Characteristics of Transposable Element Exonization within Human and Mouse
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Agnes Hotz-Wagenblatt | Britta Mersch | Gil Ast | Noa Sela | G. Ast | B. Mersch | A. Hotz-Wagenblatt | N. Sela
[1] Brenton R Graveley,et al. The haplo-spliceo-transcriptome: common variations in alternative splicing in the human population. , 2008, Trends in genetics : TIG.
[2] J. Jurka,et al. A universal classification of eukaryotic transposable elements implemented in Repbase , 2008, Nature Reviews Genetics.
[3] Ryan E. Mills,et al. Which transposable elements are active in the human genome? , 2007, Trends in genetics : TIG.
[4] Schraga Schwartz,et al. Alu Exonization Events Reveal Features Required for Precise Recognition of Exons by the Splicing Machinery , 2009, PLoS Comput. Biol..
[5] M. Batzer,et al. Evolution of Retroposons , 1993 .
[6] G. Ast,et al. Multifactorial Interplay Controls the Splicing Profile of Alu-Derived Exons , 2008, Molecular and Cellular Biology.
[7] Eli Eisenberg,et al. RNA-editing-mediated exon evolution , 2007, Genome Biology.
[8] J. Jurka,et al. Evolutionary history of 7SL RNA-derived SINEs in Supraprimates. , 2007, Trends in genetics : TIG.
[9] G. Ast,et al. SERpredict: Detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements , 2007, BMC Genetics.
[10] M. Soares,et al. High-throughput sequence-based epigenomic analysis of Alu repeats in human cerebellum , 2009, Nucleic acids research.
[11] N. Bresolin,et al. Fixation of conserved sequences shapes human intron size and influences transposon-insertion dynamics. , 2005, Trends in genetics : TIG.
[12] A. Nekrutenko,et al. Transposable elements are found in a large number of human protein-coding genes. , 2001, Trends in genetics : TIG.
[13] J. Brosius,et al. Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs). , 2007, Genome research.
[14] Elizabeth M. Smigielski,et al. dbSNP: the NCBI database of genetic variation , 2001, Nucleic Acids Res..
[15] Tao Liu,et al. NONCODE v2.0: decoding the non-coding , 2007, Nucleic Acids Res..
[16] S. Scherer,et al. Identification and characterization of an imprinted antisense RNA (MESTIT1) in the human MEST locus on chromosome 7q32. , 2002, Human molecular genetics.
[17] Rotem Sorek,et al. The birth of new exons: mechanisms and evolutionary consequences. , 2007, RNA.
[18] André Corvelo,et al. Exon creation and establishment in human genes , 2008, Genome Biology.
[19] Agnes Hotz-Wagenblatt,et al. Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome , 2007, Genome Biology.
[20] J. Nemes,et al. The SCA8 transcript is an antisense RNA to a brain-specific transcript encoding a novel actin-binding protein (KLHL1). , 2000, Human molecular genetics.
[21] D. Cane,et al. The nonsense-mediated decay RNA surveillance pathway. , 2007, Annual review of biochemistry.
[22] G. Ast,et al. Different levels of alternative splicing among eukaryotes , 2006, Nucleic acids research.
[23] T. Bird,et al. An untranslated CTG expansion causes a novel form of spinocerebellar ataxia (SCA8) , 1999, Nature Genetics.
[24] G. Ast,et al. Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene , 2007, BMC Molecular Biology.
[25] W. Eckert,et al. Characterization of an authentic intermediate in the self-splicing process of ribosomal precursor RNA in macronuclei of Tetrahymena thermophila. , 1987, Nucleic acids research.
[26] M. Batzer,et al. Alu repeats and human disease. , 1999, Molecular genetics and metabolism.
[27] Lan Lin,et al. Large-scale analysis of exonized mammalian-wide interspersed repeats in primate genomes. , 2009, Human molecular genetics.
[28] Richard Wooster,et al. A survey of RNA editing in human brain. , 2004, Genome research.
[29] Dan Graur,et al. Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons. , 2004, Molecular cell.
[30] Jacek Majewski,et al. Genome-wide analysis of transcript isoform variation in humans , 2008, Nature Genetics.
[31] Zipora Y. Fligelman,et al. Systematic identification of abundant A-to-I editing sites in the human transcriptome , 2004, Nature Biotechnology.
[32] Noam Shomron,et al. The Birth of an Alternatively Spliced Exon: 3' Splice-Site Selection in Alu Exons , 2003, Science.
[33] International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome , 2001, Nature.
[34] E. Eyras,et al. The Pivotal Roles of TIA Proteins in 5′ Splice-Site Selection of Alu Exons and Across Evolution , 2009, PLoS genetics.
[35] S. Brenner,et al. An unappreciated role for RNA surveillance , 2004, Genome Biology.
[36] T. Matise,et al. Widespread RNA editing of embedded alu elements in the human transcriptome. , 2004, Genome research.
[37] M. Hentze,et al. The Hierarchy of Exon-Junction Complex Assembly by the Spliceosome Explains Key Features of Mammalian Nonsense-Mediated mRNA Decay , 2009, PLoS biology.
[38] Gil Ast,et al. The importance of being divisible by three in alternative splicing , 2005, Nucleic acids research.
[39] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[40] Dan Graur,et al. Alu-containing exons are alternatively spliced. , 2002, Genome research.
[41] Gil Ast,et al. How did alternative splicing evolve? , 2004, Nature Reviews Genetics.
[42] Terrence S. Furey,et al. The UCSC Table Browser data retrieval tool , 2004, Nucleic Acids Res..
[43] Alexander Rich,et al. Widespread A-to-I RNA Editing of Alu-Containing mRNAs in the Human Transcriptome , 2004, PLoS biology.
[44] D. Labuda,et al. Sequence conservation in Alu evolution. , 1989, Nucleic acids research.
[45] M. Batzer,et al. Alu repeats and human genomic diversity , 2002, Nature Reviews Genetics.
[46] N. Bresolin,et al. Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns , 2006, Genome Biology.
[47] J. Brosius,et al. From "junk" to gene: curriculum vitae of a primate receptor isoform gene. , 2004, Journal of molecular biology.
[48] Mary Goldman,et al. The UCSC Genome Browser database: update 2011 , 2010, Nucleic Acids Res..
[49] Yi Xing,et al. Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation. , 2004, Nucleic acids research.
[50] L. Chasin,et al. Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons , 2006, Proceedings of the National Academy of Sciences.
[51] Wei-Lun Chen,et al. SCA8 mRNA expression suggests an antisense regulation of KLHL1 and correlates to SCA8 pathology , 2008, Brain Research.
[52] Yi Zhao,et al. NONCODE: an integrated knowledge database of non-coding RNAs , 2004, Nucleic Acids Res..
[53] Richard Cordaux,et al. Estimating the retrotransposition rate of human Alu elements. , 2006, Gene.
[54] Asaf Levy,et al. TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates , 2007, Nucleic Acids Res..
[55] Yi Xing,et al. Diverse Splicing Patterns of Exonized Alu Elements in Human Tissues , 2008, PLoS genetics.
[56] W. Keller,et al. Two forms of human double-stranded RNA-specific editase 1 (hRED1) generated by the insertion of an Alu cassette. , 1997, RNA.
[57] J. V. Moran,et al. Initial sequencing and analysis of the human genome. , 2001, Nature.
[58] Daniel J. Blankenberg,et al. Galaxy: a platform for interactive large-scale genome analysis. , 2005, Genome research.
[59] Nadav Ahituv,et al. Alternative approach to a heavy weight problem. , 2008, Genome research.
[60] H. Xue,et al. Alu-associated enhancement of single nucleotide polymorphisms in the human genome. , 2006, Gene.
[61] Martin S. Taylor,et al. Identification of Common Genetic Variation That Modulates Alternative Splicing , 2007, PLoS genetics.
[62] Jong Bhak,et al. ssSNPTarget: genome‐wide splice‐site single nucleotide polymorphism database , 2009, Human mutation.
[63] David Haussler,et al. The UCSC genome browser database: update 2007 , 2006, Nucleic Acids Res..
[64] Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome , 2002, Nature.
[65] D. Labuda,et al. Alu sequences in the coding regions of mRNA: a source of protein variability. , 1994, Trends in genetics : TIG.
[66] J. Jurka. Repbase update: a database and an electronic journal of repetitive elements. , 2000, Trends in genetics : TIG.
[67] David N. Messina,et al. Evolutionary and Biomedical Insights from the Rhesus Macaque Genome , 2007, Science.
[68] Christopher J. Lee,et al. Alternative splicing and RNA selection pressure — evolutionary consequences for eukaryotic genomes , 2006, Nature Reviews Genetics.
[69] Christopher J. Lee,et al. The effect of intron length on exon creation ratios during the evolution of mammalian genomes. , 2008, RNA.
[70] J. Brosius,et al. Beyond DNA: RNA editing and steps toward Alu exonization in primates. , 2008, Journal of molecular biology.
[71] J. Jurka,et al. Repbase Update, a database of eukaryotic repetitive elements , 2005, Cytogenetic and Genome Research.
[72] G. Ast,et al. Alternative splicing of Alu exons—two arms are better than one , 2008, Nucleic acids research.
[73] Harry Zuzan,et al. Heritability of alternative splicing in the human genome. , 2007, Genome research.
[74] H. Xue,et al. Association of SNPs and haplotypes in GABAA receptor β2 gene with schizophrenia , 2004, Molecular Psychiatry.