A Novel Sparse Overlapping Modularized Gaussian Graphical Model for Functional Connectivity Estimation

Neural mechanisms underlying brain functional systems remain poorly understood, the problem of estimating statistically robust and biologically meaningful functional connectivity by limited functional magnetic resonance imaging (fMRI) time series containing complex noises remains an open field. Addressing this issue, motivated by recent studies, which have highlighted that brain existing functional overlapping modularized patterns, we propose a novel sparse overlapping modularized Gaussian graphical model (SOMGGM) that estimates functional connectivity by modularizing the connection patterns and allowing each brain region belonging to multiple modules. Extensive experimental results demonstrate that the proposed SOMGGM not only has more power to accurately estimate functional connectivity network structure, but also improves feature extraction and enhances the performance in the brain neurological disease diagnosis task. Additionally, SOMGGM can help to find the brain regions assigned to multiple network modules which are likely important hub nodes. In general, the proposed SOMGGM offers a new computational methodology for brain functional connectivity estimation.

[1]  Mark W. Woolrich,et al.  Network modelling methods for FMRI , 2011, NeuroImage.

[2]  V. Menon Large-scale brain networks and psychopathology: a unifying triple network model , 2011, Trends in Cognitive Sciences.

[3]  Vinod Menon,et al.  Functional connectivity in the resting brain: A network analysis of the default mode hypothesis , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[4]  Martin A. Lindquist,et al.  Assessing uncertainty in dynamic functional connectivity , 2017, NeuroImage.

[5]  Jean-Baptiste Poline,et al.  Brain covariance selection: better individual functional connectivity models using population prior , 2010, NIPS.

[6]  Xiang Li,et al.  Spatio-temporal modeling of connectome-scale brain network interactions via time-evolving graphs , 2017, NeuroImage.

[7]  Kaustubh Supekar,et al.  Estimation of functional connectivity in fMRI data using stability selection-based sparse partial correlation with elastic net penalty , 2012, NeuroImage.

[8]  Jean-Baptiste Poline,et al.  A Novel Sparse Group Gaussian Graphical Model for Functional Connectivity Estimation , 2013, IPMI.

[9]  Su-In Lee,et al.  Learning Sparse Gaussian Graphical Models with Overlapping Blocks , 2016, NIPS.

[10]  Monique Ernst,et al.  Intrinsic functional connectivity of the central nucleus of the amygdala and bed nucleus of the stria terminalis , 2017, NeuroImage.

[11]  Dinggang Shen,et al.  Enhancing the representation of functional connectivity networks by fusing multi‐view information for autism spectrum disorder diagnosis , 2018, Human brain mapping.

[12]  R. Tibshirani,et al.  Sparse inverse covariance estimation with the graphical lasso. , 2008, Biostatistics.

[13]  H. Möller,et al.  Functional connectivity of emotional processing in depression. , 2011, Journal of affective disorders.

[14]  Pradeep Ravikumar,et al.  Sparse inverse covariance matrix estimation using quadratic approximation , 2011, MLSLP.

[15]  Patrick L. Combettes,et al.  Proximal Splitting Methods in Signal Processing , 2009, Fixed-Point Algorithms for Inverse Problems in Science and Engineering.

[16]  Dinggang Shen,et al.  Estimating functional brain networks by incorporating a modularity prior , 2016, NeuroImage.

[17]  Jeffrey L. Birk,et al.  Reduced caudate and nucleus accumbens response to rewards in unmedicated individuals with major depressive disorder. , 2009, The American journal of psychiatry.

[18]  Jing Li,et al.  Learning brain connectivity of Alzheimer's disease by sparse inverse covariance estimation , 2010, NeuroImage.

[19]  Dustin Scheinost,et al.  Using connectome-based predictive modeling to predict individual behavior from brain connectivity , 2017, Nature Protocols.