A mathematical model of mechanotransduction reveals how mechanical memory regulates mesenchymal stem cell fate decisions
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Tao Peng | Qing Nie | Weian Zhao | Linan Liu | Adam L MacLean | Chi Wut Wong | Adam L. Maclean | Weian Zhao | Q. Nie | Tao Peng | Linan Liu | C. W. Wong | Weian Zhao
[1] Milan Mrksich,et al. Geometric cues for directing the differentiation of mesenchymal stem cells , 2010, Proceedings of the National Academy of Sciences.
[2] S. Thrun,et al. Substrate Elasticity Regulates Skeletal Muscle Stem Cell Self-Renewal in Culture , 2010, Science.
[3] D. A. Baxter,et al. Modeling transcriptional control in gene networks—methods, recent results, and future directions , 2000, Bulletin of mathematical biology.
[4] E. Allen. Modeling with Itô Stochastic Differential Equations , 2007 .
[5] Y. Kuznetsov,et al. New features of the software MatCont for bifurcation analysis of dynamical systems , 2008 .
[6] Christopher S. Chen,et al. Cell shape, cytoskeletal tension, and RhoA regulate stem cell lineage commitment. , 2004, Developmental cell.
[7] Heino Prinz,et al. Hill coefficients, dose–response curves and allosteric mechanisms , 2010, Journal of chemical biology.
[8] Sirio Dupont. Role of YAP/TAZ in mechanotransduction , 2011 .
[9] Xiaobo Zhou,et al. Modeling Cell–Cell Interactions in Regulating Multiple Myeloma Initiating Cell Fate , 2014, IEEE Journal of Biomedical and Health Informatics.
[10] Michael B Yaffe,et al. TAZ as a novel enhancer of MyoD‐mediated myogenic differentiation , 2010, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[11] Erkang Wang,et al. Landscape topography determines global stability and robustness of a metabolic network. , 2012, ACS synthetic biology.
[12] P. Janmey,et al. Transcription factor regulation by mechanical stress. , 2012, The international journal of biochemistry & cell biology.
[13] I. A. Rogov,et al. in vitro MYOGENIC DIFFERENTIATION OF BOVINE MULTIPOTENT MESENCHYMAL STEM CELLS TAKEN FROM BONE MARROW AND ADIPOSE TISSUE , 2012 .
[14] W. Ebeling. Stochastic Processes in Physics and Chemistry , 1995 .
[15] Wesley R. Legant,et al. Degradation-mediated cellular traction directs stem cell fate in covalently crosslinked three-dimensional hydrogels , 2013, Nature materials.
[16] F. Guilak,et al. Control of stem cell fate by physical interactions with the extracellular matrix. , 2009, Cell stem cell.
[17] Jin-Su Kim,et al. Stiffness of Hydrogels Regulates Cellular Reprogramming Efficiency Through Mesenchymal-to-Epithelial Transition and Stemness Markers. , 2016, Macromolecular bioscience.
[18] Jin Wang,et al. Quantifying the Waddington landscape and biological paths for development and differentiation , 2011, Proceedings of the National Academy of Sciences.
[19] Christopher J Murphy,et al. Role of substratum stiffness in modulating genes associated with extracellular matrix and mechanotransducers YAP and TAZ. , 2013, Investigative ophthalmology & visual science.
[20] Jianping Fu,et al. Forcing stem cells to behave: a biophysical perspective of the cellular microenvironment. , 2012, Annual review of biophysics.
[21] Qing Nie,et al. Interactions and tradeoffs between cell recruitment, proliferation, and differentiation affect CNS regeneration. , 2014, Biophysical journal.
[22] Jin Wang,et al. Quantifying Cell Fate Decisions for Differentiation and Reprogramming of a Human Stem Cell Network: Landscape and Biological Paths , 2013, PLoS Comput. Biol..
[23] Erkang Wang,et al. Potential and flux landscapes quantify the stability and robustness of budding yeast cell cycle network , 2010, Proceedings of the National Academy of Sciences.
[24] Michael B. Yaffe,et al. TAZ: A β-Catenin-like Molecule that Regulates Mesenchymal Stem Cell Differentiation , 2006 .
[25] Mikala Egeblad,et al. Matrix Crosslinking Forces Tumor Progression by Enhancing Integrin Signaling , 2009, Cell.
[26] Sho Fujisawa,et al. Nuclear CDKs Drive Smad Transcriptional Activation and Turnover in BMP and TGF-β Pathways , 2009, Cell.
[27] Meiyu Sun,et al. Mechanism of regulation of stem cell differentiation by matrix stiffness , 2015, Stem Cell Research & Therapy.
[28] Sangkyun Cho,et al. Fractal heterogeneity in minimal matrix models of scars modulates stiff-niche stem-cell responses via the nuclear exit of a mechanorepressor , 2015, Nature materials.
[29] Peter G Wolynes,et al. Stochastic gene expression as a many-body problem , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[30] Stefano Piccolo,et al. Transduction of mechanical and cytoskeletal cues by YAP and TAZ , 2012, Nature Reviews Molecular Cell Biology.
[31] Dennis E. Discher,et al. Nuclear Lamin-A Scales with Tissue Stiffness and Enhances Matrix-Directed Differentiation , 2013, Science.
[32] Jeffrey W. Smith,et al. Stochastic Gene Expression in a Single Cell , .
[33] Cynthia A. Reinhart-King,et al. Tensional homeostasis and the malignant phenotype. , 2005, Cancer cell.
[34] Thomas Benjamin,et al. TAZ, a Transcriptional Modulator of Mesenchymal Stem Cell Differentiation , 2005, Science.
[35] L. Aravind,et al. Interplay between gene expression noise and regulatory network architecture. , 2012, Trends in genetics : TIG.
[36] E. Aurell,et al. Dynamics inside the cancer cell attractor reveal cell heterogeneity, limits of stability, and escape , 2016, Proceedings of the National Academy of Sciences.
[37] S. Sen,et al. Matrix Elasticity Directs Stem Cell Lineage Specification , 2006, Cell.
[38] D. G. T. Strange,et al. Extracellular-matrix tethering regulates stem-cell fate. , 2012, Nature materials.
[39] Florian Rehfeldt,et al. Hyaluronic acid matrices show matrix stiffness in 2D and 3D dictates cytoskeletal order and myosin-II phosphorylation within stem cells. , 2012, Integrative biology : quantitative biosciences from nano to macro.
[40] Darren Paul Burke,et al. Substrate Stiffness and Oxygen as Regulators of Stem Cell Differentiation during Skeletal Tissue Regeneration: A Mechanobiological Model , 2012, PloS one.
[41] Seyed Jamaleddin Mousavi,et al. Role of Mechanical Cues in Cell Differentiation and Proliferation: A 3D Numerical Model , 2015, PloS one.
[42] N. Kampen,et al. Stochastic processes in physics and chemistry , 1981 .
[43] Uri Alon,et al. Logarithmic and Power Law Input-Output Relations in Sensory Systems with Fold-Change Detection , 2014, PLoS Comput. Biol..
[44] Brian Ingalls,et al. Mathematical Modeling in Systems Biology: An Introduction , 2013 .
[45] Gideon A. Rodan,et al. Control of osteoblast function and regulation of bone mass , 2003, Nature.
[46] Judit Zsuga,et al. The Hill equation and the origin of quantitative pharmacology , 2012 .
[47] M Browne,et al. A prediction of cell differentiation and proliferation within a collagen-glycosaminoglycan scaffold subjected to mechanical strain and perfusive fluid flow. , 2010, Journal of biomechanics.
[48] Michael B Yaffe,et al. TAZ: a beta-catenin-like molecule that regulates mesenchymal stem cell differentiation. , 2006, Cell cycle.
[49] Hung-Chih Kuo,et al. Loss of non-coding RNA expression from the DLK1-DIO3 imprinted locus correlates with reduced neural differentiation potential in human embryonic stem cell lines , 2015, Stem Cell Research & Therapy.
[50] Jin Wang,et al. Potential landscape and flux framework of nonequilibrium networks: Robustness, dissipation, and coherence of biochemical oscillations , 2008, Proceedings of the National Academy of Sciences.
[51] Jae-Won Shin,et al. Stem cell mechanobiology: diverse lessons from bone marrow. , 2015, Trends in cell biology.
[52] Chunhe Li,et al. Landscape and flux reveal a new global view and physical quantification of mammalian cell cycle , 2014, Proceedings of the National Academy of Sciences.
[53] W. Baker. A review of models of landscape change , 1989, Landscape Ecology.
[54] Eugene L. Allgower,et al. Numerical continuation methods - an introduction , 1990, Springer series in computational mathematics.
[55] Hiroyuki Honda,et al. Morphology-Based Prediction of Osteogenic Differentiation Potential of Human Mesenchymal Stem Cells , 2013, PloS one.
[56] Lonnie D Shea,et al. Dynamic transcription factor activity networks in response to independently altered mechanical and adhesive microenvironmental cues. , 2016, Integrative biology : quantitative biosciences from nano to macro.
[57] Dongyuan Lü,et al. Differential regulation of morphology and stemness of mouse embryonic stem cells by substrate stiffness and topography. , 2014, Biomaterials.
[58] Giuseppe Basso,et al. YAP/TAZ Incorporation in the β-Catenin Destruction Complex Orchestrates the Wnt Response , 2014, Cell.
[59] Todd C. McDevitt,et al. Materials as stem cell regulators. , 2014, Nature materials.
[60] Meng Chen,et al. Noise Attenuation in the ON and OFF States of Biological Switches , 2013, ACS synthetic biology.
[61] Joachim P. Spatz,et al. Erratum: Extracellular-matrix tethering regulates stem-cell fate (Nature Materials (2012) 11 (642-649)) , 2012 .
[62] Zhiyong He,et al. Rho/Rock signal transduction pathway is required for MSC tenogenic differentiation , 2015, Bone Research.
[63] Thomas R. Cox,et al. Remodeling and homeostasis of the extracellular matrix: implications for fibrotic diseases and cancer , 2011, Disease Models & Mechanisms.
[64] Eric H Davidson,et al. Modeling the dynamics of transcriptional gene regulatory networks for animal development. , 2009, Developmental biology.
[65] Yu Suk Choi,et al. Interplay of Matrix Stiffness and Protein Tethering in Stem Cell Differentiation , 2014, Nature materials.
[66] Meng Sun,et al. A Computational Model of YAP/TAZ Mechanosensing. , 2016, Biophysical journal.
[67] Jeremy J Mao,et al. Cytoskeletal Changes of Mesenchymal Stem Cells During Differentiation , 2007, ASAIO journal.
[68] P. Bonaldo,et al. Extracellular matrix: A dynamic microenvironment for stem cell niche , 2014, Biochimica et biophysica acta.
[69] Kristi S. Anseth,et al. Mechanical memory and dosing influence stem cell fate , 2014, Nature materials.