RNA interactions in the 5' region of the HIV-1 genome.
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[1] Bjarne Knudsen,et al. Pfold: RNA Secondary Structure Prediction Using Stochastic Context-Free Grammars , 2003 .
[2] B. Berkhout,et al. A Novel Long Distance Base-pairing Interaction in Human Immunodeficiency Virus Type 1 RNA Occludes the Gag Start Codon* , 2003, The Journal of Biological Chemistry.
[3] John D. Ivanovitch,et al. Elements located upstream and downstream of the major splice donor site influence the ability of HIV-2 leader RNA to dimerize in vitro. , 2003, Biochemistry.
[4] Ben Berkhout,et al. Dimerization and Template Switching in the 5′ Untranslated Region between Various Subtypes of Human Immunodeficiency Virus Type 1 , 2003, Journal of Virology.
[5] C. Ehresmann,et al. Does the HIV-1 primer activation signal interact with tRNA3(Lys) during the initiation of reverse transcription? , 2003, Nucleic acids research.
[6] C. Ehresmann,et al. Direct and Indirect Contributions of RNA Secondary Structure Elements to the Initiation of HIV-1 Reverse Transcription* , 2002, The Journal of Biological Chemistry.
[7] J. Kjems,et al. hnRNP A1 controls HIV-1 mRNA splicing through cooperative binding to intron and exon splicing silencers in the context of a conserved secondary structure. , 2002, RNA.
[8] B. Berkhout,et al. The tRNA Primer Activation Signal in the Human Immunodeficiency Virus Type 1 Genome Is Important for Initiation and Processive Elongation of Reverse Transcription , 2002, Journal of Virology.
[9] Chantal Ehresmann,et al. In Vitro Evidence for a Long Range Pseudoknot in the 5′-Untranslated and Matrix Coding Regions of HIV-1 Genomic RNA* , 2002, The Journal of Biological Chemistry.
[10] M. Wainberg,et al. Structural and functional properties of the HIV-1 RNA-tRNA(Lys)3 primer complex annealed by the nucleocapsid protein: comparison with the heat-annealed complex. , 2002, RNA.
[11] H. Huthoff,et al. The Dimer Initiation Site Hairpin Mediates Dimerization of the Human Immunodeficiency Virus, Type 2 RNA Genome* , 2001, The Journal of Biological Chemistry.
[12] B. Berkhout,et al. Initiation of HIV-1 Reverse Transcription Is Regulated by a Primer Activation Signal* , 2001, The Journal of Biological Chemistry.
[13] Christian Zwieb,et al. Semi-automated update and cleanup of structural RNA alignment databases , 2001, Bioinform..
[14] H. Huthoff,et al. Mutations in the TAR hairpin affect the equilibrium between alternative conformations of the HIV-1 leader RNA. , 2001, Nucleic acids research.
[15] C. Ehresmann,et al. Identification of the in Vitro HIV-2/SIV RNA Dimerization Site Reveals Striking Differences with HIV-1* , 2001, The Journal of Biological Chemistry.
[16] H. Huthoff,et al. Two alternating structures of the HIV-1 leader RNA. , 2001, RNA.
[17] M. Wainberg,et al. Impact of Human Immunodeficiency Virus Type 1 RNA Dimerization on Viral Infectivity and of Stem-Loop B on RNA Dimerization and Reverse Transcription and Dissociation of Dimerization from Packaging , 2000, Journal of Virology.
[18] B. Berkhout,et al. The leader of the HIV-1 RNA genome forms a compactly folded tertiary structure. , 2000, RNA.
[19] B. Berkhout,et al. Multiple biological roles associated with the repeat (R) region of the HIV-1 RNA genome. , 2000, Advances in pharmacology.
[20] Bjarne Knudsen,et al. RNA secondary structure prediction using stochastic context-free grammars and evolutionary history , 1999, Bioinform..
[21] E. Westhof,et al. Structural basis for the specificity of the initiation of HIV‐1 reverse transcription , 1999, The EMBO journal.
[22] P. Perlman,et al. Photocrosslinking of 4-thio uracil-containing RNAs supports a side-by-side arrangement of domains 5 and 6 of a group II intron. , 1999, RNA.
[23] M. Wainberg,et al. Variant effects of non-native kissing-loop hairpin palindromes on HIV replication and HIV RNA dimerization: role of stem-loop B in HIV replication and HIV RNA dimerization. , 1999, Biochemistry.
[24] J. Puglisi,et al. HIV-1 A-rich RNA loop mimics the tRNA anticodon structure , 1998, Nature Structural Biology.
[25] J. Kjems,et al. Mapping the RNA binding sites for human immunodeficiency virus type-1 gag and NC proteins within the complete HIV-1 and -2 untranslated leader regions. , 1998, Nucleic acids research.
[26] James L. Buescher,et al. Preferential Completion of Human Immunodeficiency Virus Type 1 Proviruses Initiated with tRNA3Lys rather than tRNA1,2Lys , 1998, Journal of Virology.
[27] C. Ehresmann,et al. Mutational analysis of the tRNA3Lys/HIV-1 RNA (primer/template) complex. , 1998, Nucleic acids research.
[28] A. Byström,et al. Interactions between Ty1 Retrotransposon RNA and the T and D Regions of the tRNAiMet Primer Are Required for Initiation of Reverse Transcription In Vivo , 1998, Molecular and Cellular Biology.
[29] Rupert De Wachter,et al. RnaViz, a program for the visualisation of RNA secondary structure , 1997 .
[30] B. Berkhout. The primer binding site on the RNA genome of human and simian immunodeficiency viruses is flanked by an upstream hairpin structure. , 1997, Nucleic acids research.
[31] M. Martin,et al. Incorporation of Pr160(gag-pol) into virus particles requires the presence of both the major homology region and adjacent C-terminal capsid sequences within the Gag-Pol polyprotein , 1997, Journal of virology.
[32] A. Das,et al. Forced evolution of a regulatory RNA helix in the HIV-1 genome. , 1997, Nucleic acids research.
[33] B. Berkhout,et al. Role of the DIS hairpin in replication of human immunodeficiency virus type 1 , 1996, Journal of virology.
[34] M. Wainberg,et al. Initiation of (-) strand DNA synthesis from tRNA(3Lys) on lentiviral RNAs: implications of specific HIV-1 RNA-tRNA(3Lys) interactions inhibiting primer utilization by retroviral reverse transcriptases. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[35] M. Wainberg,et al. Human immunodeficiency virus Type 1 nucleocapsid protein (NCp7) directs specific initiation of minus-strand DNA synthesis primed by human tRNA(Lys3) in vitro: studies of viral RNA molecules mutated in regions that flank the primer binding site , 1996, Journal of virology.
[36] É. Cohen,et al. The human immunodeficiency virus type 1 5' packaging signal structure affects translation but does not function as an internal ribosome entry site structure , 1996, Journal of virology.
[37] C. Ehresmann,et al. Specific initiation and switch to elongation of human immunodeficiency virus type 1 reverse transcription require the post‐transcriptional modifications of primer tRNA3Lys. , 1996, The EMBO journal.
[38] B. Berkhout. Structure and function of the human immunodeficiency virus leader RNA. , 1996, Progress in nucleic acid research and molecular biology.
[39] C. Sassetti,et al. RNA secondary structure and binding sites for gag gene products in the 5' packaging signal of human immunodeficiency virus type 1 , 1995, Journal of virology.
[40] C. Ehresmann,et al. Initiation of Reverse Transcripion of HIV-1: Secondary Structure of the HIV-1 RNA/tRNA|rlmbopopnbop|Lys|clobop|3 (Template/Primer) Complex , 1995 .
[41] B. Berkhout,et al. A conserved hairpin structure predicted for the poly(A) signal of human and simian immunodeficiency viruses. , 1995, Virology.
[42] A. Engelman,et al. An integration-defective U5 deletion mutant of human immunodeficiency virus type 1 reverts by eliminating additional long terminal repeat sequences , 1994, Journal of virology.
[43] C. Ehresmann,et al. Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription. , 1993, The Journal of biological chemistry.
[44] A. Lever,et al. Packaging of human immunodeficiency virus type 1 RNA requires cis-acting sequences outside the 5' leader region , 1993, Journal of virology.
[45] A. Gronenborn,et al. Identification of a binding site for the human immunodeficiency virus type 1 nucleocapsid protein. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[46] A. Panganiban,et al. Simian immunodeficiency virus RNA is efficiently encapsidated by human immunodeficiency virus type 1 particles , 1993, Journal of virology.
[47] C. Ehresmann,et al. Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains. , 1993, Journal of molecular biology.
[48] A. Lever,et al. The human immunodeficiency virus type 1 packaging signal and major splice donor region have a conserved stable secondary structure , 1992, Journal of virology.
[49] Y. Iwakura,et al. RNA packaging signal of human immunodeficiency virus type 1. , 1992, Virology.
[50] D. Capon,et al. Regulation of mRNA accumulation by a human immunodeficiency virus trans-activator protein , 1987, Cell.