Genetic modification of critical enzymes and involved genes in butanol biosynthesis from biomass.

Interest in biobutanol, a sustainable vehicle fuel, is increasing due to rising oil prices and concerns of surrounding climate change and the energy crisis. However, the costs of biobutanol with conventional ABE fermentation by Clostridium are higher than the cost of butanol from today's petrochemical processes. Two major problems in the economic production of biobutanol are difficulty controlling the induction of a metabolic shift from acidogenesis to solventogenesis and limitations imposed by severe product inhibition. With developments in biotechnology, and the completion of genome sequencing of Clostridium, genetic modification is a viable method to improve the solvent yield and the butanol production ratio. The present article aims to highlight the latest research progress on overexpressing, inserting, knocking out, and knocking down genes of the key enzymes in the ABE fermentation pathway and other relative genes (such as genes coding for heat-shock proteins, operon, transcription, etc). Recombinant manipulations of these genes in Escherichiacoli and yeast have also been reported recently, although their butanol yields are lower than in Clostridium. Butanol production with solventogenic clostridia from various feedstocks is also evaluated in this review.

[1]  F. Rudolph,et al.  Cloning, sequencing, and expression of clustered genes encoding beta-hydroxybutyryl-coenzyme A (CoA) dehydrogenase, crotonase, and butyryl-CoA dehydrogenase from Clostridium acetobutylicum ATCC 824 , 1996, Journal of bacteriology.

[2]  E. Papoutsakis,et al.  Coenzyme A transferase from Clostridium acetobutylicum ATCC 824 and its role in the uptake of acids , 1989, Applied and environmental microbiology.

[3]  E. Papoutsakis,et al.  Genome‐scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis , 2008, Biotechnology and bioengineering.

[4]  G. Bennett,et al.  Characterization of an acetyl-CoA C-acetyltransferase (thiolase) gene from Clostridium acetobutylicum ATCC 824. , 1995, Gene.

[5]  M. Inui,et al.  Degradation of Corn Fiber by Clostridium cellulovorans Cellulases and Hemicellulases and Contribution of Scaffolding Protein CbpA , 2005, Applied and Environmental Microbiology.

[6]  L. Nielsen,et al.  Fermentative butanol production by clostridia , 2008, Biotechnology and bioengineering.

[7]  Nasib Qureshi,et al.  Butanol Production from Corn Fiber Xylan Using Clostridium acetobutylicum , 2006, Biotechnology progress.

[8]  J. Andrade,et al.  Continuous cultures of Clostridium acetobutylicum: culture stability and low-grade glycerol utilisation , 2004, Biotechnology Letters.

[9]  Kevin M. Smith,et al.  Metabolic engineering of Escherichia coli for 1-butanol production. , 2008, Metabolic engineering.

[10]  George N. Bennett,et al.  Genome Sequence and Comparative Analysis of the Solvent-Producing Bacterium Clostridium acetobutylicum , 2001, Journal of bacteriology.

[11]  Y. Tashiro,et al.  Utilization of excess sludge by acetone-butanol-ethanol fermentation employing Clostridium saccharoperbutylacetonicum N1-4 (ATCC 13564). , 2005, Journal of bioscience and bioengineering.

[12]  P. Soucaille,et al.  Characterization of the CipA Scaffolding Protein and In Vivo Production of a Minicellulosome in Clostridium acetobutylicum , 2003, Journal of bacteriology.

[13]  D. Adhikari,et al.  Biomass-based energy fuel through biochemical routes: A review , 2009 .

[14]  Eleftherios T. Papoutsakis,et al.  Northern, Morphological, and Fermentation Analysis of spo0A Inactivation and Overexpression in Clostridium acetobutylicum ATCC 824 , 2002, Journal of bacteriology.

[15]  Carbon monoxide gasing leads to alcohol production and butyrate uptake without acetone formation in continuous cultures of Clostridium acetobutylicum , 1986 .

[16]  Yanning Zheng,et al.  Problems with the microbial production of butanol , 2009, Journal of Industrial Microbiology & Biotechnology.

[17]  T. Klason,et al.  Uptake and activation of acetate and butyrate in Clostridium acetobutylicum , 1984, Applied Microbiology and Biotechnology.

[18]  P. Soucaille,et al.  Regulation of carbon and electron flow in Clostridium acetobutylicum grown in chemostat culture at neutral pH on mixtures of glucose and glycerol , 1994, Journal of bacteriology.

[19]  M. Young,et al.  Butanol tolerance of Clostridium beijerinckii NCIMB 8052 associated with down-regulation of gldA by antisense RNA. , 2000, Journal of molecular microbiology and biotechnology.

[20]  E. Papoutsakis,et al.  Design of Antisense RNA Constructs for Downregulation of the Acetone Formation Pathway of Clostridium acetobutylicum , 2003, Journal of bacteriology.

[21]  Weihong Jiang,et al.  Disruption of the acetoacetate decarboxylase gene in solvent-producing Clostridium acetobutylicum increases the butanol ratio. , 2009, Metabolic engineering.

[22]  V. Zverlov,et al.  Bacterial acetone and butanol production by industrial fermentation in the Soviet Union: use of hydrolyzed agricultural waste for biorefinery , 2006, Applied Microbiology and Biotechnology.

[23]  G. Bennett,et al.  Cloning, sequencing, and expression of genes encoding phosphotransacetylase and acetate kinase from Clostridium acetobutylicum ATCC 824 , 1996, Applied and environmental microbiology.

[24]  H. Fierobe,et al.  Production of Heterologous and Chimeric Scaffoldins by Clostridium acetobutylicum ATCC 824 , 2004, Journal of bacteriology.

[25]  T. Ezeji,et al.  Butanol production from agricultural residues: Impact of degradation products on Clostridium beijerinckii growth and butanol fermentation , 2007, Biotechnology and bioengineering.

[26]  E. Papoutsakis,et al.  Cloning, structure, and expression of acid and solvent pathway genes of Clostridium acetobutylicum. , 1993, Biotechnology.

[27]  I. Maddox,et al.  The acetone-butanol-ethanol fermentation: a current assessment , 1986 .

[28]  D. T. Jones,et al.  Acetone-butanol fermentation revisited. , 1986, Microbiological reviews.

[29]  H. Bahl,et al.  Molecular characterization of the dnaK gene region of Clostridium acetobutylicum, including grpE, dnaJ, and a new heat shock gene , 1992, Journal of bacteriology.

[30]  E. Papoutsakis,et al.  Purification and characterization of the NADH-dependent butanol dehydrogenase from Clostridium acetobutylicum (ATCC 824). , 1989, Archives of biochemistry and biophysics.

[31]  P. Rogers,et al.  Purification and properties of the inducible coenzyme A-linked butyraldehyde dehydrogenase from Clostridium acetobutylicum , 1988, Journal of bacteriology.

[32]  E. Papoutsakis,et al.  Transcriptional Analysis of spo0A Overexpression in Clostridium acetobutylicum and Its Effect on the Cell's Response to Butanol Stress , 2004, Journal of bacteriology.

[33]  David T. Jones,et al.  Taxonomy and phylogeny of industrial solvent-producing clostridia. , 1995, International journal of systematic bacteriology.

[34]  T. Ezeji,et al.  Bioproduction of butanol from biomass: from genes to bioreactors. , 2007, Current opinion in biotechnology.

[35]  E. Papoutsakis,et al.  Phosphotransbutyrylase from Clostridium acetobutylicum ATCC 824 and its role in acidogenesis , 1989, Applied and environmental microbiology.

[36]  R. Hill,et al.  Purification and characterization of crotonase from Clostridium acetobutylicum. , 1972, The Journal of biological chemistry.

[37]  Nasib Qureshi,et al.  Butanol production by Clostridium beijerinckii. Part I: use of acid and enzyme hydrolyzed corn fiber. , 2008, Bioresource technology.

[38]  E. Papoutsakis,et al.  Dynamics of Genomic-Library Enrichment and Identification of Solvent Tolerance Genes for Clostridium acetobutylicum , 2007, Applied and Environmental Microbiology.

[39]  Nasib Qureshi,et al.  Butanol production from wheat straw hydrolysate using Clostridium beijerinckii , 2007, Bioprocess and biosystems engineering.

[40]  Edward M. Rubin,et al.  Genomics of cellulosic biofuels , 2008, Nature.

[41]  M. Hartmanis Butyrate kinase from Clostridium acetobutylicum. , 1987, The Journal of biological chemistry.

[42]  Hubert Bahl,et al.  Level of enzymes involved in acetate, butyrate, acetone and butanol formation by Clostridium acetobutylicum , 1983, European journal of applied microbiology and biotechnology.

[43]  G. Bennett,et al.  Purification of acetoacetate decarboxylase from Clostridium acetobutylicum ATCC 824 and cloning of the acetoacetate decarboxylase gene in Escherichia coli , 1990, Applied and environmental microbiology.

[44]  G. Bennett,et al.  Molecular cloning of an alcohol (butanol) dehydrogenase gene cluster from Clostridium acetobutylicum ATCC 824 , 1991, Journal of bacteriology.

[45]  M. Inui,et al.  Expression of Clostridium acetobutylicum butanol synthetic genes in Escherichia coli , 2008, Applied Microbiology and Biotechnology.

[46]  H. Petitdemange,et al.  Acetone-butanol production from pentoses by Clostridium acetobutylicum , 2004, Biotechnology Letters.

[47]  C. Tomas,et al.  Transcriptional Analysis of Butanol Stress and Tolerance in Clostridium acetobutylicum , 2004, Journal of bacteriology.

[48]  D. T. Jones,et al.  Emended descriptions of Clostridium acetobutylicum and Clostridium beijerinckii, and descriptions of Clostridium saccharoperbutylacetonicum sp. nov. and Clostridium saccharobutylicum sp. nov. , 2001, International journal of systematic and evolutionary microbiology.

[49]  E. Papoutsakis,et al.  Characterization of recombinant strains of the Clostridium acetobutylicum butyrate kinase inactivation mutant: need for new phenomenological models for solventogenesis and butanol inhibition? , 2000, Biotechnology and bioengineering.

[50]  E. Papoutsakis,et al.  Metabolic engineering of Clostridium acetobutylicum ATCC 824 for increased solvent production by enhancement of acetone formation enzyme activities using a synthetic acetone operon , 1993, Biotechnology and bioengineering.

[51]  Y. Ni,et al.  Recent progress on industrial fermentative production of acetone–butanol–ethanol by Clostridium acetobutylicum in China , 2009, Applied Microbiology and Biotechnology.

[52]  H. Fierobe,et al.  Heterologous Production, Assembly, and Secretion of a Minicellulosome by Clostridium acetobutylicum ATCC 824 , 2005, Applied and Environmental Microbiology.

[53]  David T. Jones,et al.  Cloning and Expression of a Clostridium acetobutylicum Alcohol Dehydrogenase Gene in Escherichia coli , 1988, Applied and environmental microbiology.

[54]  H. Blaschek,et al.  Acetate enhances solvent production and prevents degeneration in Clostridium beijerinckii BA101 , 1999, Applied Microbiology and Biotechnology.

[55]  H. Petitdemange,et al.  Regulation of acetate kinase and butyrate kinase by acids in Clostridium acetobutylicum , 1986 .

[56]  P. Dürre Biobutanol: An attractive biofuel , 2007, Biotechnology journal.

[57]  G. Bennett,et al.  Structural correlations of activity of Clostridium acetobutylicum ATCC 824 butyrate kinase isozymes , 2010 .

[58]  M. Pallen,et al.  Genomic analysis of the protein secretion systems in Clostridium acetobutylicum ATCC 824. , 2005, Biochimica et biophysica acta.

[59]  M. Scotcher,et al.  Expression of abrB310 and sinR, and Effects of Decreased abrB310 Expression on the Transition from Acidogenesis to Solventogenesis, in Clostridium acetobutylicum ATCC 824 , 2005, Applied and Environmental Microbiology.

[60]  J. Liao,et al.  Metabolic engineering for advanced biofuels production from Escherichia coli. , 2008, Current opinion in biotechnology.

[61]  C. Tomas,et al.  Overexpression of groESL in Clostridium acetobutylicum Results in Increased Solvent Production and Tolerance, Prolonged Metabolism, and Changes in the Cell's Transcriptional Program , 2003, Applied and Environmental Microbiology.

[62]  Alyssa M. Redding,et al.  Metabolic engineering of Saccharomyces cerevisiae for the production of n-butanol , 2008, Microbial cell factories.