Functional Genomics of Gastrointestinal Escherichia coli Isolated from Patients with Cancer and Diarrhea
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R. Gibbs | D. Muzny | J. Petrosino | G. Metcalf | H. Doddapaneni | X. Qin | M. Holder | R. Jenq | M. C. Ross | M. Estes | A. Maresso | K. Hoffman | S. Blutt | S. J. Javornik Cregeen | P. Okhuysen | Q. Meng | Anubama Rajan | Hannah E Carter | V. Menon | L. Carlin | Xi-Lei Zeng | Xiaomin Yu | A. Olvera | J. Clark | Ellen Vaughan | Amal Kambal | D. Muzny
[1] A. Maresso,et al. Comparative Pathogenomics of Escherichia coli: Polyvalent Vaccine Target Identification through Virulome Analysis , 2021, Infection and immunity.
[2] J. Huebner,et al. Zinc as a complementary treatment for cancer patients: a systematic review , 2021, Clinical and Experimental Medicine.
[3] R. Jenq,et al. Enteropathogenic Escherichia coli Infection in Cancer and Immunosuppressed Patients. , 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[4] I. Yakoub-Agha,et al. Impact and consequences of intensive chemotherapy on intestinal barrier and microbiota in acute myeloid leukemia: the role of mucosal strengthening , 2020, Gut microbes.
[5] D. Rasko,et al. Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains , 2020, PLoS neglected tropical diseases.
[6] J. Petrosino,et al. Enteroaggregative E. coli Adherence to Human Heparan Sulfate Proteoglycans Drives Segment and Host Specific Responses to Infection , 2020, PLoS pathogens.
[7] Allegra T. Aron,et al. Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut , 2020, Nature Communications.
[8] Leighton Pritchard,et al. Easy phylotyping of Escherichia coli via the EzClermont web app and command-line tool , 2020, Access microbiology.
[9] Lisa C. Crossman,et al. Identification and characterisation of enteroaggregative Escherichia coli subtypes associated with human disease , 2020, Scientific Reports.
[10] Q. Bassat,et al. Escherichia coli ST131 clones harbouring AggR and AAF/V fimbriae causing bacteremia in Mozambican children: Emergence of new variant of fimH27 subclone , 2020, PLoS neglected tropical diseases.
[11] W. Elias,et al. Analysis of the Virulence Profile and Phenotypic Features of Typical and Atypical Enteroaggregative Escherichia coli (EAEC) Isolated From Diarrheal Patients in Brazil , 2020, Frontiers in Cellular and Infection Microbiology.
[12] Sergey Koren,et al. HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads , 2020, bioRxiv.
[13] J. Wells,et al. Illnesses Associated with Escherichia coli 0157:H7 Infections , 2020 .
[14] Geoffrey L. Winsor,et al. CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database , 2019, Nucleic Acids Res..
[15] Mohammad Alanjary,et al. AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential , 2019, Nucleic Acids Res..
[16] C. Lang,et al. Novel type of pilus associated with a Shiga-toxigenic E. coli hybrid pathovar conveys aggregative adherence and bacterial virulence , 2018, Emerging Microbes & Infections.
[17] L. Price,et al. Emergence of Enteroaggregative Escherichia coli within the ST131 Lineage as a Cause of Extraintestinal Infections , 2018, mBio.
[18] Keith A Jolley,et al. Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications , 2018, Wellcome open research.
[19] Sergey Koren,et al. De novo assembly of haplotype-resolved genomes with trio binning , 2018, Nature Biotechnology.
[20] A. Maresso,et al. Human Intestinal Enteroids for the Study of Bacterial Adherence, Invasion, and Translocation , 2018, Current protocols in microbiology.
[21] E. Denamur,et al. ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping , 2018, Microbial genomics.
[22] M. Estes,et al. Novel Segment- and Host-Specific Patterns of Enteroaggregative Escherichia coli Adherence to Human Intestinal Enteroids , 2018, mBio.
[23] E. Mohammadi,et al. Barriers and facilitators related to the implementation of a physiological track and trigger system: A systematic review of the qualitative evidence , 2017, International journal for quality in health care : journal of the International Society for Quality in Health Care.
[24] H. Dupont,et al. Clinical features and molecular epidemiology of diarrheagenic Escherichia coli pathotypes identified by fecal gastrointestinal multiplex nucleic acid amplification in patients with cancer and diarrhea. , 2017, Diagnostic microbiology and infectious disease.
[25] O. Lund,et al. Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles , 2017, Journal of Clinical Microbiology.
[26] K. Markey,et al. Low rates of antibiotic resistance and infectious mortality in a cohort of high-risk hematology patients: A single center, retrospective analysis of blood stream infection , 2017, PloS one.
[27] S. Koren,et al. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation , 2016, bioRxiv.
[28] Jihyun F. Kim,et al. Genome sequence of Escherichia coli NCCP15653, a group D strain isolated from a diarrhea patient , 2016, Gut Pathogens.
[29] M. Halushka,et al. Enterohemorrhagic Escherichia coli Reduces Mucus and Intermicrovillar Bridges in Human Stem Cell-Derived Colonoids , 2015, Cellular and molecular gastroenterology and hepatology.
[30] N. Ajami,et al. Murine Model of Chemotherapy-Induced Extraintestinal Pathogenic Escherichia coli Translocation , 2015, Infection and Immunity.
[31] Frank M. Aarestrup,et al. Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data , 2015, Journal of Clinical Microbiology.
[32] N. Osheroff,et al. Role of the Water–Metal Ion Bridge in Mediating Interactions between Quinolones and Escherichia coli Topoisomerase IV , 2014, Biochemistry.
[33] T. Zembower. Epidemiology of Infections in Cancer Patients , 2014, Cancer treatment and research.
[34] L. Beutin,et al. Characteristics of enteroaggregative Escherichia coli isolated from healthy carriers and from patients with diarrhoea. , 2013, Journal of medical microbiology.
[35] G. Armstrong,et al. Uropathogenic Escherichia coli colicin-like usp and associated proteins: their evolution and role in pathogenesis. , 2013, The Journal of infectious diseases.
[36] R. Guerrant,et al. The micronutrient zinc inhibits EAEC strain 042 adherence, biofilm formation, virulence gene expression, and epithelial cytokine responses benefiting the infected host , 2013, Virulence.
[37] T. Estrada-Garcia,et al. Enteroaggregative Escherichia coli pathotype: a genetically heterogeneous emerging foodborne enteropathogen. , 2012, FEMS immunology and medical microbiology.
[38] Glenn Tesler,et al. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory , 2012, BMC Bioinformatics.
[39] Weiping Zhang,et al. Escherichia coli Expressing EAST1 Toxin Did Not Cause an Increase of cAMP or cGMP Levels in Cells, and No Diarrhea in 5-Day Old Gnotobiotic Pigs , 2012, PloS one.
[40] Ole Lund,et al. Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria , 2012, Journal of Clinical Microbiology.
[41] H. Dupont,et al. Single nucleotide polymorphisms in the promoter of the gene encoding the lipopolysaccharide receptor CD14 are associated with bacterial diarrhea in US and Canadian travelers to Mexico. , 2011, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[42] C. G. Diniz,et al. Occurrence and antimicrobial drug susceptibility patterns of commensal and diarrheagenic Escherichia coli in fecal microbiota from children with and without acute diarrhea , 2011, The Journal of Microbiology.
[43] B. Molitoris,et al. Uropathogenic Escherichia coli P and Type 1 Fimbriae Act in Synergy in a Living Host to Facilitate Renal Colonization Leading to Nephron Obstruction , 2011, PLoS pathogens.
[44] N. Socci,et al. Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans. , 2010, The Journal of clinical investigation.
[45] H. Dupont,et al. Enteroaggregative Escherichia coli (EAEC): a cause of acute and persistent diarrhea of worldwide importance. , 2010, Journal of Infectious Diseases.
[46] P. Kaur,et al. Enteroaggregative Escherichia coli: An Emerging Enteric Food Borne Pathogen , 2010, Interdisciplinary perspectives on infectious diseases.
[47] André Gomes,et al. Diarrhea-associated biofilm formed by enteroaggregative Escherichia coli and aggregative Citrobacter freundii: a consortium mediated by putative F pili , 2010, BMC Microbiology.
[48] A. Mattos-Guaraldi,et al. Iron‐limited condition modulates biofilm formation and interaction with human epithelial cells of enteroaggregative Escherichia coli (EAEC) , 2010, Journal of applied microbiology.
[49] Ning Ma,et al. BLAST+: architecture and applications , 2009, BMC Bioinformatics.
[50] H. Dupont,et al. Virulence characteristics and the molecular epidemiology of enteroaggregative Escherichia coli isolates from travellers to developing countries. , 2007, Journal of medical microbiology.
[51] H. Mobley,et al. Role of P-fimbrial-mediated adherence in pyelonephritis and persistence of uropathogenic Escherichia coli (UPEC) in the mammalian kidney. , 2007, Kidney international.
[52] H. Dupont,et al. A novel single-nucleotide polymorphism in the lactoferrin gene is associated with susceptibility to diarrhea in North American travelers to Mexico. , 2007, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[53] Daniel Falush,et al. Sex and virulence in Escherichia coli: an evolutionary perspective , 2006, Molecular microbiology.
[54] J. Nataro,et al. An IncI1 Plasmid Contributes to the Adherence of the Atypical Enteroaggregative Escherichia coli Strain C1096 to Cultured Cells and Abiotic Surfaces , 2006, Infection and Immunity.
[55] U. Fagundes-neto,et al. Evaluation of Multiplex PCRs for Diagnosis of Infection with Diarrheagenic Escherichia coli and Shigella spp , 2004, Journal of Clinical Microbiology.
[56] S. H. Fabbricotti,et al. Enteroaggregative Escherichia coli Virulence Factors Are Found To Be Associated with Infantile Diarrhea in Brazil , 2004, Journal of Clinical Microbiology.
[57] V. Zahner,et al. Genotypic and phenotypic characterization of enterotoxigenic Escherichia coli (ETEC) strains isolated in Rio de Janeiro city, Brazil. , 2004, FEMS immunology and medical microbiology.
[58] Harry L. T. Mobley,et al. Pathogenic Escherichia coli , 2004, Nature Reviews Microbiology.
[59] D. Briggs,et al. An Evolutionary Perspective , 2004, J. Decis. Syst..
[60] I. Okeke,et al. Molecular Epidemiology of the Iron Utilization Genes of Enteroaggregative Escherichia coli , 2004, Journal of Clinical Microbiology.
[61] D. Milewicz,et al. Genetic susceptibility to enteroaggregative Escherichia coli diarrhea: polymorphism in the interleukin-8 promotor region. , 2003, The Journal of infectious diseases.
[62] Xilin Zhao,et al. Gatifloxacin Activity against Quinolone-Resistant Gyrase: Allele-Specific Enhancement of Bacteriostatic and Bactericidal Activities by the C-8-Methoxy Group , 1999, Antimicrobial Agents and Chemotherapy.
[63] B. Miljković-Selimović,et al. Enteroaggregative Escherichia coli associated with an outbreak of diarrhoea in a neonatal nursery ward , 1996, Epidemiology and Infection.
[64] M. Levine,et al. Heterogeneity of enteroaggregative Escherichia coli virulence demonstrated in volunteers. , 1995, The Journal of infectious diseases.
[65] M. Levine,et al. Enteroaggregative Escherichia coli elaborate a heat-stable enterotoxin demonstrable in an in vitro rabbit intestinal model. , 1991, The Journal of clinical investigation.
[66] A. Nosari,et al. Infections in haematologic neoplasms: autopsy findings. , 1991, Haematologica.
[67] A. Maxwell,et al. Novel quinolone resistance mutations of the Escherichia coli DNA gyrase A protein: enzymatic analysis of the mutant proteins , 1991, Antimicrobial Agents and Chemotherapy.
[68] J. Wells,et al. Illnesses associated with Escherichia coli O157:H7 infections. A broad clinical spectrum. , 1988, Annals of internal medicine.
[69] M. Levine,et al. Patterns of adherence of diarrheagenic Escherichia coli to HEp-2 cells. , 1987, The Pediatric infectious disease journal.
[70] M. Levine,et al. Detection of an adherence factor of enteropathogenic Escherichia coli with a DNA probe. , 1985, The Journal of infectious diseases.
[71] Daniel S Waterman,et al. ESCHERICHIA COLI STRAINS THAT CAUSE DIARRHŒA BUT DO NOT PRODUCE HEAT-LABILE OR HEAT-STABLE ENTEROTOXINS AND ARE NON-INVASIVE , 1978, The Lancet.
[72] E. Freireich,et al. CAUSES OF DEATH IN ADULTS WITH ACUTE LEUKEMIA , 1976, Medicine.
[73] S. Falkow,et al. Plasmid-Associated Enterotoxin Production in a Strain of Escherichia coli Isolated from Humans , 1972, Infection and immunity.
[74] S. Formal,et al. EXPERIMENTAL SHIGELLA INFECTIONS: CHARACTERISTICS OF A FATAL INFECTION PRODUCED IN GUINEA PIGS , 1958, Journal of bacteriology.
[75] Gerhard Nahler. Observational Study , 2018 .
[76] M. Estes,et al. Human Intestinal Enteroids: New Models to Study Gastrointestinal Virus Infections. , 2017, Methods in molecular biology.
[77] D. Walsh,et al. Infectious complications of advanced cancer , 2014, Supportive Care in Cancer.
[78] J. Nataro,et al. Pathogenesis of enteroaggregative Escherichia coli infection. , 2006, FEMS microbiology letters.
[79] I. Okeke,et al. Heterogeneous virulence of enteroaggregative Escherichia coli strains isolated from children in Southwest Nigeria. , 2000, The Journal of infectious diseases.
[80] R. Guerrant,et al. Enteroaggregative Escherichia coli produce intestinal inflammation and growth impairment and cause interleukin-8 release from intestinal epithelial cells. , 1998, The Journal of infectious diseases.
[81] van der Korst. [The Nederlandsch Tijdschrift voor Geneeskunde and the practice of medical science in The Netherlands (1857-1896); light under a bushel?]. , 1991, Nederlandsch tijdschrift voor geneeskunde.
[82] W. Schull,et al. THE AUTOPSY FINDINGS , 1956 .