A silver bullet in a golden age of functional genomics: the impact of Agrobacterium-mediated transformation of fungi

[1]  G. Foster,et al.  A silver bullet in a golden age of functional genomics: the impact of Agrobacterium-mediated transformation of fungi , 2017, Fungal Biology and Biotechnology.

[2]  E. Thines,et al.  Identification of factors involved in dimorphism and pathogenicity of Zymoseptoria tritici , 2017, PloS one.

[3]  D. Boulware,et al.  Global burden of disease of HIV-associated cryptococcal meningitis: an updated analysis. , 2017, The Lancet. Infectious diseases.

[4]  K. Hyde,et al.  Life styles of Colletotrichum species and implications for plant biosecurity , 2017 .

[5]  M. Bidochka,et al.  Agrobacterium-Mediated Co-transformation of Multiple Genes in Metarhizium robertsii , 2017, Mycobiology.

[6]  Xinping Xu,et al.  Pheromone independent unisexual development in Cryptococcus neoformans , 2017, PLoS genetics.

[7]  E. Grotewold,et al.  The challenges faced by living stock collections in the USA , 2017, eLife.

[8]  H. Wösten,et al.  Highly efficient transformation system for Malassezia furfur and Malassezia pachydermatis using Agrobacterium tumefaciens-mediated transformation. , 2017, Journal of microbiological methods.

[9]  Meijuan Chen,et al.  Multifaceted Roles of the Ras Guanine-Nucleotide Exchange Factor ChRgf in Development, Pathogenesis, and Stress Responses of Colletotrichum higginsianum. , 2017, Phytopathology.

[10]  H. Miyoshi,et al.  The morphogenesis-related NDR kinase pathway of Colletotrichum orbiculare is required for translating plant surface signals into infection-related morphogenesis and pathogenesis , 2017, PLoS pathogens.

[11]  C. Koch,et al.  ChMob2 binds to ChCbk1 and promotes virulence and conidiation of the fungal pathogen Colletotrichum higginsianum , 2017, BMC Microbiology.

[12]  Kylie J. Boyce,et al.  Isolation of conditional mutations in genes essential for viability of Cryptococcus neoformans , 2017, Current Genetics.

[13]  M. Kemppainen,et al.  Agrobacterium-mediated insertional mutagenesis in the mycorrhizal fungus Laccaria bicolor , 2017, Current Genetics.

[14]  J. Heitman,et al.  Gene Function Analysis in the Ubiquitous Human Commensal and Pathogen Malassezia Genus , 2016, mBio.

[15]  Yanbin Liu,et al.  Developing a set of strong intronic promoters for robust metabolic engineering in oleaginous Rhodotorula (Rhodosporidium) yeast species , 2016, Microbial Cell Factories.

[16]  Junxiang Zhang,et al.  Identification of Conidiogenesis-Associated Genes in Colletotrichum gloeosporioides by Agrobacterium tumefaciens-Mediated Transformation , 2016, Current Microbiology.

[17]  J. Stajich,et al.  A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data , 2016, Mycologia.

[18]  V. Citovsky,et al.  Transfer of DNA from Bacteria to Eukaryotes , 2016, mBio.

[19]  G. Foster,et al.  A native promoter and inclusion of an intron is necessary for efficient expression of GFP or mRFP in Armillaria mellea , 2016, Scientific Reports.

[20]  Wei Chen,et al.  Application of a delta-6 desaturase with α-linolenic acid preference on eicosapentaenoic acid production in Mortierella alpina , 2016, Microbial Cell Factories.

[21]  M. Perlin,et al.  Resurgence of Less-Studied Smut Fungi as Models of Phytopathogenesis in the Omics Age. , 2016, Phytopathology.

[22]  K. Burton,et al.  Functional analysis of Agaricus bisporus serine proteinase 1 reveals roles in utilization of humic rich substrates and adaptation to the leaf‐litter ecological niche , 2016, Environmental microbiology.

[23]  M. Perlin,et al.  Reliable transformation system for Microbotryum lychnidis-dioicae informed by genome and transcriptome project , 2016, Archives of Microbiology.

[24]  A. Driessen,et al.  CRISPR/Cas9 Based Genome Editing of Penicillium chrysogenum. , 2016, ACS synthetic biology.

[25]  Lauren S. Ryder,et al.  Investigating the biology of plant infection by the rice blast fungus Magnaporthe oryzae. , 2016, Fungal genetics and biology : FG & B.

[26]  C. V. Rao,et al.  Engineering Rhodosporidium toruloides for increased lipid production , 2016, Biotechnology and bioengineering.

[27]  Emily Waltz,et al.  Gene-edited CRISPR mushroom escapes US regulation , 2016, Nature.

[28]  Yuta Ohmine,et al.  DNA repair genes RAD52 and SRS2, a cell wall synthesis regulator gene SMI1, and the membrane sterol synthesis scaffold gene ERG28 are important in efficient Agrobacterium-mediated yeast transformation with chromosomal T-DNA , 2016, BMC Microbiology.

[29]  S. Reissmann,et al.  Genome editing in Ustilago maydis using the CRISPR-Cas system. , 2016, Fungal genetics and biology : FG & B.

[30]  Wei Chen,et al.  Metabolic Engineering of Mortierella alpina for Enhanced Arachidonic Acid Production through the NADPH-Supplying Strategy , 2016, Applied and Environmental Microbiology.

[31]  R. Castoria,et al.  Transcriptomic responses of the basidiomycete yeast Sporobolomyces sp. to the mycotoxin patulin , 2016, BMC Genomics.

[32]  Z. Zhao,et al.  Cloning and evaluation of different constitutive promoters in the oleaginous yeast Rhodosporidium toruloides , 2016, Yeast.

[33]  T. Rouxel,et al.  A game of hide and seek between avirulence genes AvrLm4-7 and AvrLm3 in Leptosphaeria maculans. , 2016, The New phytologist.

[34]  N. Talbot,et al.  New and Improved Techniques for the Study of Pathogenic Fungi. , 2016, Trends in microbiology.

[35]  T. Arie,et al.  Tailor‐made CRISPR/Cas system for highly efficient targeted gene replacement in the rice blast fungus , 2015, Biotechnology and bioengineering.

[36]  J. Šamaj,et al.  Transient plant transformation mediated by Agrobacterium tumefaciens: Principles, methods and applications. , 2015, Biotechnology advances.

[37]  James J. Cai,et al.  The lncRNA RZE1 Controls Cryptococcal Morphological Transition , 2015, PLoS genetics.

[38]  Markus S. Schröder,et al.  Genus-Wide Comparative Genomics of Malassezia Delineates Its Phylogeny, Physiology, and Niche Adaptation on Human Skin , 2015, PLoS genetics.

[39]  Yanbin Liu,et al.  Engineering an efficient and tight d-amino acid-inducible gene expression system in Rhodosporidium/Rhodotorula species , 2015, Microbial Cell Factories.

[40]  G. Foster,et al.  A reliable in vitro fruiting system for Armillaria mellea for evaluation of Agrobacterium tumefaciens transformation vectors. , 2015, Fungal biology.

[41]  T. Rouxel,et al.  Agrobacterium tumefaciens Gene Transfer: How a Plant Pathogen Hacks the Nuclei of Plant and Nonplant Organisms. , 2015, Phytopathology.

[42]  S. Pan,et al.  Yeast Actin-Related Protein ARP6 Negatively Regulates Agrobacterium-Mediated Transformation of Yeast Cell , 2015, BioMed research international.

[43]  J. Granek,et al.  Rapid mapping of insertional mutations to probe cell wall regulation in Cryptococcus neoformans. , 2015, Fungal genetics and biology : FG & B.

[44]  U. Mortensen,et al.  A CRISPR-Cas9 System for Genetic Engineering of Filamentous Fungi , 2015, PloS one.

[45]  J. Shaw,et al.  Characterization of the 2,3-Oxidosqualene Cyclase Gene from Antrodia cinnamomea and Enhancement of Cytotoxic Triterpenoid Compound Production. , 2015, Journal of natural products.

[46]  Q. Zeng,et al.  Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus , 2015, BMC Genomics.

[47]  T. Cairns,et al.  A suite of Gateway® compatible ternary expression vectors for functional analysis in Zymoseptoria tritici. , 2015, Fungal genetics and biology : FG & B.

[48]  N. Talbot,et al.  Construction and high-throughput phenotypic screening of Zymoseptoria tritici over-expression strains , 2015, Fungal genetics and biology : FG & B.

[49]  G. Steinberg,et al.  Yeast recombination-based cloning as an efficient way of constructing vectors for Zymoseptoria tritici , 2015, Fungal genetics and biology : FG & B.

[50]  S. Gurr,et al.  The impact of Septoria tritici Blotch disease on wheat: An EU perspective , 2015, Fungal genetics and biology : FG & B.

[51]  N. Talbot.  Taming a wild beast: Developing molecular tools and new methods to understand the biology of Zymoseptoria tritici , 2015, Fungal genetics and biology : FG & B.

[52]  M. Göker,et al.  Phylogenetic classification of yeasts and related taxa within Pucciniomycotina , 2015, Studies in mycology.

[53]  S. Torriani,et al.  Zymoseptoria tritici: A major threat to wheat production, integrated approaches to control. , 2015, Fungal genetics and biology : FG & B.

[54]  L. Voll,et al.  A Genetic Screen for Pathogenicity Genes in the Hemibiotrophic Fungus Colletotrichum higginsianum Identifies the Plasma Membrane Proton Pump Pma2 Required for Host Penetration , 2015, PloS one.

[55]  H. Lumbsch,et al.  Recognition of seven species in the Cryptococcus gattii/Cryptococcus neoformans species complex. , 2015, Fungal genetics and biology : FG & B.

[56]  Yoon-Dong Park,et al.  New technology and resources for cryptococcal research. , 2015, Fungal genetics and biology : FG & B.

[57]  R. Jarret,et al.  The genome of cultivated sweet potato contains Agrobacterium T-DNAs with expressed genes: An example of a naturally transgenic food crop , 2015, Proceedings of the National Academy of Sciences.

[58]  K. Hammond-Kosack,et al.  Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions , 2015, BMC Genomics.

[59]  Teresa R. O’Meara,et al.  The Cryptococcus neoformans Alkaline Response Pathway: Identification of a Novel Rim Pathway Activator , 2015, PLoS genetics.

[60]  A. Idnurm,et al.  Essential Gene Discovery in the Basidiomycete Cryptococcus neoformans for Antifungal Drug Target Prioritization , 2015, mBio.

[61]  A. Idnurm,et al.  Phytochelatin synthase is required for tolerating metal toxicity in a basidiomycete yeast and is a conserved factor involved in metal homeostasis in fungi , 2015, Fungal Biology and Biotechnology.

[62]  M. Berg,et al.  Genetic transformation systems in fungi , 2015 .

[63]  H. Judelson,et al.  Development of a bipartite ecdysone-responsive gene switch for the oomycete Phytophthora infestans and its use to manipulate transcription during axenic culture and plant infection. , 2015, Molecular plant pathology.

[64]  M. Berg,et al.  Genetic Transformation Systems in Fungi, Volume 2 , 2015, Fungal Biology.

[65]  A. Andrianopoulos,et al.  Thermally Dimorphic Human Fungal Pathogens--Polyphyletic Pathogens with a Convergent Pathogenicity Trait. , 2015, Cold Spring Harbor perspectives in medicine.

[66]  R. Lowe,et al.  Next-generation genome sequencing can be used to rapidly characterise sequences flanking T-DNA insertions in random insertional mutants of Leptosphaeria maculans , 2014, Fungal Biology and Biotechnology.

[67]  M. Xie,et al.  Agrobacterium tumefaciens-mediated transformation in the entomopathogenic fungus Lecanicillium lecanii and development of benzimidazole fungicide resistant strains. , 2014, Journal of microbiological methods.

[68]  Lilin Zhang,et al.  Systematic Analysis of Zn2Cys6 Transcription Factors Required for Development and Pathogenicity by High-Throughput Gene Knockout in the Rice Blast Fungus , 2014, PLoS pathogens.

[69]  Chuan Xu,et al.  A High-Throughput Gene Disruption Methodology for the Entomopathogenic Fungus Metarhizium robertsii , 2014, PloS one.

[70]  Mingwen Zhao,et al.  An efficient Agrobacterium-mediated transformation method for the edible mushroom Hypsizygus marmoreus. , 2014, Microbiological research.

[71]  R. D. de Vries,et al.  Resolving the polyphyletic nature of Pyricularia (Pyriculariaceae) , 2014, Studies in mycology.

[72]  A. Kihara,et al.  Phs1 and the Synthesis of Very Long Chain Fatty Acids Are Required for Ballistospore Formation , 2014, PloS one.

[73]  T. Rouxel,et al.  Genomes and Transcriptomes of Partners in Plant-Fungal- Interactions between Canola (Brassica napus) and Two Leptosphaeria Species , 2014, PloS one.

[74]  K. Nielsen,et al.  Genetic transformation of Fusarium avenaceum by Agrobacterium tumefaciens mediated transformation and the development of a USER-Brick vector construction system , 2014, BMC Molecular Biology.

[75]  Z. Zhao,et al.  Functional integration of multiple genes into the genome of the oleaginous yeast Rhodosporidium toruloides. , 2014, FEMS yeast research.

[76]  Wei Chen,et al.  Increased fatty acid unsaturation and production of arachidonic acid by homologous over-expression of the mitochondrial malic enzyme in Mortierella alpina , 2014, Biotechnology Letters.

[77]  S. Zhong,et al.  Functional characterization of the gene FoOCH1 encoding a putative α-1,6-mannosyltransferase in Fusarium oxysporum f. sp. cubense. , 2014, Fungal genetics and biology : FG & B.

[78]  Jacqueline E. Schein,et al.  Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation , 2014, PLoS genetics.

[79]  P. Walter,et al.  Molecular Mechanisms of Hypoxic Responses via Unique Roles of Ras1, Cdc24 and Ptp3 in a Human Fungal Pathogen Cryptococcus neoformans , 2014, PLoS genetics.

[80]  P. Hooykaas,et al.  Involvement of Rad52 in T‐DNA circle formation during Agrobacterium tumefaciens‐mediated transformation of Saccharomyces cerevisiae , 2014, Molecular microbiology.

[81]  Nicola J. Patron,et al.  A golden gate modular cloning toolbox for plants. , 2014, ACS synthetic biology.

[82]  Wei Chen,et al.  Role of Malic Enzyme during Fatty Acid Synthesis in the Oleaginous Fungus Mortierella alpina , 2014, Applied and Environmental Microbiology.

[83]  Inna Dubchak,et al.  MycoCosm portal: gearing up for 1000 fungal genomes , 2013, Nucleic Acids Res..

[84]  Yanbin Liu,et al.  Molecular characterization of KU70 and KU80 homologues and exploitation of a KU70-deficient mutant for improving gene deletion frequency in Rhodosporidium toruloides , 2014, BMC Microbiology.

[85]  R. Offringa,et al.  Efficient gene targeting in Penicillium chrysogenum using novel Agrobacterium-mediated transformation approaches. , 2013, Fungal genetics and biology : FG & B.

[86]  Junbin Huang,et al.  Identification of virulence genes in the crucifer anthracnose fungus Colletotrichum higginsianum by insertional mutagenesis. , 2013, Microbial pathogenesis.

[87]  V. Citovsky,et al.  The roles of bacterial and host plant factors in Agrobacterium-mediated genetic transformation. , 2013, The International journal of developmental biology.

[88]  A. Idnurm,et al.  The Uve1 Endonuclease Is Regulated by the White Collar Complex to Protect Cryptococcus neoformans from UV Damage , 2013, PLoS genetics.

[89]  J. Heitman,et al.  Genetic Circuits that Govern Bisexual and Unisexual Reproduction in Cryptococcus neoformans , 2013, PLoS genetics.

[90]  Chunhua Lin,et al.  Identifying pathogenicity genes in the rubber tree anthracnose fungus Colletotrichum gloeosporioides through random insertional mutagenesis. , 2013, Microbiological research.

[91]  S. Beyhan,et al.  A Temperature-Responsive Network Links Cell Shape and Virulence Traits in a Primary Fungal Pathogen , 2013, PLoS biology.

[92]  M. Prieto,et al.  Dating the Diversification of the Major Lineages of Ascomycota (Fungi) , 2013, PloS one.

[93]  B. B. Sahu,et al.  Investigation of the Fusariumvirguliformefvtox1 mutants revealed that the FvTox1 toxin is involved in foliar sudden death syndrome development in soybean , 2013, Current Genetics.

[94]  Julia Oh,et al.  Topographic diversity of fungal and bacterial communities in human skin , 2013, Nature.

[95]  L. Mannina,et al.  Searching for Genes Responsible for Patulin Degradation in a Biocontrol Yeast Provides Insight into the Basis for Resistance to This Mycotoxin , 2013, Applied and Environmental Microbiology.

[96]  D. Geiser,et al.  Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria. , 2013, Fungal genetics and biology : FG & B.

[97]  C. Tanaka,et al.  Transformation of the mushroom species Hypsizigus marmoreus, Flammulina velutipes, and Grifola frondosa by an Agrobacterium-mediated method using a universal transformation plasmid , 2013 .

[98]  C. Rappleye,et al.  Spectrum of T-DNA integrations for insertional mutagenesis of Histoplasma capsulatum. , 2013, Fungal biology.

[99]  Eric A. Johnson.  Biotechnology of non-Saccharomyces yeasts—the basidiomycetes , 2013, Applied Microbiology and Biotechnology.

[100]  Eric A. Johnson.  Biotechnology of non-Saccharomyces yeasts—the ascomycetes , 2013, Applied Microbiology and Biotechnology.

[101]  C. Vágvölgyi,et al.  Canthaxanthin production with modified Mucor circinelloides strains , 2013, Applied Microbiology and Biotechnology.

[102]  David W. Denning,et al.  Hidden Killers: Human Fungal Infections , 2012, Science Translational Medicine.

[103]  C. Vágvölgyi,et al.  Canthaxanthin production with modified Mucor circinelloides strains , 2012, Applied Microbiology and Biotechnology.

[104]  J. Kronstad,et al.  Cryptococcus neoformans Requires the ESCRT Protein Vps23 for Iron Acquisition from Heme, for Capsule Formation, and for Virulence , 2012, Infection and Immunity.

[105]  Jun-Wei Xu,et al.  Enhancement of Ganoderic Acid Accumulation by Overexpression of an N-Terminally Truncated 3-Hydroxy-3-Methylglutaryl Coenzyme A Reductase Gene in the Basidiomycete Ganoderma lucidum , 2012, Applied and Environmental Microbiology.

[106]  N. Lapalu,et al.  Incidence of Genome Structure, DNA Asymmetry, and Cell Physiology on T-DNA Integration in Chromosomes of the Phytopathogenic Fungus Leptosphaeria maculans , 2012, G3: Genes | Genomes | Genetics.

[107]  Antonio Di Pietro,et al.  The Top 10 fungal pathogens in molecular plant pathology. , 2012, Molecular plant pathology.

[108]  J. Schumacher,et al.  Identification of pathogenesis-associated genes by T-DNA-mediated insertional mutagenesis in Botrytis cinerea: a type 2A phosphoprotein phosphatase and an SPT3 transcription factor have significant impact on virulence. , 2012, Molecular plant-microbe interactions : MPMI.

[109]  Rasmus John Normand Frandsen,et al.  Targeted gene replacement in fungal pathogens via Agrobacterium tumefaciens- mediated transformation. , 2012, Methods in molecular biology.

[110]  Longhua Sun,et al.  Characterization of glyceraldehyde-3-phosphate dehydrogenase gene RtGPD1 and development of genetic transformation method by dominant selection in oleaginous yeast Rhodosporidium toruloides , 2012, Applied Microbiology and Biotechnology.

[111]  R. Castoria,et al.  Overcoming recalcitrant transformation and gene manipulation in Pucciniomycotina yeasts , 2012, Applied Microbiology and Biotechnology.

[112]  R. J. Frandsen,et al.  A guide to binary vectors and strategies for targeted genome modification in fungi using Agrobacterium tumefaciens-mediated transformation. , 2011, Journal of microbiological methods.

[113]  F. Cardinale,et al.  Transcription of Genes in the Biosynthetic Pathway for Fumonisin Mycotoxins Is Epigenetically and Differentially Regulated in the Fungal Maize Pathogen Fusarium verticillioides , 2011, Eukaryotic Cell.

[114]  T. Kamada,et al.  Efficient gene targeting in ΔCc.ku70 or ΔCc.lig4 mutants of the agaricomycete Coprinopsis cinerea. , 2011, Fungal genetics and biology : FG & B.

[115]  André L. G. Vieira,et al.  Agrobacterium tumefasciens-mediated transformation of the aquatic fungus Blastocladiella emersonii. , 2011, Fungal genetics and biology : FG & B.

[116]  B. Howlett,et al.  The cross-pathway control system regulates production of the secondary metabolite toxin, sirodesmin PL, in the ascomycete, Leptosphaeria maculans , 2011, BMC Microbiology.

[117]  J. Marsh,et al.  Aberrant protein N‐glycosylation impacts upon infection‐related growth transitions of the haploid plant‐pathogenic fungus Mycosphaerella graminicola , 2011, Molecular microbiology.

[118]  R. Castoria,et al.  Development of resources for the analysis of gene function in Pucciniomycotina red yeasts. , 2011, Fungal genetics and biology : FG & B.

[119]  D. Boulware.  Cryptococcus: from human pathogen to model yeast , 2011 .

[120]  C. Rappleye,et al.  Discovery of a Role for Hsp82 in Histoplasma Virulence through a Quantitative Screen for Macrophage Lethality , 2011, Infection and Immunity.

[121]  B. Wickes,et al.  Insertional mutagenesis combined with an inducible filamentation phenotype reveals a conserved STE50 homologue in Cryptococcus neoformans that is required for monokaryotic fruiting and sexual reproduction , 2011, Molecular microbiology.

[122]  Shizhu Zhang,et al.  High-throughput insertion mutagenesis and functional screening in the entomopathogenic fungus Beauveria bassiana. , 2011, Journal of invertebrate pathology.

[123]  B. Howlett,et al.  Small scale functional genomics of the blackleg fungus, Leptosphaeria maculans: analysis of a 38 kb region , 2003, Australasian Plant Pathology.

[124]  G. Bakkeren,et al.  Introduction of large DNA inserts into the barley pathogenic fungus, Ustilago hordei, via recombined binary BAC vectors and Agrobacterium-mediated transformation , 2011, Current Genetics.

[125]  G. Foster,et al.  Investigating Agrobacterium-Mediated Transformation of Verticillium albo-atrum on Plant Surfaces , 2010, PloS one.

[126]  G. Foster,et al.  Agrobacterium tumefaciens-Mediated Transformation for Investigation of Somatic Recombination in the Fungal Pathogen Armillaria mellea , 2010, Applied and Environmental Microbiology.

[127]  H. Madhani,et al.  Ctr2 Links Copper Homeostasis to Polysaccharide Capsule Formation and Phagocytosis Inhibition in the Human Fungal Pathogen Cryptococcus neoformans , 2010, PloS one.

[128]  M. Kemppainen,et al.  Gene knockdown by ihpRNA-triggering in the ectomycorrhizal basidiomycete fungus Laccaria bicolor , 2010, Bioengineered bugs.

[129]  A. Lupas,et al.  The use of FLP-mediated recombination for the functional analysis of an effector gene family in the biotrophic smut fungus Ustilago maydis. , 2010, The New phytologist.

[130]  G. Foster,et al.  The pmk1-like mitogen-activated protein kinase from Lecanicillium (Verticillium) fungicola is not required for virulence on Agaricus bisporus. , 2010, Microbiology.

[131]  J. Heitman,et al.  Transcription Factors Mat2 and Znf2 Operate Cellular Circuits Orchestrating Opposite- and Same-Sex Mating in Cryptococcus neoformans , 2010, PLoS genetics.

[132]  Lian-Hui Zhang,et al.  A Simplified and efficient method for transformation and gene tagging of Ustilago maydis using frozen cells. , 2010, Fungal genetics and biology : FG & B.

[133]  J. Bohlmann,et al.  Agrobacterium-meditated gene disruption using split-marker in Grosmannia clavigera, a mountain pine beetle associated pathogen , 2010, Current Genetics.

[134]  Christina A. Cuomo,et al.  Source (or Part of the following Source): Type Article Title Comparative Genomics Reveals Mobile Pathogenicity Chromosomes in Fusarium Author(s) , 2022 .

[135]  M. Kemppainen,et al.  pHg/pSILBAγ vector system for efficient gene silencing in homobasidiomycetes: optimization of ihpRNA – triggering in the mycorrhizal fungus Laccaria bicolor , 2010, Microbial Biotechnology.

[136]  M. Kemppainen,et al.  pHg/pSILBAγ vector system for efficient gene silencing in homobasidiomycetes: optimization of ihpRNA – triggering in the mycorrhizal fungus Laccaria bicolor , 2010, Microbial biotechnology.

[137]  J. Heitman,et al.  Cryptococcus: from human pathogen to model yeast. , 2010 .

[138]  P. Dodds,et al.  Transformation of the flax rust fungus, Melampsora lini: selection via silencing of an avirulence gene. , 2010, The Plant journal : for cell and molecular biology.

[139]  Y. H. Zhang,et al.  Agrobacterium rhizogenes-mediated transformation of a high oil-producing fil a m en to us fungusUmbelopsis isabellina , 2010, Journal of Applied Genetics.

[140]  C. Rappleye,et al.  Reverse genetics through random mutagenesis in Histoplasma capsulatum , 2009, BMC Microbiology.

[141]  G. P. V. van Heusden,et al.  Deletion of host histone acetyltransferases and deacetylases strongly affects Agrobacterium-mediated transformation of Saccharomyces cerevisiae. , 2009, FEMS microbiology letters.

[142]  A. P. Van de Wouw,et al.  Mutations to LmIFRD affect cell wall integrity, development and pathogenicity of the ascomycete Leptosphaeria maculans. , 2009, Fungal genetics and biology : FG & B.

[143]  C. Collins,et al.  Investigating dominant selection markers for Coprinopsis cinerea: a carboxin resistance system and re-evaluation of hygromycin and phleomycin resistance vectors , 2009, Current Genetics.

[144]  Dian Anggraini Suroto,et al.  Establishment of Agrobacterium tumefaciens-Mediated Transformation of an Oleaginous Fungus, Mortierella alpina 1S-4, and Its Application for Eicosapentaenoic Acid Producer Breeding , 2009, Applied and Environmental Microbiology.

[145]  M. Rep,et al.  Pathogen profile update: Fusarium oxysporum. , 2009, Molecular plant pathology.

[146]  Yong-Hwan Lee,et al.  A Novel Pathogenicity Gene Is Required in the Rice Blast Fungus to Suppress the Basal Defenses of the Host , 2009, PLoS pathogens.

[147]  J. Heitman,et al.  Identification of ENA1 as a Virulence Gene of the Human Pathogenic Fungus Cryptococcus neoformans through Signature-Tagged Insertional Mutagenesis , 2009, Eukaryotic Cell.

[148]  R. O’Connell,et al.  Discovery of pathogenicity genes in the crucifer anthracnose fungus Colletotrichum higginsianum, using random insertional mutagenesis. , 2009, Molecular plant-microbe interactions : MPMI.

[149]  D. Eastwood,et al.  Quantifiable downregulation of endogenous genes in Agaricus bisporus mediated by expression of RNA hairpins. , 2009, Journal of microbiology and biotechnology.

[150]  A. Di Pietro,et al.  Identification of virulence genes in Fusarium oxysporum f. sp. lycopersici by large-scale transposon tagging. , 2009, Molecular plant pathology.

[151]  W. Shen,et al.  A screening for suppressor mutants reveals components involved in the blue light-inhibited sexual filamentation in Cryptococcus neoformans. , 2009, Fungal genetics and biology : FG & B.

[152]  M. Rep,et al.  Insight into the molecular requirements for pathogenicity of Fusarium oxysporum f. sp. lycopersici through large-scale insertional mutagenesis , 2009, Genome Biology.

[153]  M. Daboussi,et al.  Transposon-tagging identifies novel pathogenicity genes in Fusarium graminearum. , 2008, Fungal genetics and biology : FG & B.

[154]  Junfang Lin,et al.  Highly efficient Agrobacterium-mediated transformation of Volvariella volvacea. , 2008, Bioresource technology.

[155]  A. Smulian,et al.  The Histoplasma capsulatum vacuolar ATPase is required for iron homeostasis, intracellular replication in macrophages and virulence in a murine model of histoplasmosis , 2008, Molecular microbiology.

[156]  A. Sil,et al.  Conserved factors Ryp2 and Ryp3 control cell morphology and infectious spore formation in the fungal pathogen Histoplasma capsulatum , 2008, Proceedings of the National Academy of Sciences.

[157]  S. Krasnoff,et al.  Agrobacterium-Mediated Disruption of a Nonribosomal Peptide Synthetase Gene in the Invertebrate Pathogen Metarhizium anisopliae Reveals a Peptide Spore Factor , 2008, Applied and Environmental Microbiology.

[158]  A. Sil,et al.  Temperature-induced switch to the pathogenic yeast form of Histoplasma capsulatum requires Ryp1, a conserved transcriptional regulator , 2008, Proceedings of the National Academy of Sciences.

[159]  C. Vágvölgyi,et al.  Agrobacterium tumefaciens ‐mediated transformation of the zygomycete fungus Backusella lamprospora , 2008, Journal of basic microbiology.

[160]  N. Sauer,et al.  The hemibiotrophic lifestyle of Colletotrichum species. , 2008, Journal of plant physiology.

[161]  N. Requena,et al.  Expression of the fluorescence markers DsRed and GFP fused to a nuclear localization signal in the arbuscular mycorrhizal fungus Glomus intraradices. , 2007, The New phytologist.

[162]  C. Vágvölgyi,et al.  Agrobacterium tumefaciens-mediated transformation ofMucor circinelloides , 2005, Folia Microbiologica.

[163]  J. Martín,et al.  A squalene epoxidase is involved in biosynthesis of both the antitumor compound clavaric acid and sterols in the basidiomycete H. sublateritium. , 2007, Chemistry & biology.

[164]  R. Dean,et al.  Development of a high throughput transformation system for insertional mutagenesis in Magnaporthe oryzae. , 2007, Fungal genetics and biology : FG & B.

[165]  R. Dean,et al.  A systematic analysis of T-DNA insertion events in Magnaporthe oryzae. , 2007, Fungal genetics and biology : FG & B.

[166]  Jongsun Park,et al.  Genome-wide analysis of T-DNA integration into the chromosomes of Magnaporthe oryzae , 2007, Molecular microbiology.

[167]  F. Belzile,et al.  Alternative methods for genetic transformation of Pseudozyma antarctica, a basidiomycetous yeast-like fungus. , 2007, Journal of microbiological methods.

[168]  L. Baddour,et al.  Systemic Histoplasmosis: A 15-Year Retrospective Institutional Review of 111 Patients , 2007, Medicine.

[169]  Jongsun Park,et al.  Genome-wide functional analysis of pathogenicity genes in the rice blast fungus , 2007, Nature Genetics.

[170]  Guifu Liu,et al.  Characterization of T-DNA insertion patterns in the genome of rice blast fungus Magnaporthe oryzae , 2007, Current Genetics.

[171]  T. Rouxel,et al.  A critical assessment of Agrobacterium tumefaciens-mediated transformation as a tool for pathogenicity gene discovery in the phytopathogenic fungus Leptosphaeria maculans. , 2007, Fungal genetics and biology : FG & B.

[172]  Yi Xiong,et al.  Fusion PCR and gene targeting in Aspergillus nidulans , 2006, Nature Protocols.

[173]  R. Schiestl,et al.  High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method , 2007, Nature Protocols.

[174]  W. Goldman,et al.  An α‐(1,4)‐amylase is essential for α‐(1,3)‐glucan production and virulence in Histoplasma capsulatum , 2006 .

[175]  D. Hibbett,et al.  An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences. , 2006, Mycologia.

[176]  J. Heitman,et al.  Conserved elements of the RAM signaling pathway establish cell polarity in the basidiomycete Cryptococcus neoformans in a divergent fashion from other fungi. , 2006, Molecular biology of the cell.

[177]  M. Dufresne,et al.  The MAP kinase-encoding gene MgFus3 of the non-appressorium phytopathogen Mycosphaerella graminicola is required for penetration and in vitro pycnidia formation. , 2006, Molecular plant pathology.

[178]  Y. Pei,et al.  Transformation of Metarhizium anisopliae mediated by Agrobacterium tumefaciens. , 2006, Canadian journal of microbiology.

[179]  B. Howlett,et al.  Overexpression of a 3-ketoacyl-CoA thiolase in Leptosphaeria maculans causes reduced pathogenicity on Brassica napus. , 2006, Molecular plant-microbe interactions : MPMI.

[180]  C. Waalwijk,et al.  MgSlt2, a cellular integrity MAP kinase gene of the fungal wheat pathogen Mycosphaerella graminicola, is dispensable for penetration but essential for invasive growth. , 2006, Molecular plant-microbe interactions : MPMI.

[181]  G. Foster,et al.  Evaluation of agrobacterium-mediated transformation of agricus bisporus using a range of promoters linked to hygromycin resistance , 2006, Molecular biotechnology.

[182]  R. Staples,et al.  Transient expression and insertional mutagenesis of Puccinia triticina using biolistics , 2006, Functional & Integrative Genomics.

[183]  K. Isono,et al.  Genome sequencing and analysis of Aspergillus oryzae , 2005, Nature.

[184]  K. Kwon-Chung,et al.  High frequency transformation of Cryptococcus neoformans and Cryptococcus gattii by Agrobacterium tumefaciens. , 2005, Fungal genetics and biology : FG & B.

[185]  J. Heitman,et al.  Deciphering the Model Pathogenic Fungus Cryptococcus Neoformans , 2005, Nature Reviews Microbiology.

[186]  J. Heitman,et al.  Novel gene functions required for melanization of the human pathogen Cryptococcus neoformans , 2005, Molecular microbiology.

[187]  H. Shinoyama,et al.  Generation and characterization of reduced virulence Fusarium oxysporum f. sp. lycopersici mutants through plasmid-vector insertion , 2005, Mycopathologia.

[188]  P. R. Kraus,et al.  Calcium- and Calcineurin-Independent Roles for Calmodulin in Cryptococcus neoformans Morphogenesis and High-Temperature Growth , 2005, Eukaryotic Cell.

[189]  A. Ram,et al.  Agrobacterium-mediated transformation as a tool for functional genomics in fungi , 2005, Current Genetics.

[190]  H. Giese,et al.  Identification of a gene cluster responsible for the biosynthesis of aurofusarin in the Fusarium graminearum species complex. , 2005, Fungal genetics and biology : FG & B.

[191]  Cathryn J. Rehmeyer,et al.  The genome sequence of the rice blast fungus Magnaporthe grisea , 2005, Nature.

[192]  J. Heitman,et al.  Light Controls Growth and Development via a Conserved Pathway in the Fungal Kingdom , 2005, PLoS biology.

[193]  G. Foster,et al.  Efficient GFP expression in the mushrooms Agaricus bisporus and Coprinus cinereus requires introns. , 2005, Fungal Genetics and Biology.

[194]  Moxiao Li,et al.  Transformation of Coniothyrium minitans, a parasite of Sclerotinia sclerotiorum, with Agrobacterium tumefaciens. , 2005, FEMS microbiology letters.

[195]  M. Perlin,et al.  Introduction and maintenance of prokaryotic DNA inUstilago violacea , 1990, Journal of Industrial Microbiology.

[196]  C. Vágvölgyi,et al.  Agrobacterium tumefaciens-mediated transformation of Mucor circinelloides. , 2005, Folia microbiologica.

[197]  A. Ram,et al.  Development of a system for integrative and stable transformation of the zygomycete Rhizopus oryzae by Agrobacterium-mediated DNA transfer , 2004, Molecular Genetics and Genomics.

[198]  J. Heitman,et al.  Cryptococcus neoformans Virulence Gene Discovery through Insertional Mutagenesis , 2004, Eukaryotic Cell.

[199]  J. Guarro,et al.  Fusarium oxysporum as a Multihost Model for the Genetic Dissection of Fungal Virulence in Plants and Mammals , 2004, Infection and Immunity.

[200]  D. Gardiner,et al.  Negative selection using thymidine kinase increases the efficiency of recovery of transformants with targeted genes in the filamentous fungus Leptosphaeria maculans , 2004, Current Genetics.

[201]  R. Oliver,et al.  The transformation of protoplasts of Leptosphaeria maculans to hygromycin B resistance , 1988, Current Genetics.

[202]  H. Kistler,et al.  Genetic transformation of the fungal plant wilt pathogen, Fusarium oxysporum , 1988, Current Genetics.

[203]  G. Zimmermann,et al.  Agrobacterium-mediated insertional mutagenesis (AIM) of the entomopathogenic fungus Beauveria bassiana , 2004, Current Genetics.

[204]  A. Ram,et al.  A one-step method to convert vectors into binary vectors suited for Agrobacterium-mediated transformation , 2004, Current Genetics.

[205]  Natalie L. Catlett,et al.  Split-Marker Recombination for Efficient Targeted Deletion of Fungal Genes , 2003 .

[206]  N. Talbot.  On the trail of a cereal killer: Exploring the biology of Magnaporthe grisea. , 2003, Annual review of microbiology.

[207]  F. Govers,et al.  Agrobacterium tumefaciens mediated transformation of the oomycete plant pathogen Phytophthora infestans. , 2003, Molecular plant pathology.

[208]  P. Williamson,et al.  A CLC‐type chloride channel gene is required for laccase activity and virulence in Cryptococcus neoformans , 2003, Molecular microbiology.

[209]  G. Foster,et al.  Investigating the role of a Verticillium fungicola beta-1,6-glucanase during infection of Agaricus bisporus using targeted gene disruption. , 2003, Fungal genetics and biology : FG & B.

[210]  J. Polaina,et al.  Transformation of Mucor miehei results in plasmid deletion and phenotypic instability. , 2003, FEMS microbiology letters.

[211]  B. Howlett,et al.  Analysis of loss of pathogenicity mutants reveals that repeat-induced point mutations can occur in the Dothideomycete Leptosphaeria maculans. , 2003, Fungal genetics and biology : FG & B.

[212]  Veena,et al.  Identification of Arabidopsis rat Mutants , 2003, Plant Physiology.

[213]  D. E. Monks,et al.  Purine synthesis and increased Agrobacterium tumefaciens transformation of yeast and plants , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[214]  L. Epstein,et al.  A class V chitin synthase gene, chsA is essential for conidial and hyphal wall strength in the fungus Colletotrichum graminicola (Glomerella graminicola). , 2003, Fungal genetics and biology : FG & B.

[215]  H. van Attikum,et al.  Genetic requirements for the targeted integration of Agrobacterium T-DNA in Saccharomyces cerevisiae. , 2003, Nucleic acids research.

[216]  N. Talbot,et al.  Trehalose synthesis and metabolism are required at different stages of plant infection by Magnaporthe grisea , 2003, The EMBO journal.

[217]  B. Klein,et al.  Agrobacterium tumefaciens Integrates Transfer DNA into Single Chromosomal Sites of Dimorphic Fungi and Yields Homokaryotic Progeny from Multinucleate Yeast , 2002, Eukaryotic Cell.

[218]  J. Shuster,et al.  Efficient gene identification and targeted gene disruption in the wheat blotch fungus Mycosphaerella graminicola using TAGKO , 2002, Current Genetics.

[219]  M. Hood.  Dimorphic mating-type chromosomes in the fungus Microbotryum violaceum. , 2002, Genetics.

[220]  E. Mullins,et al.  Transformation: a tool for studying fungal pathogens of plants , 2001, Cellular and Molecular Life Sciences CMLS.

[221]  H. van Attikum,et al.  Non‐homologous end‐joining proteins are required for Agrobacterium T‐DNA integration , 2001, The EMBO journal.

[222]  V. Magrini,et al.  Molecular mycology: a genetic toolbox for Histoplasma capsulatum. , 2001, Trends in microbiology.

[223]  J. Hamer,et al.  Gene discovery and gene function assignment in filamentous fungi , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[224]  Y. Fujita,et al.  Mutation of an arginine biosynthesis gene causes reduced pathogenicity in Fusarium oxysporum f. sp. melonis. , 2001, Molecular plant-microbe interactions : MPMI.

[225]  Mei-ho Lee,et al.  Agrobacterium tumefaciens-mediated transformation of Fusarium circinatum , 2001 .

[226]  T. Tzfira,et al.  Genetic transformation of HeLa cells by Agrobacterium. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[227]  D. Geiser,et al.  Agrobacterium-Mediated Transformation of Fusarium oxysporum: An Efficient Tool for Insertional Mutagenesis and Gene Transfer. , 2001, Phytopathology.

[228]  Bruce D.L. Fitt,et al.  Epidemiology and management of Leptosphaeria maculans (phoma stem canker) on oilseed rape in Australia, Canada and Europe , 2001 .

[229]  H. Kato.  Rice blast disease , 2001 .

[230]  W. Goldman,et al.  Intracellular parasitism by Histoplasma capsulatum: fungal virulence and calcium dependence. , 2000, Science.

[231]  Michelle C. Stone,et al.  A Fruiting Body Tissue Method for EfficientAgrobacterium-Mediated Transformation ofAgaricus bisporus , 2000, Applied and Environmental Microbiology.

[232]  W. Holloman,et al.  Shuttle vectors for genetic manipulations in Ustilago maydis. , 2000, Canadian journal of microbiology.

[233]  S. Gurr,et al.  A single amino-acid substitution in the iron-sulphur protein subunit of succinate dehydrogenase determines resistance to carboxin in Mycosphaerella graminicola , 1998, Current Genetics.

[234]  N. Dunn-Coleman,et al.  Agrobacterium T-DNA: A silver bullet for filamentous fungi? , 1998, Nature Biotechnology.

[235]  P. Hooykaas,et al.  Agrobacterium tumefaciens-mediated transformation of filamentous fungi , 1998, Nature Biotechnology.

[236]  D. Hollomon,et al.  Transformation of the phytopathogen Mycosphaerella graminicola to carbendazim and hygromycin B resistance , 1998, Current Genetics.

[237]  F. Chumley,et al.  Magnaporthe grisea pathogenicity genes obtained through insertional mutagenesis. , 1998, Molecular plant-microbe interactions : MPMI.

[238]  W. Goldman,et al.  Electrotransformation and Expression of Bacterial Genes Encoding Hygromycin Phosphotransferase and β-Galactosidase in the Pathogenic Fungus Histoplasma capsulatum , 1998, Infection and Immunity.

[239]  V. Knauf,et al.  Co-transformation with one Agrobacterium tumefaciens strain containing two binary plasmids as a method for producing marker-free transgenic plants , 1998, Plant Cell Reports.

[240]  M. Dufresne,et al.  clk1, a serine/threonine protein kinase-encoding gene, is involved in pathogenicity of Colletotrichum lindemuthianum on common bean. , 1998, Molecular plant-microbe interactions : MPMI.

[241]  A. Clutterbuck,et al.  Autonomous plasmid replication in Aspergillus nidulans: AMA1 and MATE elements. , 1997, Fungal genetics and biology : FG & B.

[242]  K. Stephens,et al.  Agrobacterium tumefaciens-mediated transformation of yeast. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[243]  P. Hooykaas,et al.  Trans‐kingdom T‐DNA transfer from Agrobacterium tumefaciens to Saccharomyces cerevisiae. , 1995, The EMBO journal.

[244]  R. Proctor,et al.  Reduced virulence of Gibberella zeae caused by disruption of a trichothecene toxin biosynthetic gene. , 1995, Molecular plant-microbe interactions : MPMI.

[245]  M. Daboussi,et al.  The nia gene of Fusarium oxysporum: isolation, sequence and development of a homologous transformation system. , 1993, Gene.

[246]  J. Perfect,et al.  Gene transfer in Cryptococcus neoformans by use of biolistic delivery of DNA , 1993, Journal of bacteriology.

[247]  K. Kwon-Chung,et al.  Isolation of the URA5 gene from Cryptococcus neoformans var. neoformans and its use as a selective marker for transformation , 1990, Molecular and cellular biology.

[248]  M. Perlin,et al.  A high efficiency transformation system for the basidiomycete Ustilago violacea employing hygromycin resistance and lithium-acetate treatment. , 1989, Gene.

[249]  H. Gilbert,et al.  Transformation of Rhodosporidium toruloides. , 1985, Gene.

[250]  K. Murata,et al.  Transformation of intact yeast cells treated with alkali cations. , 1984, Journal of bacteriology.

[251]  A. Gray,et al.  I. THE ORIGIN OF SPECIES BY MEANS OF NATURAL SELECTION , 1963 .