论文信息 - Plant specimen contextual data consensus

Plant specimen contextual data consensus

Abstract The Compliance and Interoperability Working Group of the Genomic Standards Consortium facilitates the establishment of a community of experts and the development of recommendations to describe genomic data and associated information. Here we present our ongoing conation to harmonise the reporting of contextual plant specimen data associated with genomics and functional genomics. This commentary summarises the current state of our plant sample contextual data harmonisation efforts to engage a broad plant science community.

[1] G. Cochrane,et al. The Genomic Standards Consortium , 2011, PLoS biology.

[2] Tatiana A. Tatusova,et al. BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata , 2011, Nucleic Acids Res..

[3] David L. Wheeler,et al. GenBank , 2015, Nucleic Acids Res..

[4] Robert Petryszak,et al. ArrayExpress update—simplifying data submissions , 2014, Nucleic Acids Res..

[5] Richard Gibson,et al. Content discovery and retrieval services at the European Nucleotide Archive , 2014, Nucleic Acids Res..

[6] Emily S. Charlson,et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications , 2011, Nature Biotechnology.

[7] Matthias Lange,et al. Towards recommendations for metadata and data handling in plant phenotyping. , 2015, Journal of experimental botany.

[8] Doreen Ware,et al. The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences , 2016, PLoS biology.

[9] Nuno A. Fonseca,et al. Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants , 2015, Nucleic Acids Res..