A free energy pathway for the interaction of the SRY protein with its binding site on DNA from atomistic simulations.
暂无分享,去创建一个
[1] L. Nilsson,et al. Interaction of human SRY protein with DNA: A molecular dynamics study , 1998, Proteins.
[2] A. Sinclair,et al. Genetic evidence equating SRY and the testis-determining factor , 1990, Nature.
[3] P. V. Hippel. From "Simple" DNA-Protein Interactions to the Macromolecular Machines of Gene Expression , 2007 .
[4] J. Marko,et al. How do site-specific DNA-binding proteins find their targets? , 2004, Nucleic acids research.
[5] D. Baker,et al. Computational redesign of endonuclease DNA binding and cleavage specificity , 2006, Nature.
[6] A M Gronenborn,et al. Minor groove-binding architectural proteins: structure, function, and DNA recognition. , 1998, Annual review of biophysics and biomolecular structure.
[7] Guillaume Paillard,et al. Analyzing protein-DNA recognition mechanisms. , 2004, Structure.
[8] Shandar Ahmad,et al. ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein–DNA recognition , 2006, Nucleic Acids Res..
[9] A. Das,et al. Free‐energy component analysis of 40 protein–DNA complexes: A consensus view on the thermodynamics of binding at the molecular level , 2002, J. Comput. Chem..
[10] Donald M. Crothers,et al. Direct observation of DNA bending/unbending kinetics in complex with DNA-bending protein IHF , 2006, Proceedings of the National Academy of Sciences.
[11] G M Clore,et al. Structural basis for SRY-dependent 46-X,Y sex reversal: modulation of DNA bending by a naturally occurring point mutation. , 2001, Journal of molecular biology.
[12] Thierry Langer,et al. Sequence-specific positions of water molecules at the interface between DNA and minor groove binders. , 2008, Chemphyschem : a European journal of chemical physics and physical chemistry.
[13] M. Zacharias. Minor groove deformability of DNA: a molecular dynamics free energy simulation study. , 2006, Biophysical journal.
[14] L. Mirny,et al. Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential. , 2004, Biophysical journal.
[15] P. Donahoe,et al. An SRY mutation causing human sex reversal resolves a general mechanism of structure-specific DNA recognition: application to the four-way DNA junction. , 1995, Biochemistry.
[16] W. Olson,et al. Bending of DNA by asymmetric charge neutralization: all-atom energy simulations. , 2002, Journal of the American Chemical Society.
[17] R. Coral-Vázquez,et al. Full-length SRY protein is essential for DNA binding. , 2008, Molecular human reproduction.