EXPLORING A SUBGRAPH MATCHING APPROACH FOR EXTRACTING BIOLOGICAL EVENTS FROM LITERATURE
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[1] Steven Skiena,et al. Computational Discrete Mathematics: Combinatorics and Graph Theory with Mathematica ® , 2009 .
[2] Siddhartha Jonnalagadda,et al. Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text , 2009, HLT-NAACL.
[3] Julian R. Ullmann,et al. An Algorithm for Subgraph Isomorphism , 1976, J. ACM.
[4] Claire Nedellec. Machine Learning applied to Information Extraction in specific domains — an example, gene interaction extraction from bibliography in genomics , 2002 .
[5] Isabelle Bloch,et al. Inexact graph matching by means of estimation of distribution algorithms , 2002, Pattern Recognit..
[6] Jun'ichi Tsujii,et al. A Markov Logic Approach to Bio-Molecular Event Extraction , 2009, BioNLP@HLT-NAACL.
[7] Jun'ichi Tsujii,et al. Corpus annotation for mining biomedical events from literature , 2008, BMC Bioinformatics.
[8] Fabio Rinaldi,et al. Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach , 2007, Artif. Intell. Medicine.
[9] Martin F. Porter,et al. An algorithm for suffix stripping , 1997, Program.
[10] Claire Nédellec,et al. Learning Language in Logic - Genic Interaction Extraction Challenge , 2005 .
[11] Ulf Leser,et al. Not all links are equal: Exploiting Dependency Types for the Extraction of Protein-Protein Interactions from Text , 2011, BioNLP@ACL.
[12] Christopher D. Manning,et al. The Stanford Typed Dependencies Representation , 2008, CF+CDPE@COLING.
[13] Xin-She Yang,et al. Introduction to Algorithms , 2021, Nature-Inspired Optimization Algorithms.
[14] Alexander A. Morgan,et al. Investigation of Unsupervised Pattern Learning Techniques for Bootstrap Construction of a Medical Treatment Lexicon , 2009, BioNLP@HLT-NAACL.
[15] Jari Björne,et al. A Graph Kernel for Protein-Protein Interaction Extraction , 2008, BioNLP.
[16] Ambuj K. Singh,et al. Closure-Tree: An Index Structure for Graph Queries , 2006, 22nd International Conference on Data Engineering (ICDE'06).
[17] C. Ouzounis,et al. Automatic extraction of protein interactions from scientific abstracts. , 1999, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.
[18] Daniel Jurafsky,et al. Parsing to Stanford Dependencies: Trade-offs between Speed and Accuracy , 2010, LREC.
[19] Kyu-Chul Lee,et al. Finding the evidence for protein-protein interactions from PubMed abstracts , 2006, ISMB.
[20] Sampo Pyysalo,et al. Evaluating Dependency Representations for Event Extraction , 2010, COLING.
[21] Jun'ichi Tsujii,et al. Evaluating contributions of natural language parsers to protein–protein interaction extraction , 2008, Bioinform..
[22] Jari Björne,et al. Extracting Complex Biological Events with Rich Graph-Based Feature Sets , 2009, BioNLP@HLT-NAACL.
[23] Amit P. Sheth,et al. Unsupervised Discovery of Compound Entities for Relationship Extraction , 2008, EKAW.
[24] Yusuke Miyao,et al. Challenges in Mapping of Syntactic Representations for Framework-Independent Parser Evaluation , 2007 .
[25] Jignesh M. Patel,et al. SAGA: a subgraph matching tool for biological graphs , 2007, Bioinform..
[26] Sophia Ananiadou,et al. Text Mining for Biology And Biomedicine , 2005 .
[27] Hoifung Poon,et al. Joint Inference for Knowledge Extraction from Biomedical Literature , 2010, NAACL.
[28] K. Bretonnel Cohen,et al. High-precision biological event extraction with a concept recognizer , 2009, BioNLP@HLT-NAACL.
[29] Ulf Leser,et al. A Comprehensive Benchmark of Kernel Methods to Extract Protein–Protein Interactions from Literature , 2010, PLoS Comput. Biol..
[30] Ralf Zimmer,et al. RelEx - Relation extraction using dependency parse trees , 2007, Bioinform..
[31] J. Blake,et al. Creating the Gene Ontology Resource : Design and Implementation The Gene Ontology Consortium 2 , 2001 .
[32] Junichi Tsujii,et al. Event extraction for systems biology by text mining the literature. , 2010, Trends in biotechnology.
[33] Mario Vento,et al. A (sub)graph isomorphism algorithm for matching large graphs , 2004, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[34] Mariana L. Neves,et al. Extraction of biomedical events using case-based reasoning , 2009, BioNLP@HLT-NAACL.
[35] Claire Nedellec,et al. Sentence Filtering for Information Extraction in Genomics, a Classification Problem , 2001, PKDD.
[36] Shijie Zhang,et al. GADDI: distance index based subgraph matching in biological networks , 2009, EDBT '09.
[37] Endika Bengoetxea,et al. Inexact Graph Matching Using Estimation of Distribution Algorithms , 2002 .
[38] A. Valencia,et al. Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge , 2008, Genome Biology.
[39] Dan Klein,et al. Accurate Unlexicalized Parsing , 2003, ACL.
[40] Jun'ichi Tsujii,et al. Event Extraction with Complex Event Classification Using Rich Features , 2010, J. Bioinform. Comput. Biol..
[41] Mehmet M. Dalkilic,et al. From protein-disease associations to disease informatics. , 2008, Frontiers in bioscience : a journal and virtual library.
[42] Philip S. Yu,et al. Searching Substructures with Superimposed Distance , 2006, 22nd International Conference on Data Engineering (ICDE'06).
[43] Haibin Liu,et al. Biological event extraction using subgraph matching , 2010, Semantic Mining in Biomedicine.
[44] Udo Hahn,et al. Event Extraction from Trimmed Dependency Graphs , 2009, BioNLP@HLT-NAACL.
[45] Sang Uk Lee,et al. Attributed relational graph matching based on the nested assignment structure , 2010, Pattern Recognit..
[46] Christiane Fellbaum,et al. Book Reviews: WordNet: An Electronic Lexical Database , 1999, CL.
[47] Sampo Pyysalo,et al. Overview of BioNLP’09 Shared Task on Event Extraction , 2009, BioNLP@HLT-NAACL.
[48] Ulf Leser,et al. Molecular event extraction from Link Grammar parse trees , 2009, BioNLP@HLT-NAACL.
[49] Gérard P. Huet,et al. A Unification Algorithm for Typed lambda-Calculus , 1975, Theor. Comput. Sci..
[50] Arthur C. Graesser,et al. Evaluating State-of-the-Art Treebank-style Parsers for Coh-Metrix and Other Learning Technology Environments , 2005 .
[51] David S. Johnson,et al. Computers and Intractability: A Guide to the Theory of NP-Completeness , 1978 .
[52] Vincent Ng,et al. Anaphora resolution in biomedical literature: a hybrid approach , 2012, BCB.
[53] Jari Björne,et al. BioInfer: a corpus for information extraction in the biomedical domain , 2007, BMC Bioinformatics.
[54] F Rinaldi,et al. OntoGene in BioCreative II.5 , 2010, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[55] Kaleem Siddiqi,et al. Matching Hierarchical Structures Using Association Graphs , 1998, IEEE Trans. Pattern Anal. Mach. Intell..
[56] Edwin R. Hancock,et al. Graph matching using the interference of continuous-time quantum walks , 2009, Pattern Recognit..
[57] Halil Kilicoglu,et al. Syntactic Dependency Based Heuristics for Biological Event Extraction , 2009, BioNLP@HLT-NAACL.
[58] Jakub Kanis,et al. Comparison of Different Lemmatization Approaches through the Means of Information Retrieval Performance , 2010, TSD.
[59] Caroline Gasperin,et al. Semi-supervised anaphora resolution in biomedical texts , 2006, BioNLP@NAACL-HLT.
[60] Karin M. Verspoor,et al. Pattern Learning through Distant Supervision for Extraction of Protein-Residue Associations in the Biomedical Literature , 2011, 2011 10th International Conference on Machine Learning and Applications and Workshops.
[61] Jun'ichi Tsujii,et al. GENIA corpus - a semantically annotated corpus for bio-textmining , 2003, ISMB.
[62] Sophia Ananiadou,et al. Developing a Robust Part-of-Speech Tagger for Biomedical Text , 2005, Panhellenic Conference on Informatics.
[63] Michael Krauthammer,et al. GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles , 2001, ISMB.
[64] Udo Hahn,et al. Evaluating the Impact of Alternative Dependency Graph Encodings on Solving Event Extraction Tasks , 2010, EMNLP.
[65] Martti Juhola,et al. Stemming and lemmatization in the clustering of finnish text documents , 2004, CIKM '04.
[66] Razvan C. Bunescu,et al. A Shortest Path Dependency Kernel for Relation Extraction , 2005, HLT.
[67] Ted Briscoe,et al. Statistical Anaphora Resolution in Biomedical Texts , 2008, COLING.
[68] Lipika Dey,et al. Biological relation extraction and query answering from MEDLINE abstracts using ontology-based text mining , 2007, Data Knowl. Eng..
[69] Hao Yu,et al. Discovering patterns to extract protein-protein interactions from full texts , 2004, Bioinform..
[70] Tapio Salakoski,et al. On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA , 2007, BioNLP@ACL.