Optimizing cell arrays for accurate functional genomics

[1]  Anne E Carpenter,et al.  Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software , 2011, Bioinform..

[2]  J. Mpindi,et al.  A cell spot microarray method for production of high density siRNA transfection microarrays , 2011, BMC Genomics.

[3]  Rainer Pepperkok,et al.  In situ analysis of tyrosine phosphorylation networks by FLIM on cell arrays , 2010, Nature Methods.

[4]  P. Verveer,et al.  Quantitative microscopy and systems biology: seeing the whole picture , 2008, Histochemistry and Cell Biology.

[5]  A. Lægreid,et al.  Functional studies on transfected cell microarray analysed by linear regression modelling , 2008, Nucleic acids research.

[6]  Doheon Lee,et al.  AsiDesigner: exon-based siRNA design server considering alternative splicing , 2008, Nucleic Acids Res..

[7]  E. Ariazi,et al.  Bioluminescence imaging for assessment and normalization in transfected cell arrays , 2007, Biotechnology and bioengineering.

[8]  H. Iwata,et al.  Array-based functional screening for genes that regulate vascular endothelial differentiation of Flk1-positive progenitors derived from embryonic stem cells. , 2007, Biochimica et biophysica acta.

[9]  Pingzhang Wang,et al.  Screening for novel human genes associated with CRE pathway activation with cell microarray. , 2007, Genomics.

[10]  H. Erfle,et al.  An RNAi screening platform to identify secretion machinery in mammalian cells. , 2007, Journal of biotechnology.

[11]  H. Lehrach,et al.  Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins , 2006, BMC Genomics.

[12]  Andrew D. Miller,et al.  Identification and characterisation of human apoptosis inducing proteins using cell-based transfection microarrays and expression analysis , 2006, BMC Genomics.

[13]  Peter Lichter,et al.  Functional screening for proapoptotic genes by reverse transfection cell array technology. , 2006, Genomics.

[14]  H. Erfle,et al.  High-throughput RNAi screening by time-lapse imaging of live human cells , 2006, Nature Methods.

[15]  Anne E Carpenter,et al.  Microarrays of lentiviruses for gene function screens in immortalized and primary cells , 2006, Nature Methods.

[16]  Emily Hodges,et al.  Accelerated Discovery of Novel Protein Function in Cultured Human Cells *S , 2005, Molecular & Cellular Proteomics.

[17]  Holger Erfle,et al.  siRNA cell arrays for high-content screening microscopy. , 2004, BioTechniques.

[18]  M. Uhler,et al.  Microarray Transfection Analysis of Transcriptional Regulation by cAMP-dependent Protein Kinase* , 2004, Molecular & Cellular Proteomics.

[19]  T. Freeman,et al.  Investigation Into the use of C- and N-terminal GFP Fusion Proteins for Subcellular Localization Studies Using Reverse Transfection Microarrays , 2004, Comparative and functional genomics.

[20]  C. Conrad,et al.  Automatic identification of subcellular phenotypes on human cell arrays. , 2004, Genome research.

[21]  Yoann Roupioz,et al.  Quantitative analysis of highly parallel transfection in cell microarrays. , 2004, Nucleic acids research.

[22]  Masato Miyake,et al.  Transfection microarray of human mesenchymal stem cells and on-chip siRNA gene knockdown. , 2004, Journal of controlled release : official journal of the Controlled Release Society.

[23]  Robert Lucito,et al.  RNA interference microarrays: high-throughput loss-of-function genetics in mammalian cells. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[24]  Fang Lai,et al.  A Reporter System for Reverse Transfection Cell Arrays , 2003, Journal of biomolecular screening.

[25]  E. Dougherty,et al.  RNAi microarray analysis in cultured mammalian cells. , 2003, Genome research.

[26]  Vivek Mittal,et al.  High-throughput selection of effective RNAi probes for gene silencing. , 2003, Genome research.

[27]  R. Tsien,et al.  Reducing the Environmental Sensitivity of Yellow Fluorescent Protein , 2001, The Journal of Biological Chemistry.

[28]  D. Sabatini,et al.  Microarrays of cells expressing defined cDNAs , 2001, Nature.

[29]  B. Efron Nonparametric estimates of standard error: The jackknife, the bootstrap and other methods , 1981 .

[30]  P. Bastiaens,et al.  Optimizing cell arrays for accurate functional , 2012 .

[31]  P. Bastiaens,et al.  High-throughput quantification of posttranslational modifications in situ by CA-FLIM. , 2011, Methods in enzymology.

[32]  H. Erfle,et al.  Reverse transfection on cell arrays for high content screening microscopy , 2007, Nature Protocols.