Abundance and diversity of mucosa-associated hydrogenotrophic microbes in the healthy human colon

[1]  Nico Boon,et al.  PCR-based community structure studies of bacteria associated with eukaryotic organisms: a simple PCR strategy to avoid co-amplification of eukaryotic DNA. , 2011, Journal of microbiological methods.

[2]  Jonathan M. Chase,et al.  Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist. , 2011, Ecology letters.

[3]  J. Padmanabha,et al.  Functional Gene Analysis Suggests Different Acetogen Populations in the Bovine Rumen and Tammar Wallaby Forestomach , 2010, Applied and Environmental Microbiology.

[4]  K. Timmis,et al.  Halophilic archaea in the human intestinal mucosa. , 2010, Environmental microbiology.

[5]  J. Faith,et al.  Dissecting the in Vivo Metabolic Potential of Two Human Gut Acetogens , 2010, The Journal of Biological Chemistry.

[6]  R. Mackie,et al.  Mechanisms of microbial hydrogen disposal in the human colon and implications for health and disease. , 2010, Annual review of food science and technology.

[7]  M. Pimentel,et al.  Methane and the Gastrointestinal Tract , 2010, Digestive Diseases and Sciences.

[8]  M. Crowell,et al.  Human gut microbiota in obesity and after gastric bypass , 2009, Proceedings of the National Academy of Sciences.

[9]  B. Roe,et al.  A core gut microbiome in obese and lean twins , 2008, Nature.

[10]  M. Alric,et al.  A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene. , 2008, Research in microbiology.

[11]  S. Vermeire,et al.  Coamplification of Eukaryotic DNA with 16S rRNA Gene-Based PCR Primers: Possible Consequences for Population Fingerprinting of Complex Microbial Communities , 2008, Current Microbiology.

[12]  F. Shanahan,et al.  Human methanogen diversity and incidence in healthy and diseased colonic groups using mcrA gene analysis , 2008, BMC Microbiology.

[13]  E. Kramarsky-Winter,et al.  Characterization of black band disease in Red Sea stony corals. , 2007, Environmental microbiology.

[14]  M. Nei,et al.  MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. , 2007, Molecular biology and evolution.

[15]  R. Wilson,et al.  Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut , 2007, Proceedings of the National Academy of Sciences.

[16]  A. Schmalenberger,et al.  High unique diversity of sulfate-reducing prokaryotes characterized in a depth gradient in an acidic fen. , 2007, Environmental microbiology.

[17]  M. Wagner,et al.  Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea. , 2007, Environmental microbiology.

[18]  Michiel Kleerebezem,et al.  Isolation of DNA from bacterial samples of the human gastrointestinal tract , 2006, Nature Protocols.

[19]  M. Kuskowski,et al.  Stability of human methanogenic flora over 35 years and a review of insights obtained from breath methane measurements. , 2006, Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association.

[20]  M. Attene-Ramos,et al.  Evidence That Hydrogen Sulfide Is a Genotoxic Agent , 2006, Molecular Cancer Research.

[21]  G. Muyzer,et al.  Phylogenetic relationships ofThiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments , 1995, Archives of Microbiology.

[22]  F. Costello,et al.  T-Align, a web-based tool for comparison of multiple terminal restriction fragment length polymorphism profiles. , 2005, FEMS microbiology ecology.

[23]  E. Purdom,et al.  Diversity of the Human Intestinal Microbial Flora , 2005, Science.

[24]  E. Urbán,et al.  Two intriguing Bilophila wadsworthia cases from Hungary. , 2004, Journal of medical microbiology.

[25]  G. Macfarlane,et al.  Identification and quantitation of mucosal and faecal desulfovibrios using real time polymerase chain reaction , 2004, Gut.

[26]  W. Babidge,et al.  Colonic Sulfide in Pathogenesis and Treatment of Ulcerative Colitis , 1997, Digestive Diseases and Sciences.

[27]  T. Miller,et al.  Methanosphaera stadtmaniae gen. nov., sp. nov.: a species that forms methane by reducing methanol with hydrogen , 1985, Archives of Microbiology.

[28]  E. Delong,et al.  Identification of Methyl Coenzyme M Reductase A (mcrA) Genes Associated with Methane-Oxidizing Archaea , 2003, Applied and Environmental Microbiology.

[29]  D. Stahl,et al.  Molecular Characterization of Sulfate-Reducing Bacteria in the Guaymas Basin , 2003, Applied and Environmental Microbiology.

[30]  E. Zoetendal,et al.  Mucosa-Associated Bacteria in the Human Gastrointestinal Tract Are Uniformly Distributed along the Colon and Differ from the Community Recovered from Feces , 2002, Applied and Environmental Microbiology.

[31]  I. Pereira,et al.  Sulfate-reducing bacteria in human feces and their association with inflammatory bowel diseases. , 2002, FEMS microbiology ecology.

[32]  C. R. Lovell,et al.  Recovery and Analysis of Formyltetrahydrofolate Synthetase Gene Sequences from Natural Populations of Acetogenic Bacteria , 2001, Applied and Environmental Microbiology.

[33]  Michael Friedrich,et al.  Dissimilatory Sulfite Reductase (Desulfoviridin) of the Taurine-Degrading, Non-Sulfate-Reducing Bacterium Bilophila wadsworthia RZATAU Contains a Fused DsrB-DsrD Subunit , 2001, Journal of bacteriology.

[34]  Ø. Hammer,et al.  PAST: PALEONTOLOGICAL STATISTICAL SOFTWARE PACKAGE FOR EDUCATION AND DATA ANALYSIS , 2001 .

[35]  O Hammer-Muntz,et al.  PAST: paleontological statistics software package for education and data analysis version 2.09 , 2001 .

[36]  I. Beech,et al.  Screening of sulfate-reducing bacteria in colonoscopy samples from healthy and colitic human gut mucosa. , 2000, FEMS microbiology ecology.

[37]  K. Daly,et al.  Development of oligonucleotide probes and PCR primers for detecting phylogenetic subgroups of sulfate-reducing bacteria. , 2000, Microbiology.

[38]  Michael Wagner,et al.  Phylogeny of Dissimilatory Sulfite Reductases Supports an Early Origin of Sulfate Respiration , 1998, Journal of bacteriology.

[39]  W. Liesack,et al.  Diversity and Structure of the Methanogenic Community in Anoxic Rice Paddy Soil Microcosms as Examined by Cultivation and Direct 16S rRNA Gene Sequence Retrieval , 1998, Applied and Environmental Microbiology.

[40]  J. Furne,et al.  Fecal Hydrogen Sulfide Production in Ulcerative Colitis , 1998, American Journal of Gastroenterology.

[41]  Hans H. Cheng,et al.  Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA , 1997, Applied and environmental microbiology.

[42]  Gapped BLAST and PSI-BLAST: A new , 1997 .

[43]  F. Bornet,et al.  Relations between transit time, fermentation products, and hydrogen consuming flora in healthy humans. , 1996, Gut.

[44]  G. Gibson,et al.  Acetogenesis from H2 and CO2 by methane and non-methane producing human colonic bacteria , 1996 .

[45]  J. Saunders,et al.  Isolation and identification of methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis , 1996, Applied and environmental microbiology.

[46]  J. Doré,et al.  Enumeration of H2-utilizing methanogenic archaea, acetogenic and sulfate-reducing bacteria from human feces , 1995 .

[47]  C. Woese,et al.  Partial gene sequences for the A subunit of methyl-coenzyme M reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae. , 1995, International journal of systematic bacteriology.

[48]  J. Furne,et al.  Methanogens outcompete sulphate reducing bacteria for H2 in the human colon. , 1994, Gut.

[49]  G. Macfarlane,et al.  Metabolic interactions involving sulphate‐reducing and methanogenic bacteria in the human large intestine , 1993 .

[50]  G. Gibson,et al.  Role of dietary sulphate in the regulation of methanogenesis in the human large intestine. , 1992, Gut.

[51]  G. Macfarlane,et al.  Comparison of fermentation reactions in different regions of the human colon. , 1992, The Journal of applied bacteriology.

[52]  T. Miller,et al.  Incidence of methanogenic bacteria in a sigmoidoscopy population: an association of methanogenic bacteria and diverticulosis. , 1986, Gut.

[53]  A. Macario,et al.  Isolation of Methanobrevibacter smithii from human feces , 1982, Applied and environmental microbiology.

[54]  C. J. Smith,et al.  Introduction to metabolic activities of intestinal bacteria. , 1979, The American journal of clinical nutrition.

[55]  J. Bond,et al.  FACTORS INFLUENCING PULMONARY METHANE EXCRETION IN MAN , 1971, The Journal of experimental medicine.