A nuclear function for an oncogenic microRNA as a modulator of snRNA and splicing
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Anna M. Krichevsky | Yanhong Zhang | R. Rabinovsky | E. Uhlmann | Zhiyun Wei | N. Teplyuk | Evgeny Deforzh | Harini Saravanan | Rachid EI Fatimy | Mahalakshmi Ramadas | Erik J. Uhlmann
[1] Yutaka Suzuki,et al. A single m6A modification in U6 snRNA diversifies exon sequence at the 5’ splice site , 2021, Nature Communications.
[2] Vaishali R. Moulton,et al. Estrogen‐Induced hsa‐miR‐10b‐5p Is Elevated in T Cells From Patients With Systemic Lupus Erythematosus and Down‐Regulates Serine/Arginine‐Rich Splicing Factor 1 , 2021, Arthritis & rheumatology.
[3] D. Corey,et al. Argonaute binding within human nuclear RNA and its impact on alternative splicing , 2021, bioRxiv.
[4] Joshua F. McMichael,et al. Proteogenomic and metabolomic characterization of human glioblastoma. , 2021, Cancer cell.
[5] R. Backofen,et al. ChiRA: an integrated framework for chimeric read analysis from RNA-RNA interactome and RNA structurome data , 2021, GigaScience.
[6] G. Moore,et al. Anomalous collapses of Nares Strait ice arches leads to enhanced export of Arctic sea ice , 2021, Nature communications.
[7] O. Regev,et al. Splicing at the phase-separated nuclear speckle interface: a model , 2020, Nucleic acids research.
[8] E. Chiocca,et al. The nuclear DICER–circular RNA complex drives the deregulation of the glioblastoma cell microRNAome , 2020, Science advances.
[9] H. Stark,et al. Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation , 2020, Science.
[10] W. Gilbert,et al. Regulation and Function of RNA Pseudouridylation in Human Cells. , 2020, Annual review of genetics.
[11] O. Abdel-Wahab,et al. Oncogenic splicing regulated by phase separation , 2020, Nature Cell Biology.
[12] S. Yamashita,et al. Mechanistic insights into m6A modification of U6 snRNA by human METTL16 , 2020, Nucleic acids research.
[13] Ok Hyun Park,et al. Molecular Mechanisms Driving mRNA Degradation by m6A Modification. , 2020, Trends in genetics : TIG.
[14] Marcin Magnus,et al. Rearrangements within the U6 snRNA Core during the Transition between the Two Catalytic Steps of Splicing. , 2019, Molecular cell.
[15] Veronika A. Herzog,et al. Time-Resolved Small RNA Sequencing Unravels the Molecular Principles of MicroRNA Homeostasis. , 2019, Molecular cell.
[16] Shuo Gu,et al. 3' Uridylation Confers miRNAs with Non-canonical Target Repertoires. , 2019, Molecular cell.
[17] R. Yi,et al. Integrated analysis of directly captured microRNA targets reveals the impact of microRNAs on mammalian transcriptome , 2019, bioRxiv.
[18] A. Pasquinelli,et al. miRNA Targeting: Growing beyond the Seed. , 2019, Trends in genetics : TIG.
[19] O. Bischof,et al. Nuclear Translocation of Argonaute 2 in Cytokine-Induced Senescence , 2018, Cellular Physiology and Biochemistry.
[20] T. Nilsen,et al. A Novel Class of MicroRNA Recognition Elements That Function Only in Open Reading Frames , 2018, Nature Structural & Molecular Biology.
[21] M. Hafner,et al. Argonaute-miRNA Complexes Silence Target mRNAs in the Nucleus of Mammalian Stem Cells. , 2018, Molecular cell.
[22] F. Nicassio,et al. Endogenous transcripts control miRNA levels and activity in mammalian cells by target-directed miRNA degradation , 2018, Nature Communications.
[23] D. Castanotto,et al. A stress-induced response complex (SIRC) shuttles miRNAs, siRNAs, and oligonucleotides to the nucleus , 2018, Proceedings of the National Academy of Sciences.
[24] María del Mar Maldonado,et al. Targeting Rac and Cdc42 GTPases in Cancer. , 2018, Cancer research.
[25] H. Dvinge,et al. RNA components of the spliceosome regulate tissue- and cancer-specific alternative splicing , 2018, bioRxiv.
[26] Desheng Xiao,et al. Nuclear functions of mammalian MicroRNAs in gene regulation, immunity and cancer , 2018, Molecular Cancer.
[27] H. Rupasinghe,et al. Kinase-targeted cancer therapies: progress, challenges and future directions , 2018, Molecular Cancer.
[28] K. Nagai,et al. Molecular Mechanism and Evolution of Nuclear Pre-mRNA and Group II Intron Splicing: Insights from Cryo-Electron Microscopy Structures. , 2018, Chemical reviews.
[29] S. Butcher,et al. The life of U6 small nuclear RNA, from cradle to grave , 2018, RNA.
[30] Qi Zhou,et al. MicroRNA-494 promotes cancer progression and targets adenomatous polyposis coli in colorectal cancer , 2018, Molecular Cancer.
[31] C. Lenz,et al. Human METTL16 is a N6‐methyladenosine (m6A) methyltransferase that targets pre‐mRNAs and various non‐coding RNAs , 2017, EMBO reports.
[32] P. Barbry,et al. Post-transcriptional gene silencing mediated by microRNAs is controlled by nucleoplasmic Sfpq , 2017, Nature Communications.
[33] Yang Wang,et al. Coding and noncoding landscape of extracellular RNA released by human glioma stem cells , 2017, Nature Communications.
[34] S. Mohammed,et al. Nuclear phosphorylated Dicer processes double-stranded RNA in response to DNA damage , 2017, The Journal of cell biology.
[35] Yang Xie,et al. The U6 snRNA m6A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention , 2017, Cell.
[36] K. Gunsalus,et al. A non-canonical site reveals the cooperative mechanisms of microRNA-mediated silencing , 2017, Nucleic acids research.
[37] D. Cohen,et al. Publisher's Note , 2017, Neuroscience & Biobehavioral Reviews.
[38] A. Bhardwaj,et al. In situ click chemistry generation of cyclooxygenase-2 inhibitors , 2017, Nature Communications.
[39] Anna M. Krichevsky,et al. Genome Editing Reveals Glioblastoma Addiction to MicroRNA-10b. , 2017, Molecular therapy : the journal of the American Society of Gene Therapy.
[40] Li Ma,et al. Ablation of miR-10b Suppresses Oncogene-Induced Mammary Tumorigenesis and Metastasis and Reactivates Tumor-Suppressive Pathways. , 2016, Cancer research.
[41] William A. Rennie,et al. STarMirDB: A database of microRNA binding sites , 2016, RNA biology.
[42] E. Chiocca,et al. Therapeutic potential of targeting microRNA‐10b in established intracranial glioblastoma: first steps toward the clinic , 2016, EMBO molecular medicine.
[43] Charles M. Rice,et al. miRNA–target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity , 2015, Nature Communications.
[44] G. Lou,et al. Differential distribution of U6 (RNU6-1) expression in human carcinoma tissues demonstrates the requirement for caution in the internal control gene selection for microRNA quantification. , 2015, International journal of molecular medicine.
[45] A. Fire,et al. Functional relevance of “seed” and “non-seed” sequences in microRNA-mediated promotion of C. elegans developmental progression , 2015, RNA.
[46] Sjors H. W. Scheres,et al. The architecture of the spliceosomal U4/U6.U5 tri-snRNP , 2015, Nature.
[47] M. Yi,et al. MicroRNA-10b inhibition reduces E2F1-mediated transcription and miR-15/16 activity in glioblastoma , 2015, Oncotarget.
[48] J. Valcárcel,et al. Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells , 2014, Proceedings of the National Academy of Sciences.
[49] Anindita Basak,et al. A pseudouridine residue in the spliceosome core is part of the filamentous growth program in yeast. , 2014, Cell reports.
[50] J. Piccirilli,et al. Evidence for a group II intron-like catalytic triplex in the spliceosome , 2014, Nature Structural &Molecular Biology.
[51] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[52] Yongjun Chu,et al. RNAi Factors are Present and Active in Human Cell Nuclei , 2014, Cell reports.
[53] Heng Li. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM , 2013, 1303.3997.
[54] D. Schiff,et al. Oncogenic effects of miR-10b in glioblastoma stem cells , 2013, Journal of Neuro-Oncology.
[55] S. Teo,et al. MicroRNA-10b pleiotropically regulates invasion, angiogenicity and apoptosis of tumor cells resembling mesenchymal subtype of glioblastoma multiforme , 2012, Cell Death and Disease.
[56] Annick Harel-Bellan,et al. Argonaute proteins couple chromatin silencing to alternative splicing , 2012, Nature Structural &Molecular Biology.
[57] S. Pastorino,et al. MicroRNAs in cerebrospinal fluid identify glioblastoma and metastatic brain cancers and reflect disease activity. , 2012, Neuro-oncology.
[58] Anna M. Krichevsky,et al. Context effect: microRNA-10b in cancer cell proliferation, spread and death , 2011, Autophagy.
[59] A. Lund,et al. The miR-10 microRNA precursor family , 2011, RNA biology.
[60] Lawrence J. Clos,et al. A novel occluded RNA recognition motif in Prp24 unwinds the U6 RNA internal stem loop , 2011, Nucleic acids research.
[61] Ming Yi,et al. Human glioma growth is controlled by microRNA-10b. , 2011, Cancer research.
[62] O. Bensaude,et al. Inhibiting eukaryotic transcription. Which compound to choose? How to evaluate its activity? , 2011, Transcription.
[63] Shuling Guo,et al. Efficient and specific knockdown of small non-coding RNAs in mammalian cells and in mice , 2010, Nucleic acids research.
[64] W. Filipowicz,et al. Regulation of mRNA translation and stability by microRNAs. , 2010, Annual review of biochemistry.
[65] A. Lund. miR-10 in development and cancer , 2010, Cell Death and Differentiation.
[66] Thoru Pederson,et al. MicroRNAs with a nucleolar location. , 2009, RNA.
[67] C. Will,et al. The Spliceosome: Design Principles of a Dynamic RNP Machine , 2009, Cell.
[68] R. Weinberg,et al. Tumour invasion and metastasis initiated by microRNA-10b in breast cancer , 2007, Nature.
[69] Martin A. M. Reijns,et al. The Lsm2-8 complex determines nuclear localization of the spliceosomal U6 snRNA , 2007, Nucleic acids research.
[70] E. Wentzel,et al. A Hexanucleotide Element Directs MicroRNA Nuclear Import , 2007, Science.
[71] Dipali G. Sashital,et al. U2–U6 RNA folding reveals a group II intron-like domain and a four-helix junction , 2004, Nature Structural &Molecular Biology.
[72] T. Tuschl,et al. Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. , 2004, Molecular cell.
[73] Hervé Seitz,et al. Identification of 13 novel human modification guide RNAs. , 2003, Nucleic acids research.
[74] C. Burge,et al. The microRNAs of Caenorhabditis elegans. , 2003, Genes & development.
[75] C. Guthrie,et al. A conserved Lsm-interaction motif in Prp24 required for efficient U4/U6 di-snRNP formation. , 2002, RNA.
[76] A. Weiner,et al. Sequences upstream of the branch site are required to form helix II between U2 and U6 snRNA in a trans-splicing reaction. , 2001, Nucleic acids research.
[77] C. Branlant,et al. A limited number of pseudouridine residues in the human atac spliceosomal UsnRNAs as compared to human major spliceosomal UsnRNAs. , 1999, RNA.
[78] Ram Reddy,et al. Accurate and efficient N-6-adenosine methylation in spliceosomal U6 small nuclear RNA by HeLa cell extract in vitro , 1995, Nucleic Acids Res..
[79] J. Steitz,et al. Isolation of small nuclear ribonucleoproteins containing U1, U2, U4, U5, and U6 RNAs. , 1983, The Journal of biological chemistry.
[80] Vaishali R. Moulton,et al. Estrogen-induced hsa-miR-10b-5p is elevated in T cells from patients with systemic lupus erythematosus and downregulates splicing factor SRSF1 , 2021 .
[81] Z. Medarova,et al. The fundamental role of miR-10b in metastatic cancer. , 2018, American journal of cancer research.
[82] J. Beggs,et al. The Lsm 2-8 complex determines nuclear localization of the spliceosomal U 6 snRNA , 2007 .