Cell (2006) 124:315]. We discuss how sirtuins in general and SIRT6 specifically relate to other evolutionarily conserved pathways affecting ageing, and how SIRT6 might function to ensure organismal homeostasis and normal lifespan.

[1]  Matthias Blüher,et al.  Extended Longevity in Mice Lacking the Insulin Receptor in Adipose Tissue , 2003, Science.

[2]  M. Hottiger,et al.  Acetylation regulates the DNA end-trimming activity of DNA polymerase beta. , 2002, Molecular cell.

[3]  T. Pandita,et al.  Ataxia-telangiectasia mutated gene controls insulin-like growth factor I receptor gene expression in a deoxyribonucleic acid damage response pathway via mechanisms involving zinc-finger transcription factors Sp1 and WT1. , 2004, Endocrinology.

[4]  G. Barja Free radicals and aging , 2004, Trends in Neurosciences.

[5]  Eric Verdin,et al.  Mammalian Sir2 Homolog SIRT3 Regulates Global Mitochondrial Lysine Acetylation , 2007, Molecular and Cellular Biology.

[6]  P. Hsieh,et al.  Molecular mechanisms of DNA mismatch repair. , 2001, Mutation research.

[7]  J. Egly,et al.  Trichothiodystrophy, a transcription syndrome. , 2001, Trends in genetics : TIG.

[8]  Steven P Gygi,et al.  Nutrient control of glucose homeostasis through a complex of PGC-1alpha and SIRT1. , 2005, Nature.

[9]  J. Rine,et al.  Yeast cell-type regulation of DNA repair , 1999, Nature.

[10]  J. Denu,et al.  The human Sir2 ortholog, SIRT2, is an NAD+-dependent tubulin deacetylase. , 2003, Molecular cell.

[11]  N. Holbrook,et al.  Oxidants, oxidative stress and the biology of ageing , 2000, Nature.

[12]  P. Klatt,et al.  Delayed ageing through damage protection by the Arf/p53 pathway , 2007, Nature.

[13]  Jiandi Zhang Resveratrol inhibits insulin responses in a SirT1-independent pathway. , 2006, The Biochemical journal.

[14]  Namjin Chung,et al.  Sirt1 promotes fat mobilization in white adipocytes by repressing PPAR-γ , 2004, Nature.

[15]  J. Vijg Somatic mutations and aging: a re-evaluation. , 2000, Mutation research.

[16]  C. Kenyon The Plasticity of Aging: Insights from Long-Lived Mutants , 2005, Cell.

[17]  S. Vatner,et al.  Silent Information Regulator 2&agr;, a Longevity Factor and Class III Histone Deacetylase, Is an Essential Endogenous Apoptosis Inhibitor in Cardiac Myocytes , 2004, Circulation research.

[18]  Han You,et al.  Coordination and communication between the p53 and IGF-1-AKT-TOR signal transduction pathways. , 2006, Genes & development.

[19]  J. Hoeijmakers,et al.  Nucleotide Excision Repair Disorders and the Balance Between Cancer and Aging , 2006, Cell cycle.

[20]  S. Baylin,et al.  Tumor Suppressor HIC1 Directly Regulates SIRT1 to Modulate p53-Dependent DNA-Damage Responses , 2005, Cell.

[21]  Pier Paolo Pandolfi,et al.  The p66shc adaptor protein controls oxidative stress response and life span in mammals , 1999, Nature.

[22]  D. Moazed,et al.  An Enzymatic Activity in the Yeast Sir2 Protein that Is Essential for Gene Silencing , 1999, Cell.

[23]  J. Mcwhir,et al.  Mice with DNA repair gene (ERCC-1) deficiency have elevated levels of p53, liver nuclear abnormalities and die before weaning , 1993, Nature Genetics.

[24]  N. Barzilai,et al.  The insulin/IGF-1 signaling in mammals and its relevance to human longevity , 2005, Experimental Gerontology.

[25]  L. Guarente,et al.  Increased dosage of a sir-2 gene extends lifespan in Caenorhabditis elegans , 2001, Nature.

[26]  L. Guarente,et al.  Mammalian sirtuins--emerging roles in physiology, aging, and calorie restriction. , 2006, Genes & development.

[27]  F. Alt,et al.  Developmental defects and p53 hyperacetylation in Sir2 homolog (SIRT1)-deficient mice , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[28]  J. Hoeijmakers,et al.  Early postnatal ataxia and abnormal cerebellar development in mice lacking Xeroderma pigmentosum Group A and Cockayne Syndrome Group B DNA repair genes , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[29]  M. Hande,et al.  Yeast Nhp6A/B and Mammalian Hmgb1 Facilitate the Maintenance of Genome Stability , 2005, Current Biology.

[30]  Samuel H. Wilson,et al.  Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[31]  S. Benzer,et al.  Regulation of Lifespan in Drosophila by Modulation of Genes in the TOR Signaling Pathway , 2004, Current Biology.

[32]  Sophie G. Martin,et al.  Relocalization of Telomeric Ku and SIR Proteins in Response to DNA Strand Breaks in Yeast , 1999, Cell.

[33]  M. White,et al.  Brain IRS2 Signaling Coordinates Life Span and Nutrient Homeostasis , 2007, Science.

[34]  J. Hoeijmakers,et al.  A new progeroid syndrome reveals that genotoxic stress suppresses the somatotroph axis , 2006, Nature.

[35]  J. Hoeijmakers,et al.  Premature Aging in Mice Deficient in DNA Repair and Transcription , 2002, Science.

[36]  J. Haber,et al.  Role of yeast SIR genes and mating type in directing DNA double-strand breaks to homologous and non-homologous repair paths , 1999, Current Biology.

[37]  D. Sabatini,et al.  Growing roles for the mTOR pathway. , 2005, Current opinion in cell biology.

[38]  B. Hemmings,et al.  Identification of a PKB/Akt Hydrophobic Motif Ser-473 Kinase as DNA-dependent Protein Kinase*♦ , 2004, Journal of Biological Chemistry.

[39]  R. Sternglanz,et al.  The silencing protein SIR2 and its homologs are NAD-dependent protein deacetylases. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[40]  Q. Tong,et al.  SIRT3, a Mitochondrial Sirtuin Deacetylase, Regulates Mitochondrial Function and Thermogenesis in Brown Adipocytes* , 2005, Journal of Biological Chemistry.

[41]  Kan Ding,et al.  Multiple organ pathology, metabolic abnormalities and impaired homeostasis of reactive oxygen species in Epas1−/− mice , 2003, Nature Genetics.

[42]  Andre Fischer,et al.  SIRT1 deacetylase protects against neurodegeneration in models for Alzheimer's disease and amyotrophic lateral sclerosis , 2007, The EMBO journal.

[43]  J. Wood,et al.  Sirtuin activators mimic caloric restriction and delay ageing in metazoans , 2004, Nature.

[44]  T. Weitao,et al.  Evidence that yeast SGS1, DNA2, SRS2, and FOB1 interact to maintain rDNA stability. , 2003, Mutation research.

[45]  R. Sternglanz,et al.  Silent information regulator 2 family of NAD- dependent histone/protein deacetylases generates a unique product, 1-O-acetyl-ADP-ribose. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[46]  Nancy L. Maas,et al.  Cell cycle and checkpoint regulation of histone H3 K56 acetylation by Hst3 and Hst4. , 2006, Molecular cell.

[47]  R. Weindruch,et al.  Oxidative Stress, Caloric Restriction, and Aging , 1996, Science.

[48]  A. Bartke,et al.  Long-lived growth hormone receptor knockout mice: interaction of reduced insulin-like growth factor i/insulin signaling and caloric restriction. , 2005, Endocrinology.

[49]  D. Nolan,et al.  A chromosomal SIR2 homologue with both histone NAD‐dependent ADP‐ribosyltransferase and deacetylase activities is involved in DNA repair in Trypanosoma brucei , 2003, The EMBO journal.

[50]  Kelly M. McGarvey,et al.  Inhibition of SIRT1 Reactivates Silenced Cancer Genes without Loss of Promoter DNA Hypermethylation , 2006, PLoS genetics.

[51]  J. Hoeijmakers,et al.  Impaired Genome Maintenance Suppresses the Growth Hormone–Insulin-Like Growth Factor 1 Axis in Mice with Cockayne Syndrome , 2006, PLoS biology.

[52]  D. Moazed Enzymatic activities of Sir2 and chromatin silencing. , 2001, Current opinion in cell biology.

[53]  J. Boeke,et al.  A phylogenetically conserved NAD+-dependent protein deacetylase activity in the Sir2 protein family. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[54]  Q. Tong,et al.  SIRT2 deacetylates FOXO3a in response to oxidative stress and caloric restriction , 2007, Aging cell.

[55]  Howard T. Jacobs,et al.  Premature ageing in mice expressing defective mitochondrial DNA polymerase , 2004, Nature.

[56]  M. Permutt,et al.  Increased dosage of mammalian Sir2 in pancreatic beta cells enhances glucose-stimulated insulin secretion in mice. , 2005, Cell metabolism.

[57]  Michael M. Murphy,et al.  Mammalian SIRT1 limits replicative life span in response to chronic genotoxic stress. , 2005, Cell metabolism.

[58]  W. Gu,et al.  Interactions between E2F1 and SirT1 regulate apoptotic response to DNA damage , 2006, Nature Cell Biology.

[59]  Brian K. Kennedy,et al.  Sirtuins in Aging and Age-Related Disease , 2006, Cell.

[60]  Michael M. Murphy,et al.  IgH class switching and translocations use a robust non-classical end-joining pathway , 2007, Nature.

[61]  J. Boeke,et al.  The Sirtuins Hst3 and Hst4p Preserve Genome Integrity by Controlling Histone H3 Lysine 56 Deacetylation , 2006, Current Biology.

[62]  Stuart K. Kim,et al.  A role for SIR-2.1 regulation of ER stress response genes in determining C. elegans life span. , 2005, Developmental cell.

[63]  R. Frye,et al.  Phylogenetic classification of prokaryotic and eukaryotic Sir2-like proteins. , 2000, Biochemical and biophysical research communications.

[64]  P. Puigserver,et al.  Metabolic control of muscle mitochondrial function and fatty acid oxidation through SIRT1/PGC‐1α , 2007, The EMBO journal.

[65]  P. Puigserver,et al.  Resveratrol Improves Mitochondrial Function and Protects against Metabolic Disease by Activating SIRT1 and PGC-1α , 2006, Cell.

[66]  J. Schneider,et al.  ATM-dependent suppression of stress signaling reduces vascular disease in metabolic syndrome. , 2006, Cell metabolism.

[67]  Robert S. Balaban,et al.  Mitochondria, Oxidants, and Aging , 2005, Cell.

[68]  G. Fink,et al.  Saccharomyces cerevisiae SSD1-V confers longevity by a Sir2p-independent mechanism. , 2004, Genetics.

[69]  S. Minucci,et al.  Human SIR2 deacetylates p53 and antagonizes PML/p53‐induced cellular senescence , 2002, The EMBO journal.

[70]  K. Jacobsen,et al.  The Sirt1 deacetylase modulates the insulin-like growth factor signaling pathway in mammals , 2005, Mechanisms of Ageing and Development.

[71]  C. Kahn,et al.  Insulin signalling and the regulation of glucose and lipid metabolism , 2001, Nature.

[72]  J. Hoeijmakers,et al.  Aging and Genome Maintenance: Lessons from the Mouse? , 2003, Science.

[73]  A. Morley,et al.  Effect of dietary restriction on in vivo somatic mutation in mice. , 1993, Mutation research.

[74]  A B Rose,et al.  Hyperactivation of the silencing proteins, Sir2p and Sir3p, causes chromosome loss. , 1997, Genetics.

[75]  J. Milbrandt,et al.  Resveratrol stimulates AMP kinase activity in neurons , 2007, Proceedings of the National Academy of Sciences.

[76]  Lena Gustafsson,et al.  Asymmetric Inheritance of Oxidatively Damaged Proteins During Cytokinesis , 2003, Science.

[77]  P. Glazer,et al.  ATM-dependent expression of the insulin-like growth factor-I receptor in a pathway regulating radiation response. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[78]  Delin Chen,et al.  Negative Control of p53 by Sir2α Promotes Cell Survival under Stress , 2001, Cell.

[79]  G. Martin Genetic Modulation of Senescent Phenotypes in Homo sapiens , 2005, Cell.

[80]  B. Rogina,et al.  Sir2 mediates longevity in the fly through a pathway related to calorie restriction. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[81]  L. Guarente,et al.  MEC1-Dependent Redistribution of the Sir3 Silencing Protein from Telomeres to DNA Double-Strand Breaks , 1999, Cell.

[82]  Madeleine Lemieux,et al.  Sirt1 Regulates Insulin Secretion by Repressing UCP2 in Pancreatic β Cells , 2005, PLoS biology.

[83]  K. Mohammad,et al.  Modulation of mammalian life span by the short isoform of p53. , 2004, Genes & development.

[84]  R. Mittelstaedt,et al.  Effect of caloric restriction on Hprt lymphocyte mutation in aging rats. , 2003, Mutation research.

[85]  Matt Kaeberlein,et al.  Regulation of Yeast Replicative Life Span by TOR and Sch9 in Response to Nutrients , 2005, Science.

[86]  William Arbuthnot Sir Lane,et al.  SIRT1 regulates the function of the Nijmegen breakage syndrome protein. , 2007, Molecular cell.

[87]  X. Coumoul,et al.  Absence of the full-length breast cancer-associated gene-1 leads to increased expression of insulin-like growth factor signaling axis members. , 2006, Cancer research.

[88]  F. Alt,et al.  SIRT4 Inhibits Glutamate Dehydrogenase and Opposes the Effects of Calorie Restriction in Pancreatic β Cells , 2006, Cell.

[89]  T. D. Pugh,et al.  Mitochondrial DNA Mutations, Oxidative Stress, and Apoptosis in Mammalian Aging , 2005, Science.

[90]  Dudley Lamming,et al.  HST2 Mediates SIR2-Independent Life-Span Extension by Calorie Restriction , 2005, Science.

[91]  T. Lindahl,et al.  DNA base excision repair of uracil residues in reconstituted nucleosome core particles , 2002, The EMBO journal.

[92]  Antonino Cattaneo,et al.  Resveratrol Prolongs Lifespan and Retards the Onset of Age-Related Markers in a Short-Lived Vertebrate , 2006, Current Biology.

[93]  P. Pandolfi,et al.  Essential Role for Nuclear PTEN in Maintaining Chromosomal Integrity , 2007, Cell.

[94]  T. Lindahl,et al.  Repair of endogenous DNA damage. , 2000, Cold Spring Harbor symposia on quantitative biology.

[95]  N. Shinkura,et al.  Growth Retardation, Early Death, and DNA Repair Defects in Mice Deficient for the Nucleotide Excision Repair Enzyme XPF , 2004, Molecular and Cellular Biology.

[96]  S. Armstrong,et al.  FoxOs Are Critical Mediators of Hematopoietic Stem Cell Resistance to Physiologic Oxidative Stress , 2007, Cell.

[97]  V. Longo,et al.  Regulation of Longevity and Stress Resistance by Sch9 in Yeast , 2001, Science.

[98]  L. Álvarez-Vallina,et al.  Full Activation of PKB/Akt in Response to Insulin or Ionizing Radiation Is Mediated through ATM* , 2005, Journal of Biological Chemistry.

[99]  C. I. Zeeuw,et al.  Adaptive Stress Response in Segmental Progeria Resembles Long-Lived Dwarfism and Calorie Restriction in Mice , 2006, PLoS genetics.

[100]  L. Pirola,et al.  Resveratrol is a class IA phosphoinositide 3-kinase inhibitor. , 2007, The Biochemical journal.

[101]  M. McVey,et al.  The SIR2/3/4 complex and SIR2 alone promote longevity in Saccharomyces cerevisiae by two different mechanisms. , 1999, Genes & development.

[102]  J. M. Sherman,et al.  The SIR2 gene family, conserved from bacteria to humans, functions in silencing, cell cycle progression, and chromosome stability. , 1995, Genes & development.

[103]  J. Campisi Senescent Cells, Tumor Suppression, and Organismal Aging: Good Citizens, Bad Neighbors , 2005, Cell.

[104]  H. Tissenbaum,et al.  Overlapping and distinct functions for a Caenorhabditis elegans SIR2 and DAF-16/FOXO , 2006, Mechanisms of Ageing and Development.

[105]  L. Guarente,et al.  Extrachromosomal rDNA Circles— A Cause of Aging in Yeast , 1997, Cell.

[106]  B. Burgering,et al.  Stressing the role of FoxO proteins in lifespan and disease , 2007, Nature Reviews Molecular Cell Biology.

[107]  C. Leake Free radicals and aging. , 1968, Geriatrics.

[108]  L. Guarente,et al.  Negative control of p53 by Sir2alpha promotes cell survival under stress. , 2001, Cell.

[109]  Lin Yan,et al.  Type 5 Adenylyl Cyclase Disruption Increases Longevity and Protects Against Stress , 2007, Cell.

[110]  V. Bohr,et al.  The mechanics of base excision repair, and its relationship to aging and disease. , 2007, DNA repair.

[111]  R. Parsons,et al.  PTEN Loss Inhibits CHK1 to Cause Double Stranded-DNA Breaks in Cells , 2005, Cell cycle.

[112]  Phuong Chung,et al.  Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan , 2003, Nature.

[113]  R. Frye,et al.  Characterization of five human cDNAs with homology to the yeast SIR2 gene: Sir2-like proteins (sirtuins) metabolize NAD and may have protein ADP-ribosyltransferase activity. , 1999, Biochemical and biophysical research communications.

[114]  L. Guarente,et al.  Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase , 2000, Nature.

[115]  Lewis C Cantley,et al.  The phosphoinositide 3-kinase pathway. , 2002, Science.

[116]  P. Lansdorp,et al.  The Mammalian SIR2α Protein Has a Role in Embryogenesis and Gametogenesis , 2003, Molecular and Cellular Biology.

[117]  Tibor Vellai,et al.  Genetics: Influence of TOR kinase on lifespan in C. elegans , 2003, Nature.

[118]  S. Vatner,et al.  Sirt1 Regulates Aging and Resistance to Oxidative Stress in the Heart , 2007, Circulation research.

[119]  M. Emond,et al.  Extension of Murine Life Span by Overexpression of Catalase Targeted to Mitochondria , 2005, Science.

[120]  J. Kato,et al.  Silencing factors participate in DNA repair and recombination in Saccharomyces cerevisiae , 1997, Nature.

[121]  J. Boeke,et al.  The biochemistry of sirtuins. , 2006, Annual review of biochemistry.

[122]  R. Weinberg,et al.  hSIR2SIRT1 Functions as an NAD-Dependent p53 Deacetylase , 2001, Cell.

[123]  L. Guarente,et al.  Mouse Sir2 Homolog SIRT6 Is a Nuclear ADP-ribosyltransferase* , 2005, Journal of Biological Chemistry.

[124]  S. Fields,et al.  Lifespan extension in Caenorhabditis elegans by complete removal of food , 2006, Aging cell.

[125]  Frederick W. Alt,et al.  DNA Repair, Genome Stability, and Aging , 2005, Cell.

[126]  Pingfang Liu,et al.  Genomic Instability and Aging-like Phenotype in the Absence of Mammalian SIRT6 , 2006, Cell.

[127]  Andrew D. Steele,et al.  Increase in Activity During Calorie Restriction Requires Sirt1 , 2005, Science.

[128]  E. Greer,et al.  FOXO transcription factors at the interface between longevity and tumor suppression , 2005, Oncogene.

[129]  C. Epstein,et al.  Life-long reduction in MnSOD activity results in increased DNA damage and higher incidence of cancer but does not accelerate aging. , 2003, Physiological genomics.

[130]  A. Aguzzi,et al.  The lack of chromosomal protein Hmg1 does not disrupt cell growth but causes lethal hypoglycaemia in newborn mice , 1999, Nature Genetics.

[131]  P. Lansdorp,et al.  The mammalian SIR2alpha protein has a role in embryogenesis and gametogenesis. , 2003, Molecular and cellular biology.

[132]  Chao Cheng,et al.  Sir2 Blocks Extreme Life-Span Extension , 2005, Cell.

[133]  T. Finkel Oxidant signals and oxidative stress. , 2003, Current opinion in cell biology.

[134]  P. Puigserver,et al.  Resveratrol improves health and survival of mice on a high-calorie diet , 2006, Nature.

[135]  T. Pandita,et al.  Lack of PTEN sequesters CHK1 and initiates genetic instability. , 2005, Cancer cell.

[136]  Myriam Gorospe,et al.  Calorie Restriction Promotes Mammalian Cell Survival by Inducing the SIRT1 Deacetylase , 2004, Science.