MixSIH: a mixture model for single individual haplotyping
暂无分享,去创建一个
[1] D. Schaid. Evaluating associations of haplotypes with traits , 2004, Genetic epidemiology.
[2] Nianjun Liu,et al. Genotype calling from next-generation sequencing data using haplotype information of reads , 2012, Bioinform..
[3] Katja Nowick,et al. A comprehensively molecular haplotype-resolved genome of a European individual. , 2011, Genome research.
[4] Peter Donnelly,et al. A comparison of bayesian methods for haplotype reconstruction from population genotype data. , 2003, American journal of human genetics.
[5] Jay Shendure,et al. Noninvasive Whole-Genome Sequencing of a Human Fetus , 2012, Science Translational Medicine.
[6] S. Gabriel,et al. The Structure of Haplotype Blocks in the Human Genome , 2002, Science.
[7] Timothy B. Stockwell,et al. The Diploid Genome Sequence of an Individual Human , 2007, PLoS biology.
[8] Hagai Attias,et al. Inferring Parameters and Structure of Latent Variable Models by Variational Bayes , 1999, UAI.
[9] G. Coop,et al. High-Resolution Mapping of Crossovers Reveals Extensive Variation in Fine-Scale Recombination Patterns Among Humans , 2008, Science.
[10] Michael S Waterman,et al. Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi. , 2007, Genome research.
[11] Life Technologies,et al. A map of human genome variation from population-scale sequencing , 2011 .
[12] L. Excoffier,et al. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. , 1995, Molecular biology and evolution.
[13] Filippo Geraci,et al. A comparison of several algorithms for the single individual SNP haplotyping reconstruction problem , 2010, Bioinform..
[14] Bin Fu,et al. Linear Time Probabilistic Algorithms for the Singular Haplotype Reconstruction Problem from SNP Fragments , 2007, APBC.
[15] M. Waterman,et al. A dynamic programming algorithm for haplotype block partitioning , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[16] S. Turner,et al. Real-time DNA sequencing from single polymerase molecules. , 2010, Methods in enzymology.
[17] Eleazar Eskin,et al. Optimal algorithms for haplotype assembly from whole-genome sequence data , 2010, Bioinform..
[18] B. Browning,et al. Haplotype phasing: existing methods and new developments , 2011, Nature Reviews Genetics.
[19] A. Halpern,et al. An MCMC algorithm for haplotype assembly from whole-genome sequence data. , 2008, Genome research.
[20] Richard M. Karp,et al. Reducibility Among Combinatorial Problems , 1972, 50 Years of Integer Programming.
[21] D. Altshuler,et al. A map of human genome variation from population-scale sequencing , 2010, Nature.
[22] G. Abecasis,et al. MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes , 2010, Genetic epidemiology.
[23] Ali Bashir,et al. Strobe sequence design for haplotype assembly , 2011, BMC Bioinformatics.
[24] V. Bansal,et al. The importance of phase information for human genomics , 2011, Nature Reviews Genetics.
[25] Jong Hyun Kim,et al. Haplotype reconstruction from SNP alignment , 2003, RECOMB '03.
[26] K. Verstrepen,et al. Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques , 2011, Nucleic acids research.
[27] Vineet Bafna,et al. HapCUT: an efficient and accurate algorithm for the haplotype assembly problem , 2008, ECCB.
[28] Raymond E. Miller,et al. Complexity of Computer Computations , 1972 .
[29] Andrew C. Adey,et al. Haplotype-resolved genome sequencing of a Gujarati Indian individual , 2011, Nature Biotechnology.
[30] Thomas LaFramboise,et al. Calling amplified haplotypes in next generation tumor sequence data. , 2012, Genome research.
[31] A. Clark,et al. Inference of haplotypes from PCR-amplified samples of diploid populations. , 1990, Molecular biology and evolution.
[32] P. Donnelly,et al. A new statistical method for haplotype reconstruction from population data. , 2001, American journal of human genetics.
[33] Alessandro Panconesi,et al. Fast Hare: A Fast Heuristic for Single Individual SNP Haplotype Reconstruction , 2004, WABI.
[34] Zhaohui S. Qin,et al. A second generation human haplotype map of over 3.1 million SNPs , 2007, Nature.
[35] J. Novembre,et al. Finding haplotype block boundaries by using the minimum-description-length principle. , 2003, American journal of human genetics.