Performance of four modern whole genome amplification methods for copy number variant detection in single cells

[1]  Chad A. Shaw,et al.  Evidence for feasibility of fetal trophoblastic cell‐based noninvasive prenatal testing† , 2016, Prenatal diagnosis.

[2]  B. Menten,et al.  Performance of a TthPrimPol-based whole genome amplification kit for copy number alteration detection using massively parallel sequencing , 2016, Scientific Reports.

[3]  Yulan Sun,et al.  Tumor heterogeneity and circulating tumor cells. , 2016, Cancer letters.

[4]  B. Menten,et al.  Shallow whole genome sequencing is well suited for the detection of chromosomal aberrations in human blastocysts. , 2015, Fertility and sterility.

[5]  N. Tõnisson,et al.  Somatic mosaicism for copy-neutral loss of heterozygosity and DNA copy number variations in the human genome , 2015, BMC Genomics.

[6]  Sijia Lu,et al.  Single-Cell Whole-Genome Amplification and Sequencing: Methodology and Applications. , 2015, Annual review of genomics and human genetics.

[7]  Ting Wang,et al.  Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing , 2015, GigaScience.

[8]  B. Menten,et al.  Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method , 2015, Scientific Reports.

[9]  D. Cram,et al.  The Performance of Whole Genome Amplification Methods and Next-Generation Sequencing for Pre-Implantation Genetic Diagnosis of Chromosomal Abnormalities. , 2015, Journal of genetics and genomics = Yi chuan xue bao.

[10]  Tom Sante,et al.  ViVar: A Comprehensive Platform for the Analysis and Visualization of Structural Genomic Variation , 2014, PloS one.

[11]  Pieter Wesseling,et al.  DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly , 2014, Genome research.

[12]  Nicolò Manaresi,et al.  Molecular profiling of single circulating tumor cells with diagnostic intention , 2014, EMBO molecular medicine.

[13]  Charles Gawad,et al.  A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods , 2014, PloS one.

[14]  Jenny C. Taylor,et al.  Clinical utilisation of a rapid low-pass whole genome sequencing technique for the diagnosis of aneuploidy in human embryos prior to implantation , 2014, Journal of Medical Genetics.

[15]  F. Kokocinski,et al.  Development and validation of a next-generation sequencing-based protocol for 24-chromosome aneuploidy screening of embryos. , 2014, Fertility and sterility.

[16]  Aviv Regev,et al.  Whole exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer , 2014, Nature Biotechnology.

[17]  I. Macaulay,et al.  Single Cell Genomics: Advances and Future Perspectives , 2014, PLoS genetics.

[18]  Ira M. Hall,et al.  Mosaic Copy Number Variation in Human Neurons , 2013, Science.

[19]  ENCODEConsortium,et al.  An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.

[20]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[21]  C. Cole,et al.  COSMIC: the catalogue of somatic mutations in cancer , 2011, Genome Biology.

[22]  Mingming Jia,et al.  COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer , 2010, Nucleic Acids Res..

[23]  M. Wigler,et al.  Circular binary segmentation for the analysis of array-based DNA copy number data. , 2004, Biostatistics.

[24]  S. Kingsmore,et al.  Comprehensive human genome amplification using multiple displacement amplification , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[25]  M. Prokocimer,et al.  Establishment of a human T-acute lymphoblastic leukemia cell line with a (16;20) chromosome translocation. , 1990, Cancer genetics and cytogenetics.

[26]  R. H. Kent,et al.  The Mean Square Successive Difference , 1941 .

[27]  Susan Done,et al.  Whole-Genome Amplification by Degenerate Oligonucleotide Primed PCR (DOP-PCR). , 2008, CSH protocols.

[28]  A. Skowron,et al.  Methodology and applications , 1998 .