Target specificity of the CRISPR-Cas9 system
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[1] J. Durocher,et al. Mutation detection using Surveyor nuclease. , 2004, BioTechniques.
[2] David R. Liu,et al. High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity , 2013, Nature Biotechnology.
[3] F. Zhang,et al. CRISPR/Cas9 for genome editing: progress, implications and challenges. , 2014, Human molecular genetics.
[4] D. Trouche,et al. Quantifying DNA double-strand breaks induced by site-specific endonucleases in living cells by ligation-mediated purification , 2014, Nature Protocols.
[5] Jennifer A. Doudna,et al. DNA interrogation by the CRISPR RNA-guided endonuclease Cas9 , 2014, Nature.
[6] J. Keith Joung,et al. Broad Specificity Profiling of TALENs Results in Engineered Nucleases With Improved DNA Cleavage Specificity , 2014, Nature Methods.
[7] M. Boutros,et al. E-CRISP: fast CRISPR target site identification , 2014, Nature Methods.
[8] Chad A. Cowan,et al. Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing. , 2014, Cell stem cell.
[9] Martin J. Aryee,et al. Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing , 2014, Nature Biotechnology.
[10] Drena Dobbs,et al. ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool , 2010, Nucleic Acids Res..
[11] James E. DiCarlo,et al. RNA-Guided Human Genome Engineering via Cas9 , 2013, Science.
[12] R. Terns,et al. CRISPR-based adaptive immune systems. , 2011, Current opinion in microbiology.
[13] Daesik Kim,et al. Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins , 2014, Genome research.
[14] E. Lander,et al. Genetic Screens in Human Cells Using the CRISPR-Cas9 System , 2013, Science.
[15] J. Bitinaite,et al. FokI dimerization is required for DNA cleavage. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[16] Kun Zhang,et al. Whole-genome sequencing analysis reveals high specificity of CRISPR/Cas9 and TALEN-based genome editing in human iPSCs. , 2014, Cell stem cell.
[17] David A. Scott,et al. Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity , 2013, Cell.
[18] R. Maehr,et al. Cas9 effector-mediated regulation of transcription and differentiation in human pluripotent stem cells , 2014, Development.
[19] Henriette O'Geen,et al. A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture , 2014, bioRxiv.
[20] Hans Clevers,et al. Functional repair of CFTR by CRISPR/Cas9 in intestinal stem cell organoids of cystic fibrosis patients. , 2013, Cell stem cell.
[21] E. Lander,et al. Development and Applications of CRISPR-Cas 9 for Genome Engineering , 2015 .
[22] Jin-Soo Kim,et al. Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases , 2014, Genome research.
[23] Jin-Soo Kim,et al. Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases , 2014, Bioinform..
[24] David A. Scott,et al. Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells , 2014, Nature Biotechnology.
[25] Hao Yin,et al. Genome editing with Cas9 in adult mice corrects a disease mutation and phenotype , 2014, Nature Biotechnology.
[26] J. Keith Joung,et al. Improving CRISPR-Cas nuclease specificity using truncated guide RNAs , 2014, Nature Biotechnology.
[27] J. Doudna,et al. A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity , 2012, Science.
[28] Le Cong,et al. Multiplex Genome Engineering Using CRISPR/Cas Systems , 2013, Science.
[29] Matthew C. Canver,et al. Characterization of Genomic Deletion Efficiency Mediated by Clustered Regularly Interspaced Palindromic Repeats (CRISPR)/Cas9 Nuclease System in Mammalian Cells*♦ , 2014, The Journal of Biological Chemistry.
[30] Susan R. Wente,et al. Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system , 2013, Proceedings of the National Academy of Sciences.
[31] Botao Zhang,et al. Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis , 2014, Proceedings of the National Academy of Sciences.
[32] George M. Church,et al. CasFinder: Flexible algorithm for identifying specific Cas9 targets in genomes , 2014, bioRxiv.
[33] Yarden Katz,et al. Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system , 2013, Cell Research.
[34] P. Sternberg,et al. Transgene-Free Genome Editing in Caenorhabditis elegans Using CRISPR-Cas , 2013, Genetics.
[35] Bo Zhang,et al. CasOT: a genome-wide Cas9/gRNA off-target searching tool , 2014, Bioinform..
[36] Jörg Vogel,et al. Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis. , 2013, Molecular cell.
[37] Weiguo Zheng,et al. A Guide RNA Sequence Design Platform for the CRISPR/Cas9 System for Model Organism Genomes , 2013, BioMed research international.
[38] Luke A. Gilbert,et al. CRISPR interference (CRISPRi) for sequence-specific control of gene expression , 2013, Nature Protocols.
[39] Feng Zhang,et al. CRISPR-assisted editing of bacterial genomes , 2013, Nature Biotechnology.
[40] Bradley E. Bernstein,et al. In silico abstraction of zinc finger nuclease cleavage profiles reveals an expanded landscape of off-target sites , 2013, Nucleic acids research.
[41] E. Lander,et al. Development and Applications of CRISPR-Cas9 for Genome Engineering , 2014, Cell.
[42] R. Barrangou,et al. CRISPR/Cas, the Immune System of Bacteria and Archaea , 2010, Science.
[43] Mazhar Adli,et al. Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease , 2014, Nature Biotechnology.
[44] P. Park. ChIP–seq: advantages and challenges of a maturing technology , 2009, Nature Reviews Genetics.
[45] Rodolphe Barrangou,et al. CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity. , 2014, Molecular cell.
[46] Suresh Ramakrishna,et al. Gene disruption by cell-penetrating peptide-mediated delivery of Cas9 protein and guide RNA , 2014, Genome research.
[47] Luke A. Gilbert,et al. CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes , 2013, Cell.
[48] C. Rubinstein,et al. Highly Specific and Efficient CRISPR/Cas9-Catalyzed Homology-Directed Repair in Drosophila , 2014, Genetics.
[49] Peter Krawitz,et al. Efficient CRISPR/Cas9 genome editing with low off-target effects in zebrafish , 2013, Development.
[50] Alexander van Oudenaarden,et al. Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins , 2013, Proceedings of the National Academy of Sciences.
[51] Daniel F. Voytas,et al. Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool , 2007, Nucleic Acids Res..
[52] T. Lu,et al. Tunable and Multifunctional Eukaryotic Transcription Factors Based on CRISPR/Cas , 2013, ACS synthetic biology.
[53] Jian‐Kang Zhu,et al. The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation. , 2014, Plant biotechnology journal.
[54] M. Rowicka,et al. Nucleotide-resolution DNA double-strand breaks mapping by next-generation sequencing , 2013, Nature Methods.
[55] Prashant Mali,et al. Orthogonal Cas9 Proteins for RNA-Guided Gene Regulation and Editing , 2013, Nature Methods.
[56] Stan J. J. Brouns,et al. CRISPR-based adaptive and heritable immunity in prokaryotes. , 2009, Trends in biochemical sciences.
[57] George M. Church,et al. CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing , 2014, Nucleic Acids Res..
[58] Wei Tang,et al. Correction of a genetic disease in mouse via use of CRISPR-Cas9. , 2013, Cell stem cell.
[59] J. Keith Joung,et al. High frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells , 2013, Nature Biotechnology.
[60] R. Weiss,et al. CRISPR transcriptional repression devices and layered circuits in mammalian cells , 2014, Nature Methods.
[61] Eli J. Fine,et al. DNA targeting specificity of RNA-guided Cas9 nucleases , 2013, Nature Biotechnology.
[62] Luke A. Gilbert,et al. Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression , 2013, Cell.
[63] G. Church,et al. Cas9 as a versatile tool for engineering biology , 2013, Nature Methods.
[64] Jeffry D. Sander,et al. CRISPR-Cas systems for editing, regulating and targeting genomes , 2014, Nature Biotechnology.
[65] Stan J. J. Brouns,et al. Evolution and classification of the CRISPR–Cas systems , 2011, Nature Reviews Microbiology.
[66] Christopher M. Vockley,et al. RNA-guided gene activation by CRISPR-Cas9-based transcription factors , 2013, Nature Methods.
[67] J. Cigudosa,et al. Engineering human tumour-associated chromosomal translocations with the RNA-guided CRISPR–Cas9 system , 2014, Nature Communications.
[68] Jeffrey C. Miller,et al. An unbiased genome-wide analysis of zinc-finger nuclease specificity , 2011, Nature Biotechnology.
[69] R. Jaenisch,et al. One-Step Generation of Mice Carrying Reporter and Conditional Alleles by CRISPR/Cas-Mediated Genome Engineering , 2013, Cell.
[70] Gang Bao,et al. CRISPR/Cas9 systems have off-target activity with insertions or deletions between target DNA and guide RNA sequences , 2014, Nucleic acids research.
[71] Feng Zhang,et al. Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA , 2014, Cell.
[72] G. Church,et al. CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering , 2013, Nature Biotechnology.
[73] H. Deveau,et al. CRISPR/Cas system and its role in phage-bacteria interactions. , 2010, Annual review of microbiology.
[74] David R. Liu,et al. Revealing Off-Target Cleavage Specificities of Zinc Finger Nucleases by In Vitro Selection , 2011, Nature Methods.
[75] D. Carroll. Staying on target with CRISPR-Cas , 2013, Nature Biotechnology.
[76] J. Sklar,et al. Detection of mutations by cleavage of DNA heteroduplexes with bacteriophage resolvases , 1995, Nature Genetics.
[77] Bo Zhang,et al. Chromosomal deletions and inversions mediated by TALENs and CRISPR/Cas in zebrafish , 2013, Nucleic acids research.
[78] Jean-Paul Concordet,et al. Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair , 2014, Genome research.
[79] L. Nissim,et al. Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells. , 2014, Molecular cell.
[80] Philippe Horvath,et al. The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA , 2010, Nature.
[81] David R. Liu,et al. Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification , 2014, Nature Biotechnology.
[82] L. Marraffini,et al. CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea , 2010, Nature Reviews Genetics.
[83] Xingxu Huang,et al. sgRNAcas9: A Software Package for Designing CRISPR sgRNA and Evaluating Potential Off-Target Cleavage Sites , 2014, PloS one.