Accurate annotation of protein-coding genes in mitochondrial genomes.
暂无分享,去创建一个
P. Stadler | Christian Höner Zu Siederdissen | K. Tout | M. Bernt | Marwa Al Arab | A. Sahyoun | Matthias Bernt | Christian Höner zu Siederdissen | C. Höner zu Siederdissen
[1] Desmond G. Higgins,et al. OD-seq: outlier detection in multiple sequence alignments , 2015, BMC Bioinformatics.
[2] P. Stadler,et al. Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes , 2015, Nucleic acids research.
[3] T. Warnow,et al. Ultra-large alignments using phylogeny-aware profiles , 2015, Genome Biology.
[4] S. Cameron. How to sequence and annotate insect mitochondrial genomes for systematic and comparative genomics research , 2014 .
[5] Justin C. Havird,et al. Performance of Single and Concatenated Sets of Mitochondrial Genes at Inferring Metazoan Relationships Relative to Full Mitogenome Data , 2014, PloS one.
[6] P. Stadler,et al. MITOS: improved de novo metazoan mitochondrial genome annotation. , 2013, Molecular phylogenetics and evolution.
[7] P. Stadler,et al. Genetic aspects of mitochondrial genome evolution. , 2013, Molecular phylogenetics and evolution.
[8] Matthias Bernt,et al. A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny. , 2013, Molecular phylogenetics and evolution.
[9] M. Miya,et al. MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline , 2013, Molecular biology and evolution.
[10] B. Lang,et al. Mitochondrial DNA of Clathrina clathrus (Calcarea, Calcinea): six linear chromosomes, fragmented rRNAs, tRNA editing, and a novel genetic code. , 2013, Molecular biology and evolution.
[11] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[12] Frédéric Delsuc,et al. MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons , 2011, PloS one.
[13] Mattia D'Antonio,et al. MitoZoa: a curated mitochondrial genome database of metazoans for comparative genomics studies. , 2010, Mitochondrion.
[14] R. Lightowlers,et al. Hungry Codons Promote Frameshifting in Human Mitochondrial Ribosomes , 2010, Science.
[15] A. Beckenbach,et al. Characterization of mature mitochondrial transcripts in Drosophila, and the implications for the tRNA punctuation model in arthropods. , 2009, Gene.
[16] R. Russell,et al. Recoding of Translation in Turtle Mitochondrial Genomes: Programmed Frameshift Mutations and Evidence of a Modified Genetic Code , 2008, Journal of Molecular Evolution.
[17] Sarah J. Bourlat,et al. Testing the new animal phylogeny: a phylum level molecular analysis of the animal kingdom. , 2008, Molecular phylogenetics and evolution.
[18] Rafael D Rosengarten,et al. The mitochondrial genome of the hexactinellid sponge Aphrocallistes vastus: Evidence for programmed translational frameshifting , 2008, BMC Genomics.
[19] Rodrigo Lopez,et al. Clustal W and Clustal X version 2.0 , 2007, Bioinform..
[20] Tatiana Tatusova,et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..
[21] J. Dinman. Programmed Ribosomal Frameshifting Goes Beyond Viruses: Organisms from all three kingdoms use frameshifting to regulate gene expression, perhaps signaling a paradigm shift. , 2006, Microbe.
[22] J. Boore. The complete sequence of the mitochondrial genome of Nautilus macromphalus (Mollusca: Cephalopoda) , 2006, BMC Genomics.
[23] James F Parham,et al. The complete mitochondrial genome of the enigmatic bigheaded turtle (Platysternon): description of unusual genomic features and the reconciliation of phylogenetic hypotheses based on mitochondrial and nuclear DNA , 2005, BMC Evolutionary Biology.
[24] P. Gaffney,et al. Complete Mitochondrial DNA Sequence of the Eastern Oyster Crassostrea virginica , 2005, Marine Biotechnology.
[25] T. Katoh,et al. Human Mitochondrial mRNAs Are Stabilized with Polyadenylation Regulated by Mitochondria-specific Poly(A) Polymerase and Polynucleotide Phosphorylase* , 2005, Journal of Biological Chemistry.
[26] Tatiana A. Tatusova,et al. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..
[27] R. Crozier,et al. Single Nucleotide +1 Frameshifts in an Apparently FunctionalMitochondrial Cytochrome b Gene in Ants of the Genus Polyrhachis , 2005, Journal of Molecular Evolution.
[28] Robert K. Jansen,et al. Automatic annotation of organellar genomes with DOGMA , 2004, Bioinform..
[29] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[30] Michael A. Somers,et al. Tree of Life Web Project , 2003 .
[31] A. Meyer,et al. Complete mitochondrial genome suggests diapsid affinities of turtles. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[32] M D Sorenson,et al. An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles. , 1998, Molecular biology and evolution.
[33] Sean R. Eddy,et al. Profile hidden Markov models , 1998, Bioinform..
[34] A. Härlid,et al. The mtDNA sequence of the ostrich and the divergence between paleognathous and neognathous birds. , 1997, Molecular biology and evolution.
[35] A. Meyer,et al. Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. , 1996, Molecular biology and evolution.
[36] P. Farabaugh. Programmed translational frameshifting. , 1996, Annual review of genetics.
[37] D. Maddison,et al. The Tree of Life Web Project , 2007 .
[38] G. Attardi,et al. Mitochondrial biogenesis and genetics , 1995 .
[39] D. Wolstenholme,et al. Animal mitochondrial DNA: structure and evolution. , 1992, International review of cytology.
[40] H. Masaki,et al. Unusual genetic codes and a novel gene structure for tRNA(AGYSer) in starfish mitochondrial DNA. , 1987, Gene.
[41] F. E. Grubbs. Sample Criteria for Testing Outlying Observations , 1950 .