Changes in substrate availability in Escherichia coli lead to rapid metabolite, flux and growth rate responses.
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Jo Maertens | Gino Baart | Hilal Taymaz-Nikerel | Walter van Gulik | Marjan De Mey | J. Heijnen | W. V. van Gulik | M. De Mey | Hilal Taymaz-Nikerel | Gino Baart | J. Maertens | Joseph J Heijnen
[1] F. Delvigne,et al. Comparison of the transient responses of Escherichia coli to a glucose pulse of various intensities , 2012, Applied Microbiology and Biotechnology.
[2] G. Sanguinetti,et al. Reprogramming of Escherichia coli K-12 Metabolism during the Initial Phase of Transition from an Anaerobic to a Micro-Aerobic Environment , 2011, PloS one.
[3] Hilal Taymaz-Nikerel,et al. Escherichia coli responds with a rapid and large change in growth rate upon a shift from glucose-limited to glucose-excess conditions. , 2011, Metabolic engineering.
[4] J. Heijnen,et al. An in vivo data-driven framework for classification and quantification of enzyme kinetics and determination of apparent thermodynamic data. , 2011, Metabolic engineering.
[5] Amin Espah Borujeni,et al. Genome‐derived minimal metabolic models for Escherichia coli MG1655 with estimated in vivo respiratory ATP stoichiometry , 2010, Biotechnology and bioengineering.
[6] Jo Maertens,et al. Catching prompt metabolite dynamics in Escherichia coli with the BioScope at oxygen rich conditions. , 2010, Metabolic engineering.
[7] U. Sauer,et al. Systems biology of microbial metabolism. , 2010, Current opinion in microbiology.
[8] Matthias Reuss,et al. Prediction of kinetic parameters from DNA-binding site sequences for modeling global transcription dynamics in Escherichia coli. , 2010, Metabolic engineering.
[9] Hyun Uk Kim,et al. Data integration and analysis of biological networks. , 2010, Current opinion in biotechnology.
[10] D. Weuster‐Botz,et al. Rapid media transition: An experimental approach for steady state analysis of metabolic pathways , 2009, Biotechnology progress.
[11] Hilal Taymaz-Nikerel,et al. Development and application of a differential method for reliable metabolome analysis in Escherichia coli. , 2009, Analytical biochemistry.
[12] M. Reuss,et al. In vivo dynamics of glycolysis in Escherichia coli shows need for growth‐rate dependent metabolome analysis , 2008, Biotechnology progress.
[13] Peter D. Karp,et al. EcoCyc: A comprehensive view of Escherichia coli biology , 2008, Nucleic Acids Res..
[14] Frederick R. Blattner,et al. Transcription Profiling of the Stringent Response in Escherichia coli , 2007, Journal of bacteriology.
[15] Erin M. Conlon,et al. Rapid Changes in Gene Expression Dynamics in Response to Superoxide Reveal SoxRS-Dependent and Independent Transcriptional Networks , 2007, PloS one.
[16] Pei Yee Ho,et al. Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations , 2007, Science.
[17] U. Nasution. A dynamic and steady state metabolome study of central metabolism and its relation with the penicillin biosynthesis pathway in Penicillium chrysogenum , 2007 .
[18] Joseph J. Heijnen,et al. A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics , 2006, BMC Bioinformatics.
[19] Yue-qin Tang,et al. Escherichia coli Transcriptome Dynamics during the Transition from Anaerobic to Aerobic Conditions* , 2006, Journal of Biological Chemistry.
[20] J. Pronk,et al. When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation , 2006, Molecular systems biology.
[21] J. Heijnen,et al. Short-Term Metabolome Dynamics and Carbon, Electron, and ATP Balances in Chemostat-Grown Saccharomyces cerevisiae CEN.PK 113-7D following a Glucose Pulse , 2006, Applied and Environmental Microbiology.
[22] J. Heijnen,et al. Changes in the metabolome of Saccharomyces cerevisiae associated with evolution in aerobic glucose-limited chemostats. , 2005, FEMS yeast research.
[23] J. Heijnen,et al. Quantitative analysis of the microbial metabolome by isotope dilution mass spectrometry using uniformly 13C-labeled cell extracts as internal standards. , 2005, Analytical biochemistry.
[24] R. Carlson,et al. Fundamental Escherichia coli biochemical pathways for biomass and energy production: creation of overall flux states , 2004, Biotechnology and bioengineering.
[25] U. Sauer,et al. A Novel Metabolic Cycle Catalyzes Glucose Oxidation and Anaplerosis in Hungry Escherichia coli* , 2003, Journal of Biological Chemistry.
[26] J. Heijnen,et al. Rapid sampling for analysis of in vivo kinetics using the BioScope: a system for continuous-pulse experiments. , 2002, Biotechnology and bioengineering.
[27] C. Chassagnole,et al. Dynamic modeling of the central carbon metabolism of Escherichia coli. , 2002, Biotechnology and bioengineering.
[28] H. Lange,et al. Analysis of glycolytic intermediates in Saccharomyces cerevisiae using anion exchange chromatography and electrospray ionization with tandem mass spectrometric detection , 2002 .
[29] Oliver Fiehn,et al. Combining Genomics, Metabolome Analysis, and Biochemical Modelling to Understand Metabolic Networks , 2001, Comparative and functional genomics.
[30] H C Lim,et al. Regulation of ribosome synthesis in Escherichia coli: Effects of temperature and dilution rate changes , 2000, Biotechnology and bioengineering.
[31] D Weuster-Botz,et al. Automated sampling device for monitoring intracellular metabolite dynamics. , 1999, Analytical biochemistry.
[32] M. Reuss,et al. In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae : I. Experimental observations. , 1997, Biotechnology and bioengineering.
[33] J. Liao. Modelling and analysis of metabolic pathways. , 1993, Current opinion in biotechnology.
[34] R. A. Cook,et al. Characterization of the specific pyruvate transport system in Escherichia coli K-12 , 1987, Journal of bacteriology.
[35] H. Rosenberg,et al. Succinate uptake and related proton movements in Escherichia coli K12. , 1975, The Biochemical journal.
[36] P. Dennis,et al. Macromolecular Composition During Steady-State Growth of Escherichia coli B/r , 1974, Journal of bacteriology.
[37] D. Nierlich. Regulation of Bacterial Growth , 1974, Science.
[38] O. H. Lowry,et al. The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli. , 1971, The Journal of biological chemistry.
[39] A. L. Koch,et al. In vivo assay of protein synthesizing capacity of Escherichia coli from slowly growing chemostat cultures. , 1971, Journal of molecular biology.
[40] R. Mateles,et al. Measurement of Unsteady State Growth Rates of Micro-Organisms , 1965, Nature.
[41] I. E. Nikerel,et al. Model reduction and a priori kinetic parameter identifiability analysis using metabolome time series for metabolic reaction networks with linlog kinetics. , 2009, Metabolic engineering.
[42] R. Takors,et al. Applying metabolic profiling techniques for stimulus-response experiments: chances and pitfalls. , 2005, Advances in biochemical engineering/biotechnology.
[43] Keith Tyo,et al. Metabolic engineering. , 1994, Current opinion in biotechnology.