Beyond sequencing: optical mapping of DNA in the age of nanotechnology and nanoscopy.

[1]  Douglas R. Tree,et al.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching. , 2013, Chemical reviews.

[2]  Deacon J. Sweeney,et al.  Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus) , 2012, Nature Biotechnology.

[3]  S. Takayama,et al.  Nanoscale squeezing in elastomeric nanochannels for single chromatin linearization. , 2012, Nano letters.

[4]  Ricardo Henriques,et al.  Single-Molecule Localization Super-Resolution Microscopy: Deeper and Faster , 2012, Microscopy and Microanalysis.

[5]  H. Craighead,et al.  Ordered arrays of native chromatin molecules for high-resolution imaging and analysis. , 2012, ACS nano.

[6]  R. Austin,et al.  DNA confinement in nanochannels: physics and biological applications , 2012, Reports on progress in physics. Physical Society.

[7]  J. Pritchard,et al.  Genomics: ENCODE explained , 2012, Nature.

[8]  K. Dewar,et al.  Denaturation mapping of Saccharomyces cerevisiae. , 2012, Lab on a chip.

[9]  Anders Kristensen,et al.  Nanofluidic devices towards single DNA molecule sequence mapping , 2012, Journal of biophotonics.

[10]  Yael Michaeli,et al.  Channeling DNA for optical mapping , 2012, Nature Biotechnology.

[11]  P. Kwok,et al.  Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly , 2012, Nature Biotechnology.

[12]  M. Molnár-Láng,et al.  High resolution molecular cytogenetic techniques in plants: Pachytene-and fibre-FISH , 2012 .

[13]  Alex Hastie,et al.  Multicolor super-resolution DNA imaging for genetic analysis. , 2012, Nano letters.

[14]  S. Wain-Hobson,et al.  Structural Variability of the Herpes Simplex Virus 1 Genome In Vitro and In Vivo , 2012, Journal of Virology.

[15]  A. Singh,et al.  Single cell genome sequencing. , 2012, Current opinion in biotechnology.

[16]  E. Conseiller,et al.  A diagnostic genetic test for the physical mapping of germline rearrangements in the susceptibility breast cancer genes BRCA1 and BRCA2 , 2012, Human mutation.

[17]  S. Weiss,et al.  Enzymatically incorporated genomic tags for optical mapping of DNA-binding proteins. , 2012, Angewandte Chemie.

[18]  H. Craighead,et al.  Additional : Single DNA Molecule Patterning for High-Throughput Epigenetic Mapping , 2012 .

[19]  F. Persson,et al.  A single-step competitive binding assay for mapping of single DNA molecules. , 2012, Biochemical and biophysical research communications.

[20]  Yanwei Wang,et al.  Resolution limit for DNA barcodes in the Odijk regime. , 2012, Biomicrofluidics.

[21]  Mira V. Han,et al.  Genome sequence of the model medicinal mushroom Ganoderma lucidum , 2012, Nature Communications.

[22]  Rasko Leinonen,et al.  The sequence read archive: explosive growth of sequencing data , 2011, Nucleic Acids Res..

[23]  S. Muller,et al.  Labeling DNA for single-molecule experiments: methods of labeling internal specific sequences on double-stranded DNA. , 2011, Nanoscale.

[24]  Shuang-fang Lim,et al.  DNA methylation profiling in nanochannels. , 2011, Biomicrofluidics.

[25]  Gun Young Jung,et al.  Nanochannel confinement: DNA stretch approaching full contour length. , 2011, Lab on a chip.

[26]  J. Hofkens,et al.  Optical mapping of DNA: Single‐molecule‐based methods for mapping genomes , 2011, Biopolymers.

[27]  Bradley P. Coe,et al.  Genome structural variation discovery and genotyping , 2011, Nature Reviews Genetics.

[28]  E. Weinhold,et al.  Sequence-specific covalent labelling of DNA. , 2011, Biochemical Society transactions.

[29]  S. Das,et al.  Transition between Two Regimes Describing Internal Fluctuation of DNA in a Nanochannel , 2011, PloS one.

[30]  J. Krogmeier,et al.  A lab-on-chip for biothreat detection using single-molecule DNA mapping. , 2011, Lab on a chip.

[31]  J. Hellemans,et al.  Massive parallel amplicon sequencing of the breast cancer genes BRCA1 and BRCA2: opportunities, challenges, and limitations , 2011, Human mutation.

[32]  P. Dedecker,et al.  DNA fluorocode: A single molecule, optical map of DNA with nanometre resolution , 2010 .

[33]  Han Cao,et al.  Single molecule linear analysis of DNA in nano-channel labeled with sequence specific fluorescent probes , 2010, Nucleic acids research.

[34]  E. Triplett,et al.  Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAl 5, suggest a new standard in genome sequence submission , 2010, Standards in genomic sciences.

[35]  David C. Schwartz,et al.  High-resolution human genome structure by single-molecule analysis , 2010, Proceedings of the National Academy of Sciences.

[36]  K. Bishop-Lilly,et al.  Finishing genomes with limited resources: lessons from an ensemble of microbial genomes , 2010, BMC Genomics.

[37]  A. Lim,et al.  A microfluidic chip-compatible bioassay based on single-molecule detection with high sensitivity and multiplexing. , 2010, Lab on a chip.

[38]  Henrik Flyvbjerg,et al.  Single-molecule denaturation mapping of DNA in nanofluidic channels , 2010, Proceedings of the National Academy of Sciences.

[39]  H. Craighead,et al.  DNA manipulation, sorting, and mapping in nanofluidic systems. , 2010, Chemical Society reviews.

[40]  Jonas O. Tegenfeldt,et al.  DNA in nanochannels--directly visualizing genomic information. , 2010, Chemical Society reviews.

[41]  David C. Schwartz,et al.  A Single Molecule Scaffold for the Maize Genome , 2009, PLoS genetics.

[42]  Shuang-fang Lim,et al.  Stretching chromatin through confinement. , 2009, Lab on a chip.

[43]  S. Weiss,et al.  Lighting up individual DNA binding proteins with quantum dots. , 2009, Nano letters.

[44]  A. Hastie,et al.  Single-Molecule Rapid Imaging of Linear Genomes in Nanochannel Array , 2011 .

[45]  M. Metzker Sequencing technologies — the next generation , 2010, Nature Reviews Genetics.

[46]  J. Herrick,et al.  Introduction to molecular combing: genomics, DNA replication, and cancer. , 2009, Methods in molecular biology.

[47]  BMC Molecular Biology BioMed Central Research article Optical mapping discerns genome wide DNA methylation profiles , 2008 .