Surface functionalization studies and direct laser printing of oligonucleotides toward the fabrication of a micromembrane DNA capacitive biosensor

Abstract This work presents a comparative study between two functionalization techniques, gold (Au) and 3-glycidoxypropyl-tri-methoxy silane (GOPTS) that were used to immobilize thiol-modified oligonucleotides on low temperature oxide (LTO) on silicon (Si) surfaces toward the fabrication of a micromembrane array capacitive DNA biosensor. In the effort to increase the surface stress that develops upon probe immobilization and target hybridization and thus enhance the sensor's sensitivity, a number of parameters were investigated such as probe and target concentrations as well as the thickness and roughness of the functionalization layers. Our results indicate that GOPTS is better suited as a functionalization layer for the development of microcantilever or micromembrane-based biosensors due to the enhanced hybridization efficiencies achieved, its relative stability over time and the ability to regenerate the surfaces following analyte recognition. Furthermore, with the use of Laser Induced Forward Transfer, probe oligonucleotides were uniformly deposited at the micron scale on GOPTS-functionalized surfaces, thus allowing for the realization of a micromembrane array capacitive DNA biosensor.

[1]  Ran Chen,et al.  Exploration of the specific structural characteristics of thiol-modified single-stranded DNA self-assembled monolayers on gold by a simple model. , 2011, Biosensors & bioelectronics.

[2]  A. Steel,et al.  Electrochemical quantitation of DNA immobilized on gold. , 1998, Analytical chemistry.

[3]  H. Rothuizen,et al.  Translating biomolecular recognition into nanomechanics. , 2000, Science.

[4]  Ian J Burgess,et al.  Microcantilever-based sensors: effect of morphology, adhesion, and cleanliness of the sensing surface on surface stress. , 2007, Analytical chemistry.

[5]  H. Lang,et al.  Multiple label-free biodetection and quantitative DNA-binding assays on a nanomechanical cantilever array , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[6]  Michael S.-C. Lu,et al.  5×5 CMOS capacitive sensor array for detection of the neurotransmitter dopamine. , 2010, Biosensors & bioelectronics.

[7]  T. M. Herne,et al.  Characterization of DNA Probes Immobilized on Gold Surfaces , 1997 .

[8]  A. Majumdar,et al.  Cantilever arrays for multiplexed mechanical analysis of biomolecular reactions. , 2004, Mechanics & chemistry of biosystems : MCB.

[9]  P. Grutter,et al.  Cantilever-based sensing: the origin of surface stress and optimization strategies , 2010, Nanotechnology.

[10]  Mustafa Culha,et al.  Nanostructured microcantilevers with functionalized cyclodextrin receptor phases: self-assembled monolayers and vapor-deposited films. , 2002, Analytical chemistry.

[11]  Z. Tan,et al.  Mechanical properties of DNA biofilms adsorbed on microcantilevers in label-free biodetections. , 2010, Biomaterials.

[12]  L M Lechuga,et al.  Nanomechanics of the formation of DNA self-assembled monolayers and hybridization on microcantilevers. , 2004, Langmuir : the ACS journal of surfaces and colloids.

[13]  Javier Tamayo,et al.  Label-free detection of DNA hybridization based on hydration-induced tension in nucleic acid films. , 2008, Nature nanotechnology.

[14]  Ioanna Zergioti,et al.  Detection of DNA mutations using a capacitive micro-membrane array. , 2010, Biosensors & bioelectronics.

[15]  A. Majumdar,et al.  Nanomechanical detection of DNA melting on microcantilever surfaces. , 2006, Analytical chemistry.

[16]  C. Niemeyer,et al.  Dendrimer‐Activated Solid Supports for Nucleic Acid and Protein Microarrays , 2001, Chembiochem : a European journal of chemical biology.

[17]  A. Majumdar,et al.  Characterization of grafting density and binding efficiency of DNA and proteins on gold surfaces. , 2005, Langmuir : the ACS journal of surfaces and colloids.

[18]  P. Gong,et al.  DNA surface hybridization: comparison of theory and experiment. , 2010, The journal of physical chemistry. B.

[19]  R. Warmack,et al.  Multiple-input microcantilever sensors , 2000, Ultramicroscopy.

[20]  Byung-Gee Kim,et al.  Biomolecular detection with a thin membrane transducer. , 2008, Lab on a chip.

[21]  D. Krizman,et al.  Picoliter‐Scale Protein Microarrays by Laser Direct Write , 2002, Biotechnology progress.

[22]  Wenmiao Shu,et al.  Investigation of biotin-streptavidin binding interactions using microcantilever sensors. , 2007, Biosensors & bioelectronics.

[23]  J. Shan,et al.  Nanomechanical behaviors of microcantilever-based single-stranded DNA chips induced by counterion osmotic effects , 2011, Biomechanics and modeling in mechanobiology.

[24]  R. Georgiadis,et al.  In situ kinetics of self-assembly by surface plasmon resonance spectroscopy , 1996 .

[25]  J. Colton,et al.  Microcantilevers: sensing chemical interactions via mechanical motion. , 2008, Chemical reviews.

[26]  Adisorn Tuantranont,et al.  Ultrasensitive detection of Vibrio cholerae O1 using microcantilever-based biosensor with dynamic force microscopy. , 2010, Biosensors & bioelectronics.

[27]  Yudong D. He,et al.  Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer , 2001, Nature Biotechnology.

[28]  W. Andreoni,et al.  Thiols and Disulfides on the Au(111) Surface: The Headgroup−Gold Interaction , 2000 .

[29]  Arun Majumdar,et al.  Nanomechanical Forces Generated by Surface Grafted DNA , 2002 .

[30]  A. Kumar,et al.  A facile method for the construction of oligonucleotide microarrays. , 2008, Bioconjugate chemistry.

[31]  A. Passian,et al.  Microcantilever Biosensors , 2007, 2007 IEEE Sensors.

[32]  B Montgomery Pettitt,et al.  Sensitive quantitative nucleic acid detection using oligonucleotide microarrays. , 2003, Journal of the American Chemical Society.

[33]  R. Georgiadis,et al.  The effect of surface probe density on DNA hybridization. , 2001, Nucleic acids research.

[34]  Luca Benini,et al.  New insights for using self-assembly materials to improve the detection stability in label-free DNA-chip and immuno-sensors. , 2009, Biosensors & bioelectronics.

[35]  Arun Majumdar,et al.  Chemomechanics of surface stresses induced by DNA hybridization. , 2006, Langmuir : the ACS journal of surfaces and colloids.

[36]  B Mattiasson,et al.  Sub-attomolar detection of cholera toxin using a label-free capacitive immunosensor. , 2010, Biosensors & bioelectronics.

[37]  Equation of state for polymer liquid crystals: Theory and experiment , 1998, cond-mat/9807299.

[38]  T. Thundat,et al.  Bioassay of prostate-specific antigen (PSA) using microcantilevers , 2001, Nature Biotechnology.

[39]  J. Kjems,et al.  Nanomechanical sensing of DNA sequences using piezoresistive cantilevers. , 2005, Langmuir : the ACS journal of surfaces and colloids.

[40]  A. Buhot,et al.  Sensitivity, specificity, and the hybridization isotherms of DNA chips. , 2003, Biophysical journal.

[41]  Yasar Gurbuz,et al.  Label-free capacitive biosensor for sensitive detection of multiple biomarkers using gold interdigitated capacitor arrays. , 2010, Biosensors & bioelectronics.

[42]  S. Creager,et al.  Consequences of microscopic surface roughness for molecular self-assembly , 1992 .

[43]  Ronald W. Davis,et al.  Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray , 1995, Science.

[44]  Roberto Raiteri,et al.  Sensing of biological substances based on the bending of microfabricated cantilevers , 1999 .

[45]  A versatile multi-platform biochip surface attachment chemistry , 2003 .

[46]  S. P. Fodor,et al.  Light-directed, spatially addressable parallel chemical synthesis. , 1991, Science.

[47]  Costas Fotakis,et al.  Femtosecond laser microprinting of biomaterials , 2005 .

[48]  F. J. Adrian,et al.  Metal deposition from a supported metal film using an excimer laser , 1986 .