Transcriptome alteration in Phytophthora infestans in response to phenazine-1-carboxylic acid production by Pseudomonas fluorescens strain LBUM223

[1]  Audrey M. V. Ah-Fong,et al.  Lifestyle, gene gain and loss, and transcriptional remodeling cause divergence in the transcriptomes of Phytophthora infestans and Pythium ultimum during potato tuber colonization , 2017, BMC Genomics.

[2]  M. Filion,et al.  Biocontrol through antibiosis: exploring the role played by subinhibitory concentrations of antibiotics in soil and their impact on plant pathogens , 2017 .

[3]  A. Matsuzawa Thioredoxin and redox signaling: Roles of the thioredoxin system in control of cell fate. , 2017, Archives of biochemistry and biophysics.

[4]  M. Filion,et al.  Phenazine-1-Carboxylic Acid Production by Pseudomonas fluorescens LBUM636 Alters Phytophthora infestans Growth and Late Blight Development. , 2017, Phytopathology.

[5]  Audrey M. V. Ah-Fong,et al.  RNA-seq of life stages of the oomycete Phytophthora infestans reveals dynamic changes in metabolic, signal transduction, and pathogenesis genes and a major role for calcium signaling in development , 2017, BMC Genomics.

[6]  E. Huitema,et al.  A Perspective on CRN Proteins in the Genomics Age: Evolution, Classification, Delivery and Function Revisited , 2017, Front. Plant Sci..

[7]  Audrey M. V. Ah-Fong,et al.  Gene Expression and Silencing Studies in Phytophthora infestans Reveal Infection-Specific Nutrient Transporters and a Role for the Nitrate Reductase Pathway in Plant Pathogenesis , 2016, PLoS pathogens.

[8]  G. Zhong,et al.  The Effect of Phenazine-1-Carboxylic Acid on the Morphological, Physiological, and Molecular Characteristics of Phellinus noxius , 2016, Molecules.

[9]  C. Goyer,et al.  Pseudomonas fluorescens LBUM223 Increases Potato Yield and Reduces Common Scab Symptoms in the Field. , 2015, Phytopathology.

[10]  D. Joly,et al.  Complete Genome Sequence of Biocontrol Strain Pseudomonas fluorescens LBUM223 , 2015, Genome Announcements.

[11]  Z. Fei,et al.  Acquired Resistance to Mefenoxam in Sensitive Isolates of Phytophthora infestans. , 2015, Phytopathology.

[12]  Fredrik Levander,et al.  Quantitative label-free phosphoproteomics of six different life stages of the late blight pathogen Phytophthora infestans reveals abundant phosphorylation of members of the CRN effector family. , 2014, Journal of proteome research.

[13]  Gabriel L. Lozano,et al.  De novo pyrimidine biosynthesis in the oomycete plant pathogen Phytophthora infestans. , 2014, Gene.

[14]  Z. Ronai,et al.  Roquin-2 Promotes Ubiquitin-Mediated Degradation of ASK1 to Regulate Stress Responses , 2014, Science Signaling.

[15]  P. Karlovsky,et al.  Identification of ABC Transporter Genes of Fusarium graminearum with Roles in Azole Tolerance and/or Virulence , 2013, PloS one.

[16]  Yu Saito,et al.  Phenazine antibiotic production and antifungal activity are regulated by multiple quorum-sensing systems in Pseudomonas chlororaphis subsp. aurantiaca StFRB508. , 2013, Journal of bioscience and bioengineering.

[17]  Nicolas Servant,et al.  A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis , 2013, Briefings Bioinform..

[18]  C. Goyer,et al.  Phenazine production by Pseudomonas sp. LBUM223 contributes to the biological control of potato common scab. , 2013, Phytopathology.

[19]  Graham J. Etherington,et al.  From pathogen genomes to host plant processes: the power of plant parasitic oomycetes , 2013, Genome Biology.

[20]  A. Raio,et al.  Insights on the susceptibility of plant pathogenic fungi to phenazine-1-carboxylic acid and its chemical derivatives , 2013, Natural product research.

[21]  P. Hedley,et al.  Identification and Characterisation CRN Effectors in Phytophthora capsici Shows Modularity and Functional Diversity , 2013, PloS one.

[22]  Tao Jiang,et al.  Novel core promoter elements in the oomycete pathogen Phytophthora infestans and their influence on expression detected by genome-wide analysis , 2013, BMC Genomics.

[23]  G. Forbes Using Host Resistance to Manage Potato Late Blight with Particular Reference to Developing Countries , 2012, Potato Research.

[24]  Young Cheol Kim,et al.  Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions , 2012, PLoS genetics.

[25]  Mohammad Pessarakli,et al.  Reactive Oxygen Species, Oxidative Damage, and Antioxidative Defense Mechanism in Plants under Stressful Conditions , 2012 .

[26]  T. Paulitz,et al.  Accumulation of the Antibiotic Phenazine-1-Carboxylic Acid in the Rhizosphere of Dryland Cereals , 2011, Applied and Environmental Microbiology.

[27]  G. Van den Ackerveken,et al.  How do oomycete effectors interfere with plant life? , 2011, Current opinion in plant biology.

[28]  C. Jacob,et al.  Redox active secondary metabolites. , 2011, Current opinion in chemical biology.

[29]  Audrey M. V. Ah-Fong,et al.  The kinome of Phytophthora infestans reveals oomycete-specific innovations and links to other taxonomic groups , 2010, BMC Genomics.

[30]  S. Raffaele,et al.  Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans , 2010, BMC Genomics.

[31]  Davis J. McCarthy,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[32]  B. Haas,et al.  Ten things to know about oomycete effectors. , 2009, Molecular plant pathology.

[33]  H. Judelson,et al.  Metabolic adaptation of Phytophthora infestans during growth on leaves, tubers and artificial media. , 2009, Molecular plant pathology.

[34]  Jonathan D. G. Jones,et al.  Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans , 2009, Nature.

[35]  Brad T. Sherman,et al.  Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists , 2008, Nucleic acids research.

[36]  B. Williams,et al.  Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.

[37]  W. Fry,et al.  Phytophthora infestans: the plant (and R gene) destroyer. , 2008, Molecular plant pathology.

[38]  M. Robles,et al.  University of Birmingham High throughput functional annotation and data mining with the Blast2GO suite , 2022 .

[39]  S. Kamoun Groovy times: filamentous pathogen effectors revealed. , 2007, Current opinion in plant biology.

[40]  Jonathan D. G. Jones,et al.  The plant immune system , 2006, Nature.

[41]  W. Blankenfeldt,et al.  Phenazine compounds in fluorescent Pseudomonas spp. biosynthesis and regulation. , 2006, Annual review of phytopathology.

[42]  S. Kamoun A catalogue of the effector secretome of plant pathogenic oomycetes. , 2006, Annual review of phytopathology.

[43]  F. Küpper,et al.  Early events in the perception of lipopolysaccharides in the brown alga Laminaria digitata include an oxidative burst and activation of fatty acid oxidation cascades. , 2006, Journal of experimental botany.

[44]  Kunihiro Matsumoto,et al.  ROS-dependent activation of the TRAF6-ASK1-p38 pathway is selectively required for TLR4-mediated innate immunity , 2005, Nature Immunology.

[45]  L. Adam,et al.  Comparative screening of bacteria for biological control of potato late blight (strain US-8), using invitro, detached-leaves, and whole-plant testing systems , 2003 .

[46]  Brad T. Sherman,et al.  DAVID: Database for Annotation, Visualization, and Integrated Discovery , 2003, Genome Biology.

[47]  A I Saeed,et al.  TM4: a free, open-source system for microarray data management and analysis. , 2003, BioTechniques.

[48]  P Nordlund,et al.  A revised model of the active site of alternative oxidase , 1999, FEBS letters.

[49]  L. Thomashow,et al.  Role of a phenazine antibiotic from Pseudomonas fluorescens in biological control of Gaeumannomyces graminis var. tritici , 1988, Journal of bacteriology.

[50]  R. Cook,et al.  Characterization of an antibiotic produced by a strain of Pseudomonas fluorescens inhibitory to Gaeumannomyces graminis var. tritici and Pythium spp , 1986, Antimicrobial Agents and Chemotherapy.

[51]  S. Philip,et al.  Phenazine-1-carboxylic acid mediated anti-oomycete activity of the endophytic Alcaligenes sp. EIL-2 against Phytophthora meadii. , 2015, Microbiological research.

[52]  Xiaoyu Liang,et al.  Effects of phenazine-1-carboxylic acid on the biology of the plant-pathogenic bacterium Xanthomonas oryzae pv. oryzae. , 2015, Pesticide biochemistry and physiology.

[53]  V. Gadkar,et al.  The ability of Pseudomonas sp. LBUM 223 to produce phenazine-1-carboxylic acid affects the growth of Streptomyces scabies, the expression of thaxtomin biosynthesis genes and the biological control potential against common scab of potato. , 2011, FEMS microbiology ecology.

[54]  Brad T. Sherman,et al.  Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.

[55]  R. Fluhr,et al.  Nutrition acquisition strategies during fungal infection of plants. , 2007, FEMS microbiology letters.

[56]  W. Liang,et al.  TM4 microarray software suite. , 2006, Methods in enzymology.

[57]  W. Liang,et al.  9) TM4 Microarray Software Suite , 2006 .