Prediction of Bacterial and Archaeal Allergenicity with AllPred Program

[1]  M. Chapman.  Allergen nomenclature. , 2020, Clinical allergy and immunology.

[2]  S. Albers.  Extremophiles: Life at the deep end , 2016, Nature.

[3]  S. Lynch.  Gut Microbiota and Allergic Disease. New Insights. , 2016, Annals of the American Thoracic Society.

[4]  Bulat S. Zuraev,et al.  Web application for automatic prediction of gene translation elongation efficiency , 2015, J. Integr. Bioinform..

[5]  Y. Matushkin,et al.  EloE: Web application for estimation of gene translation elongation efficiency , 2015, Russian Journal of Genetics: Applied Research.

[6]  María Martín,et al.  UniProt: A hub for protein information , 2015 .

[7]  The Uniprot Consortium,et al.  UniProt: a hub for protein information , 2014, Nucleic Acids Res..

[8]  SaravananVijayakumar,et al.  Fuzzy logic for personalized healthcare and diagnostics: FuzzyApp--a fuzzy logic based allergen-protein predictor. , 2014 .

[9]  Darren R. Flower,et al.  AllerTOP v.2—a server for in silico prediction of allergens , 2014, Journal of Molecular Modeling.

[10]  Ha X. Dang,et al.  Allerdictor: fast allergen prediction using text classification techniques , 2014, Bioinform..

[11]  Irini A. Doytchinova,et al.  AllergenFP: allergenicity prediction by descriptor fingerprints , 2014, Bioinform..

[12]  N. Kolchanov,et al.  Computerized analysis of the relationship between allergenicity of microorganisms and their habitats , 2013, Russian Journal of Genetics: Applied Research.

[13]  T. Sweeney,et al.  The human gut microbiome: a review of the effect of obesity and surgically induced weight loss. , 2013, JAMA surgery.

[14]  Vladimir A Ivanisenko,et al.  Accuracy of protein allergenicity prediction can be improved by taking into account data on allergenic protein discontinuous peptides , 2013, Journal of biomolecular structure & dynamics.

[15]  T. Platts-Mills.  Allergy in evolution. , 2012, Chemical immunology and allergy.

[16]  Tatiana A. Tatusova,et al.  BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata , 2011, Nucleic Acids Res..

[17]  A. Heratizadeh,et al.  Immunoglobulin E antibody reactivity to bacterial antigens in atopic dermatitis patients , 2011, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

[18]  C. Bachert,et al.  Th2-associated immunity to bacteria in teenagers and susceptibility to asthma , 2010, European Respiratory Journal.

[19]  A. Falsey,et al.  Randomized, double-blind controlled phase 3 trial comparing the immunogenicity of high-dose and standard-dose influenza vaccine in adults 65 years of age and older. , 2009, The Journal of infectious diseases.

[20]  Joo Chuan Tong,et al.  AllerHunter: A SVM-Pairwise System for Assessment of Allergenicity and Allergic Cross-Reactivity in Proteins , 2009, PloS one.

[21]  J. Jenkins,et al.  Evolutionary distance from human homologs reflects allergenicity of animal food proteins. , 2007, The Journal of allergy and clinical immunology.

[22]  N. Vladimirov,et al.  Correlation of codon biases and potential secondary structures with mRNA translation efficiency in unicellular organisms , 2007, Molecular Biology.

[23]  Gajendra P. S. Raghava,et al.  AlgPred: prediction of allergenic proteins and mapping of IgE epitopes , 2006, Nucleic Acids Res..

[24]  Arun Krishnan,et al.  Predicting allergenic proteins using wavelet transform , 2004, Bioinform..

[25]  J. Irwin,et al.  Extremophiles and their application to veterinary medicine , 2004, Irish veterinary journal.

[26]  Michael B. Stadler,et al.  Allergenicity prediction by protein sequence , 2003, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[27]  Bertus van den Burg,et al.  Extremophiles as a source for novel enzymes. , 2003 .

[28]  B. Vargaftig,et al.  Effects of Mycobacterium bovis BCG on the development of allergic inflammation and bronchial hyperresponsiveness in hyper-IgE BP2 mice vaccinated as newborns. , 2001, Vaccine.

[29]  S. Karlin,et al.  Predicted Highly Expressed Genes of Diverse Prokaryotic Genomes , 2000, Journal of bacteriology.

[30]  E. Pennisi.  Biotechnology: In Industry, Extremophiles Begin to Make Their Mark , 1997, Science.

[31]  G. Poland,et al.  A comparative trial of standard or high-dose S subunit recombinant hepatitis B vaccine versus a vaccine containing S subunit, pre-S1, and pre-S2 particles for revaccination of healthy adult nonresponders. , 1997, The Journal of infectious diseases.

[32]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[33]  D. P. Strachan,et al.  Hay fever, hygiene, and household size. , 1989, BMJ.

[34]  Ailin Tao,et al.  Bioinformatics Methods to Predict Allergen Epitopes , 2015 .

[35]  V. Saravanan,et al.  Fuzzy logic for personalized healthcare and diagnostics: FuzzyApp--a fuzzy logic based allergen-protein predictor. , 2014, Omics : a journal of integrative biology.

[36]  G. Nardone,et al.  The role of gut microbiota in the pathogenesis and management of allergic diseases. , 2013, European review for medical and pharmacological sciences.

[37]  Keng Wah Choo,et al.  Improved Prediction of Allergenicity by Combination of Multiple Sequence Motifs , 2007, Silico Biol..

[38]  C. Vorgias,et al.  Extreme environments as a resource for microorganisms and novel biocatalysts. , 2005, Advances in biochemical engineering/biotechnology.

[39]  Mats G. Gustafsson,et al.  Prediction of food protein allergenicity: a bioinformatic learning systems approach , 2002, Silico Biol..