Global endometrial transcriptomic profiling: transient immune activation precedes tissue proliferation and repair in healthy beef cows

[1]  K. Meade,et al.  The postpartum endometrial inflammatory response: a normal physiological event with potential implications for bovine fertility. , 2012, Reproduction, fertility, and development.

[2]  I. M. Sheldon,et al.  Explants of Intact Endometrium to Model Bovine Innate Immunity and Inflammation Ex Vivo , 2012, American journal of reproductive immunology.

[3]  F. Ceciliani,et al.  Widespread expression of SAA and Hp RNA in bovine tissues after evaluation of suitable reference genes. , 2012, Veterinary immunology and immunopathology.

[4]  T. Sakurai,et al.  Expression of GATA1 in the ovine conceptus and endometrium during the peri‐attachment period , 2012, Molecular reproduction and development.

[5]  S. Jacobsen,et al.  Serum amyloid A is expressed in histologically normal tissues from horses and cattle. , 2011, Veterinary immunology and immunopathology.

[6]  R. Gilbert,et al.  Association between endometritis and endometrial cytokine expression in postpartum Holstein cows. , 2011, Theriogenology.

[7]  H. Aburatani,et al.  Epigenetically coordinated GATA2 binding is necessary for endothelium‐specific endomucin expression , 2011, The EMBO journal.

[8]  H. Niemann,et al.  In vivo oocyte developmental competence is reduced in lean but not in obese superovulated dairy cows after intraovarian administration of IGF1. , 2011, Reproduction.

[9]  Chengyu Liu,et al.  Unbound (bioavailable) IGF1 enhances somatic growth , 2011, Disease Models & Mechanisms.

[10]  H. Jabbour,et al.  Inflammatory pathways in endometrial disorders , 2011, Molecular and Cellular Endocrinology.

[11]  R. L. Santos,et al.  Postpartum toll-like receptors and β-defensin 5 mRNA levels in the endometrium of Holstein cows. , 2011, Veterinary immunology and immunopathology.

[12]  J. Patton,et al.  Influence of energy balance on the somatotrophic axis and matrix metalloproteinase expression in the endometrium of the postpartum dairy cow , 2011, Reproduction.

[13]  D. Kenny,et al.  Effect of dietary n-3 polyunsaturated fatty acid supplementation on bovine uterine endometrial and hepatic gene expression of the insulin-like growth factor system. , 2011, Theriogenology.

[14]  R. Einspanier,et al.  Time-dependent mRNA expression of selected pro-inflammatory factors in the endometrium of primiparous cows postpartum , 2010, Reproductive biology and endocrinology : RB&E.

[15]  R. Arsenescu,et al.  Intestinal Epithelial Serum Amyloid A Modulates Bacterial Growth In Vitro and Pro-Inflammatory Responses in Mouse Experimental Colitis , 2010, BMC gastroenterology.

[16]  I. T. Ten Berge,et al.  Serine proteases of the human immune system in health and disease. , 2010, Molecular immunology.

[17]  M. Robinson,et al.  A scaling normalization method for differential expression analysis of RNA-seq data , 2010, Genome Biology.

[18]  H. Taniguchi,et al.  Epidermal growth factor receptor is an obligatory intermediate for oxytocin-induced cyclooxygenase 2 expression and prostaglandin F2 alpha production in bovine endometrial epithelial cells. , 2010, Endocrinology.

[19]  Jie J. Zheng,et al.  Macrophage Wnt7b is critical for kidney repair and regeneration , 2010, Proceedings of the National Academy of Sciences.

[20]  J. Bromfield,et al.  Specific Strains of Escherichia coli Are Pathogenic for the Endometrium of Cattle and Cause Pelvic Inflammatory Disease in Cattle and Mice , 2010, PloS one.

[21]  Matthew D. Young,et al.  Gene ontology analysis for RNA-seq: accounting for selection bias , 2010, Genome Biology.

[22]  S. Pointing,et al.  Reply to Singh: No archaea found but other rare phylotypes present , 2010, Proceedings of the National Academy of Sciences.

[23]  Albert Y. Zomaya,et al.  A particle swarm based hybrid system for imbalanced medical data sampling , 2009, BMC Genomics.

[24]  T. Sakurai,et al.  Involvement of GATA transcription factors in the regulation of endogenous bovine interferon‐Tau gene transcription , 2009, Molecular reproduction and development.

[25]  J. Norman,et al.  Inflammatory pathways in female reproductive health and disease. , 2009, Reproduction.

[26]  G. Donofrio,et al.  Defining Postpartum Uterine Disease and the Mechanisms of Infection and Immunity in the Female Reproductive Tract in Cattle1 , 2009, Biology of reproduction.

[27]  Davis J. McCarthy,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[28]  M. Mitchell,et al.  Evaluation of real-time PCR endogenous control genes for analysis of gene expression in bovine endometrium , 2009 .

[29]  E. Wolf,et al.  Evidence for Estrogen-Dependent Uterine Serpin (SERPINA14) Expression During Estrus in the Bovine Endometrial Glandular Epithelium and Lumen1 , 2009, Biology of reproduction.

[30]  Xuegong Zhang,et al.  Gene-set analysis identifies master transcription factors in developmental courses. , 2009, Genomics.

[31]  J. Patton,et al.  Negative energy balance alters global gene expression and immune responses in the uterus of postpartum dairy cows , 2009, Physiological genomics.

[32]  K. Meade,et al.  Histopathological and molecular evaluation of Holstein-Friesian cows postpartum: toward an improved understanding of uterine innate immunity. , 2009, Theriogenology.

[33]  C. Bryant,et al.  Expression of genes associated with immunity in the endometrium of cattle with disparate postpartum uterine disease and fertility , 2009 .

[34]  Lior Pachter,et al.  Sequence Analysis , 2020, Definitions.

[35]  Yufeng Shen,et al.  Bos taurus genome assembly , 2009, BMC Genomics.

[36]  Cole Trapnell,et al.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.

[37]  A. Abo,et al.  Tipping the balance: modulating the Wnt pathway for tissue repair. , 2009, Trends in biotechnology.

[38]  Juha Merilä,et al.  A first-generation microsatellite-based genetic linkage map of the Siberian jay (Perisoreus infaustus): insights into avian genome evolution , 2009, BMC Genomics.

[39]  K. Meade,et al.  Toll-like receptor and antimicrobial peptide expression in the bovine endometrium , 2008, Reproductive Biology and Endocrinology : RB&E.

[40]  D. Kenny,et al.  Endometrial expression of the insulin-like growth factor system during uterine involution in the postpartum dairy cow , 2008, Domestic animal endocrinology.

[41]  R. Murray,et al.  The immune status of the bovine uterus during the peripartum period. , 2008, Veterinary journal.

[42]  F. Johnson,et al.  SRC family nonreceptor tyrosine kinases as molecular targets for cancer therapy. , 2007, Anti-cancer agents in medicinal chemistry.

[43]  G. Rosa,et al.  Pattern of expression of the uterine milk protein gene and its association with productive life in dairy cattle. , 2007, Journal of dairy science.

[44]  E. Wolf,et al.  Embryo-induced transcriptome changes in bovine endometrium reveal species-specific and common molecular markers of uterine receptivity. , 2006, Reproduction.

[45]  C. Knight,et al.  Acute phase proteins in bovine milk in an experimental model of Staphylococcus aureus subclinical mastitis. , 2006, Journal of dairy science.

[46]  I. M. Sheldon,et al.  Defining postpartum uterine disease in cattle. , 2006, Theriogenology.

[47]  E. Wolf,et al.  Monozygotic Twin Model Reveals Novel Embryo-Induced Transcriptome Changes of Bovine Endometrium in the Preattachment Period1 , 2006, Biology of reproduction.

[48]  Ill-Hwa Kim,et al.  Immune responses during the peripartum period in dairy cows with postpartum endometritis. , 2005, The Journal of reproduction and development.

[49]  E. Wolf,et al.  Gene expression profiling of bovine endometrium during the oestrous cycle: detection of molecular pathways involved in functional changes. , 2005, Journal of molecular endocrinology.

[50]  J. Walton,et al.  A comparison of the cytobrush and uterine lavage techniques to evaluate endometrial cytology in clinically normal postpartum dairy cows. , 2005, The Canadian veterinary journal = La revue veterinaire canadienne.

[51]  H. Dobson,et al.  Postpartum uterine health in cattle. , 2004, Animal reproduction science.

[52]  Matthew Hurles,et al.  Gene Duplication: The Genomic Trade in Spare Parts , 2004, PLoS biology.

[53]  Ash A. Alizadeh,et al.  Gene Expression Signature of Fibroblast Serum Response Predicts Human Cancer Progression: Similarities between Tumors and Wounds , 2004, PLoS biology.

[54]  T. Spencer,et al.  Postpartum uterine involution in sheep: histoarchitecture and changes in endometrial gene expression. , 2003, Reproduction.

[55]  P. Hansen,et al.  Natural Killer-Like Cells in the Sheep: Functional Characterization and Regulation by Pregnancy-Associated Proteins , 2002, Experimental biology and medicine.

[56]  J Hart,et al.  Inflammation. 2: Its role in the healing of chronic wounds. , 2002, Journal of wound care.

[57]  F. Speleman,et al.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes , 2002, Genome Biology.

[58]  J Hart,et al.  Inflammation. 1: Its role in the healing of acute wounds. , 2002, Journal of wound care.

[59]  R. Badolato,et al.  New Insights into the Biology of the Acute Phase Response , 1999, Journal of Clinical Immunology.

[60]  P. Cohen,et al.  Widespread Expression of Serum Amyloid A in Histologically Normal Human Tissues: Predominant Localization to the Epithelium , 1998, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[61]  C. Brinckerhoff,et al.  Serum amyloid A (SAA3) produced by rabbit synovial fibroblasts treated with phorbol esters or interleukin 1 induces synthesis of collagenase and is neutralized with specific antiserum. , 1991, The Journal of clinical investigation.

[62]  R. Roberts,et al.  The major progesterone-modulated proteins secreted into the sheep uterus are members of the serpin superfamily of serine protease inhibitors. , 1989, The Journal of biological chemistry.

[63]  H. Dobson,et al.  Bacterial lipopolysaccharide induces an endocrine switch from prostaglandin F2alpha to prostaglandin E2 in bovine endometrium. , 2009, Endocrinology.

[64]  M. Gerstein,et al.  RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.

[65]  Gang Wang,et al.  ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs) , 2007, BMC Genomics.

[66]  S Rozen,et al.  Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.

[67]  R. Bondurant.  Inflammation in the bovine female reproductive tract. , 1999, Journal of animal science.

[68]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[69]  H. T. Gier,et al.  Uterus of the cow after parturition: involutional changes. , 1968, American journal of veterinary research.