Application of an antibody chip for screening differentially expressed proteins during peach ripening and identification of a metabolon in the SAM cycle to generate a peach ethylene biosynthesis model

[1]  H. Yaegaki,et al.  Insertion of a transposon-like sequence in the 5'-flanking region of the YUCCA gene causes the stony hard phenotype. , 2018, The Plant journal : for cell and molecular biology.

[2]  David T. W. Tzeng,et al.  Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening , 2018, Nature Plants.

[3]  A. Fernie,et al.  Protein-protein interactions and metabolite channelling in the plant tricarboxylic acid cycle , 2017, Nature Communications.

[4]  Hong Ma,et al.  A Strategy for Screening Monoclonal Antibodies for Arabidopsis Flowers , 2017, Front. Plant Sci..

[5]  L. Wong,et al.  Integrating Networks and Proteomics: Moving Forward. , 2016, Trends in biotechnology.

[6]  Jeffrey T Leek,et al.  Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown , 2016, Nature Protocols.

[7]  L. Trainotti,et al.  On the role of ethylene, auxin and a GOLVEN-like peptide hormone in the regulation of peach ripening , 2016, BMC Plant Biology.

[8]  L. An,et al.  Molecular cloning and characterization of an S-adenosylmethionine synthetase gene from Chorispora bungeana. , 2015, Gene.

[9]  M. Bouzayen,et al.  The Aux/IAA, Sl-IAA17 regulates quality parameters over tomato fruit development , 2015, Plant signaling & behavior.

[10]  Jinfang Chu,et al.  PpYUC11, a strong candidate gene for the stony hard phenotype in peach (Prunus persica L. Batsch), participates in IAA biosynthesis during fruit ripening , 2015, Journal of experimental botany.

[11]  Liang-bi Chen,et al.  FERONIA receptor kinase interacts with S-adenosylmethionine synthetase and suppresses S-adenosylmethionine production and ethylene biosynthesis in Arabidopsis. , 2015, Plant, cell & environment.

[12]  Yi Li,et al.  Morphinan biosynthesis in opium poppy requires a P450-oxidoreductase fusion protein , 2015, Science.

[13]  Wenfang Zeng,et al.  Characterization of 1-aminocyclopropane-1-carboxylic acid synthase (ACS) genes during nectarine fruit development and ripening , 2015, Tree Genetics & Genomes.

[14]  M. Hertog,et al.  A transcriptomics-based kinetic model for ethylene biosynthesis in tomato (Solanum lycopersicum) fruit: development, validation and exploration of novel regulatory mechanisms. , 2014, The New phytologist.

[15]  R. Hell,et al.  Methionine salvage and S-adenosylmethionine: essential links between sulfur, ethylene and polyamine biosynthesis. , 2013, The Biochemical journal.

[16]  R. McQuinn,et al.  Molecular and genetic regulation of fruit ripening , 2013, Plant Molecular Biology.

[17]  Christina E. Wells,et al.  The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution , 2013, Nature Genetics.

[18]  Ken-ichiro Hayashi,et al.  Increased levels of IAA are required for system 2 ethylene synthesis causing fruit softening in peach (Prunus persica L. Batsch) , 2013, Journal of experimental botany.

[19]  H. Yokoyama Growth and food source of the sea cucumber Apostichopus japonicus cultured below fish cages — Potential for integrated multi-trophic aquaculture , 2013 .

[20]  C. Bonghi,et al.  Grape berry ripening delay induced by a pre-véraison NAA treatment is paralleled by a shift in the expression pattern of auxin- and ethylene-related genes , 2012, BMC Plant Biology.

[21]  Xiangbin Xu,et al.  Cold-induced endogenous nitric oxide generation plays a role in chilling tolerance of loquat fruit during postharvest storage , 2012 .

[22]  J. Giovannoni,et al.  Genetics and control of tomato fruit ripening and quality attributes. , 2011, Annual review of genetics.

[23]  B. Karger,et al.  Discovery of Lung Cancer Biomarkers by Profiling the Plasma Proteome with Monoclonal Antibody Libraries , 2011, Molecular & Cellular Proteomics.

[24]  S. Morgutti,et al.  Peach fruit ripening: A proteomic comparative analysis of the mesocarp of two cultivars with different flesh firmness at two ripening stages. , 2011, Phytochemistry.

[25]  B. Karger,et al.  Antigen identification and characterization of lung cancer specific monoclonal antibodies produced by mAb proteomics. , 2010, Journal of proteome research.

[26]  S. Horvath,et al.  WGCNA: an R package for weighted correlation network analysis , 2008, BMC Bioinformatics.

[27]  C. Bonghi,et al.  Different postharvest conditions modulate ripening and ethylene biosynthetic and signal transduction pathways in Stony Hard peaches , 2008 .

[28]  Alisdair R Fernie,et al.  Glycolytic Enzymes Associate Dynamically with Mitochondria in Response to Respiratory Demand and Support Substrate Channeling[W] , 2007, The Plant Cell Online.

[29]  H. Fujii,et al.  Ethylene-regulation of fruit softening and softening-related genes in peach. , 2006, Journal of experimental botany.

[30]  R. Juang,et al.  Preparation of monoclonal antibody bank against whole water‐soluble proteins from rapid‐growing bamboo shoots , 2006, Proteomics.

[31]  H. Yaegaki,et al.  Inheritance and expression of fruit texture melting, non-melting and stony hard in peach , 2005 .

[32]  Kirsten Jørgensen,et al.  Metabolon formation and metabolic channeling in the biosynthesis of plant natural products. , 2005, Current opinion in plant biology.

[33]  C. López-Iglesias,et al.  Subcellular Localization of Arabidopsis 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase1 , 2005, Plant Physiology.

[34]  Klaus Harter,et al.  Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation. , 2004, The Plant journal : for cell and molecular biology.

[35]  S. Rhee,et al.  MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. , 2004, The Plant journal : for cell and molecular biology.

[36]  R. Matthews,et al.  Transcriptional regulation of methionine synthase by homocysteine and choline in Aspergillus nidulans. , 2003, The Biochemical journal.

[37]  M. Blázquez,et al.  A Polyamine Metabolon Involving Aminopropyl Transferase Complexes in Arabidopsis Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.004077. , 2002, The Plant Cell Online.

[38]  Cornelius S. Barry,et al.  The regulation of 1-aminocyclopropane-1-carboxylic acid synthase gene expression during the transition from system-1 to system-2 ethylene synthesis in tomato. , 2000, Plant physiology.

[39]  D J Cosgrove,et al.  Disruption of hydrogen bonding between plant cell wall polymers by proteins that induce wall extension. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[40]  N. Rascio,et al.  Cell Enlargement and Cell Separation During Peach Fruit Development , 1994, International Journal of Plant Sciences.

[41]  S. Benzer,et al.  Monoclonal antibodies against the Drosophila nervous system. , 1982, Proceedings of the National Academy of Sciences of the United States of America.

[42]  B. Møller,et al.  The biosynthesis of cyanogenic glucosides in higher plants. Channeling of intermediates in dhurrin biosynthesis by a microsomal system from Sorghum bicolor (linn) Moench. , 1980, The Journal of biological chemistry.

[43]  Michael Kohl,et al.  Cytoscape: software for visualization and analysis of biological networks. , 2011, Methods in molecular biology.

[44]  H. Hayama,et al.  Cell wall modification during development of mealy texture in the stony-hard peach Odoroki treated with propylene , 2010 .

[45]  M. Quesada,et al.  The polygalacturonase FaPG1 gene plays a key role in strawberry fruit softening. , 2009, Plant signaling & behavior.

[46]  F. He,et al.  Proteomics‐based generation and characterization of monoclonal antibodies against human liver mitochondrial proteins , 2006, Proteomics.

[47]  J M Walker,et al.  The bicinchoninic acid (BCA) assay for protein quantitation. , 1994, Methods in molecular biology.