KRAB zinc finger proteins
暂无分享,去创建一个
[1] River Lord. High Resolution , 2019, Colorado Review.
[2] S. Hainsworth,et al. Critical assessment 26: forensic metallurgy – the difficulties , 2017 .
[3] D. Trono,et al. The mouse genome displays highly dynamic populations of KRAB-zinc finger protein genes and related genetic units , 2017, PloS one.
[4] D. Trono,et al. KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks , 2017, Nature.
[5] Andrew Emili,et al. Multiparameter functional diversity of human C2H2 zinc finger proteins , 2016, Genome research.
[6] D. Mager,et al. Endogenous retroviral promoter exaptation in human cancer , 2016, Mobile DNA.
[7] C. Feschotte,et al. Regulatory activities of transposable elements: from conflicts to benefits , 2016, Nature Reviews Genetics.
[8] J. García-Pérez,et al. The impact of transposable elements on mammalian development , 2016, Development.
[9] R. Jaenisch,et al. Molecular Criteria for Defining the Naive Human Pluripotent State , 2016, Cell stem cell.
[10] A. Churchill,et al. The Transcriptional Repressive Activity of KRAB Zinc Finger Proteins Does Not Correlate with Their Ability to Recruit TRIM28 , 2016, PloS one.
[11] M. Lorincz,et al. Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire. , 2016, Molecular cell.
[12] Mohammad M. Karimi,et al. Onco-exaptation of an endogenous retroviral LTR drives IRF5 expression in Hodgkin lymphoma , 2016, Oncogene.
[13] H. Kazazian,et al. Roles for retrotransposon insertions in human disease , 2016, Mobile DNA.
[14] D. Steinemann,et al. The stem cell zinc finger 1 (SZF1)/ZNF589 protein has a human-specific evolutionary nucleotide DNA change and acts as a regulator of cell viability in the hematopoietic system. , 2016, Experimental hematology.
[15] Helen M. Rowe,et al. Transposable Elements and Their KRAB-ZFP Controllers Regulate Gene Expression in Adult Tissues. , 2016, Developmental cell.
[16] C. Feschotte,et al. Regulatory evolution of innate immunity through co-option of endogenous retroviruses , 2016, Science.
[17] A. Wong,et al. The evolution of gene expression and binding specificity of the largest transcription factor family in primates , 2016, Evolution; international journal of organic evolution.
[18] Robert D. Finn,et al. The Dfam database of repetitive DNA families , 2015, Nucleic Acids Res..
[19] D. Trono,et al. The developmental control of transposable elements and the evolution of higher species. , 2015, Annual review of cell and developmental biology.
[20] D. Greenberg,et al. Spotting the enemy within: Targeted silencing of foreign DNA in mammalian genomes by the Krüppel-associated box zinc finger protein family , 2015, Mobile DNA.
[21] D. Greenberg,et al. Spotting the enemy within: Targeted silencing of foreign DNA in mammalian genomes by the Krüppel-associated box zinc finger protein family , 2015, Mobile DNA.
[22] D. Chalopin,et al. Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates , 2015, Chromosome Research.
[23] A. Schürmann,et al. The diabetes gene Zfp69 modulates hepatic insulin sensitivity in mice , 2015, Diabetologia.
[24] Katherine E. Kyle,et al. The histone methyltransferase SETDB1 represses endogenous and exogenous retroviruses in B lymphocytes , 2015, Proceedings of the National Academy of Sciences.
[25] Felix Krueger,et al. Allele-specific binding of ZFP57 in the epigenetic regulation of imprinted and non-imprinted monoallelic expression , 2015, Genome Biology.
[26] S. Gasser,et al. Repeat DNA in genome organization and stability. , 2015, Current opinion in genetics & development.
[27] Tisha Chung,et al. A family of transposable elements co-opted into developmental enhancers in the mouse neocortex , 2015, Nature Communications.
[28] Kyudong Han,et al. Transposable element-driven transcript diversification and its relevance to genetic disorders. , 2015, Gene.
[29] E. Füchtbauer,et al. The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses , 2015, Genes & development.
[30] Mihai Albu,et al. C2H2 zinc finger proteins greatly expand the human regulatory lexicon , 2015, Nature Biotechnology.
[31] Howard Y. Chang,et al. Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells , 2015, Nature.
[32] D. Mager,et al. Mammalian Endogenous Retroviruses. , 2015, Microbiology spectrum.
[33] H. Ng,et al. Dynamic transcription of distinct classes of endogenous retroviral elements marks specific populations of early human embryonic cells. , 2015, Cell stem cell.
[34] Floriane Plard,et al. Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates , 2015, Genome biology and evolution.
[35] D. Trono,et al. TRIM28 Represses Transcription of Endogenous Retroviruses in Neural Progenitor Cells , 2014, Cell reports.
[36] D. Trono,et al. As time goes by: KRABs evolve to KAP endogenous retroelements. , 2014, Developmental cell.
[37] L. Hurst,et al. Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells , 2014, Nature.
[38] David Haussler,et al. An evolutionary arms race between KRAB zinc finger genes 91/93 and SVA/L1 retrotransposons , 2014, Nature.
[39] Jennifer A. Erwin,et al. Mobile DNA elements in the generation of diversity and complexity in the brain , 2014, Nature Reviews Neuroscience.
[40] D. Trono,et al. Evolutionally dynamic L1 regulation in embryonic stem cells , 2014, Genes & development.
[41] D. Trono,et al. Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements , 2014, Genome research.
[42] A. Sandelin,et al. Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance , 2014, Nature Genetics.
[43] F. R. Santoni de Sio. Kruppel-associated box (KRAB) proteins in the adaptive immune system , 2014, Nucleus.
[44] L. Stubbs,et al. Deep Vertebrate Roots for Mammalian Zinc Finger Transcription Factor Subfamilies , 2014, Genome biology and evolution.
[45] T. Heidmann,et al. Paleovirology of ‘syncytins’, retroviral env genes exapted for a role in placentation , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[46] Ruiqiang Li,et al. Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells , 2013, Nature Structural &Molecular Biology.
[47] S. Horvath,et al. Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing , 2013, Nature.
[48] A. Lupo,et al. KRAB-Zinc Finger Proteins: A Repressor Family Displaying Multiple Biological Functions , 2013, Current genomics.
[49] Victor V Lobanenkov,et al. A genome-wide map of CTCF multivalency redefines the CTCF code. , 2013, Cell reports.
[50] S. Pfaff,et al. Transposable elements as genetic regulatory substrates in early development. , 2013, Trends in cell biology.
[51] Ray Marcel Marin-Florez,et al. A KRAB/KAP1-miRNA Cascade Regulates Erythropoiesis Through Stage-Specific Control of Mitophagy , 2013, Science.
[52] Helen M. Rowe,et al. TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells , 2013, Genome research.
[53] Andrea Corsinotti,et al. Global and Stage Specific Patterns of Krüppel-Associated-Box Zinc Finger Protein Gene Expression in Murine Early Embryonic Cells , 2013, PloS one.
[54] J. Baker,et al. Endogenous retroviruses function as species-specific enhancer elements in the placenta , 2013, Nature Genetics.
[55] Helen M. Rowe,et al. De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET , 2013, Development.
[56] D. Mager,et al. Transposable elements: an abundant and natural source of regulatory sequences for host genes. , 2012, Annual review of genetics.
[57] James H. Thomas,et al. KAP1 regulates gene networks controlling T‐cell development and responsiveness , 2012, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[58] D. Trono,et al. The KRAB-ZFP/KAP1 system contributes to the early embryonic establishment of site-specific DNA methylation patterns maintained during development. , 2012, Cell reports.
[59] D. Trono,et al. Liver‐specific ablation of Krüppel‐associated box–associated protein 1 in mice leads to male‐predominant hepatosteatosis and development of liver adenoma , 2012, Hepatology.
[60] T. Shimogori,et al. A SINE-Derived Element Constitutes a Unique Modular Enhancer for Mammalian Diencephalic Fgf8 , 2012, PloS one.
[61] D. C. Schultz,et al. The KRAB Zinc Finger Protein RSL1 Regulates Sex- and Tissue-Specific Promoter Methylation and Dynamic Hormone-Responsive Chromatin Configuration , 2012, Molecular and Cellular Biology.
[62] D. C. Hancks,et al. Active human retrotransposons: variation and disease. , 2012, Current opinion in genetics & development.
[63] D. Mager,et al. C-GATE - catalogue of genes affected by transposable elements , 2012, Mobile DNA.
[64] James H. Thomas,et al. KAP1 regulates gene networks controlling mouse B-lymphoid cell differentiation and function. , 2012, Blood.
[65] J. Nichols,et al. The Stat6-regulated KRAB domain zinc finger protein Zfp157 regulates the balance of lineages in mammary glands and compensates for loss of Gata-3. , 2012, Genes & development.
[66] T. Honjo,et al. TRIM28 prevents autoinflammatory T cell development in vivo , 2012, Nature Immunology.
[67] Yan Zeng,et al. Knockdown of ZNF268, which Is Transcriptionally Downregulated by GATA-1, Promotes Proliferation of K562 Cells , 2012, PloS one.
[68] K. Liem,et al. TRIM28 is required by the mouse KRAB domain protein ZFP568 to control convergent extension and morphogenesis of extra-embryonic tissues , 2011, Development.
[69] M. Kyba,et al. Zinc Finger Protein ZFP57 Requires Its Co-factor to Recruit DNA Methyltransferases and Maintains DNA Methylation Imprint in Embryonic Stem Cells via Its Transcriptional Repression Domain* , 2011, The Journal of Biological Chemistry.
[70] M. Batzer,et al. Repetitive Elements May Comprise Over Two-Thirds of the Human Genome , 2011, PLoS genetics.
[71] D. Trono,et al. In Embryonic Stem Cells, ZFP57/KAP1 Recognize a Methylated Hexanucleotide to Affect Chromatin and DNA Methylation of Imprinting Control Regions , 2011, Molecular cell.
[72] R. Löwer,et al. The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery , 2011, Nucleic acids research.
[73] James H. Thomas,et al. Coevolution of retroelements and tandem zinc finger genes. , 2011, Genome research.
[74] T. Heidmann,et al. A pair of co-opted retroviral envelope syncytin genes is required for formation of the two-layered murine placental syncytiotrophoblast , 2011, Proceedings of the National Academy of Sciences.
[75] Peggy J. Farnham,et al. KAP1 Protein: An Enigmatic Master Regulator of the Genome* , 2011, The Journal of Biological Chemistry.
[76] Ying Zhang,et al. Distributions of Transposable Elements Reveal Hazardous Zones in Mammalian Introns , 2011, PLoS Comput. Biol..
[77] A. Lupo,et al. ZNF224: Structure and role of a multifunctional KRAB-ZFP protein. , 2011, The international journal of biochemistry & cell biology.
[78] Maho Shibata,et al. The mouse KRAB zinc-finger protein CHATO is required in embryonic-derived tissues to control yolk sac and placenta morphogenesis. , 2011, Developmental biology.
[79] Henriette O'Geen,et al. ZNF274 Recruits the Histone Methyltransferase SETDB1 to the 3′ Ends of ZNF Genes , 2010, PloS one.
[80] Huanjie Shao,et al. PU.1 can regulate the ZNF300 promoter in APL-derived promyelocytes HL-60. , 2010, Leukemia research.
[81] G. Mizuguchi,et al. Stepwise Histone Replacement by SWR1 Requires Dual Activation with Histone H2A.Z and Canonical Nucleosome , 2010, Cell.
[82] S. Izui,et al. Role of endogenous retroviruses in murine SLE. , 2010, Autoimmunity reviews.
[83] Katja Nowick,et al. Rapid sequence and expression divergence suggest selection for novel function in primate-specific KRAB-ZNF genes. , 2010, Molecular biology and evolution.
[84] G. Montano,et al. Biochemical and functional interaction between ZNF224 and ZNF255, two members of the Kruppel-like zinc-finger protein family and WT1 protein isoforms. , 2010, Human molecular genetics.
[85] Christopher Power,et al. Human endogenous retroviruses and multiple sclerosis: Innocent bystanders or disease determinants? , 2010, Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease.
[86] D. Mager,et al. Potential mechanisms of endogenous retroviral-mediated genomic instability in human cancer. , 2010, Seminars in cancer biology.
[87] H. Kazazian,et al. SVA retrotransposons: Evolution and genetic instability. , 2010, Seminars in cancer biology.
[88] G. Bourque,et al. Transposable elements have rewired the core regulatory network of human embryonic stem cells , 2010, Nature Genetics.
[89] Ralph Stadhouders,et al. Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma , 2010, Nature Medicine.
[90] P. Deininger,et al. Somatic expression of LINE-1 elements in human tissues , 2010, Nucleic acids research.
[91] H. Kimura,et al. Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET , 2010, Nature.
[92] Helen M. Rowe,et al. KAP1 controls endogenous retroviruses in embryonic stem cells , 2010, Nature.
[93] L. Stubbs,et al. Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain , 2009, Proceedings of the National Academy of Sciences.
[94] D. Mager,et al. Endogenous retroviral LTRs as promoters for human genes: a critical assessment. , 2009, Gene.
[95] Victor X. Jin,et al. Genomic Targets of the KRAB and SCAN Domain-containing Zinc Finger Protein 263* , 2009, The Journal of Biological Chemistry.
[96] T. Nagase,et al. KAP1-independent transcriptional repression of SCAN-KRAB-containing zinc finger proteins. , 2009, Biochemical and biophysical research communications.
[97] G. Agrimi,et al. Transcription of the mitochondrial citrate carrier gene: identification of a silencer and its binding protein ZNF224. , 2009, Biochemical and biophysical research communications.
[98] P. Opolon,et al. Syncytin-A knockout mice demonstrate the critical role in placentation of a fusogenic, endogenous retrovirus-derived, envelope gene , 2009, Proceedings of the National Academy of Sciences.
[99] J. Kawai,et al. The regulated retrotransposon transcriptome of mammalian cells , 2009, Nature Genetics.
[100] S. Goff,et al. Embryonic stem cells use ZFP809 to silence retroviral DNAs , 2009, Nature.
[101] R. Emerson,et al. Adaptive Evolution in Zinc Finger Transcription Factors , 2009, PLoS genetics.
[102] C. Sandi,et al. KAP1-Mediated Epigenetic Repression in the Forebrain Modulates Behavioral Vulnerability to Stress , 2008, Neuron.
[103] E. Liu,et al. Evolution of the mammalian transcription factor binding repertoire via transposable elements. , 2008, Genome research.
[104] I. Maksakova,et al. Endogenous retroviruses , 2008, Cellular and Molecular Life Sciences.
[105] P. Leder,et al. A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints. , 2008, Developmental cell.
[106] C. Feschotte,et al. DNA transposons and the evolution of eukaryotic genomes. , 2007, Annual review of genetics.
[107] M. Wiznerowicz,et al. The Krüppel-associated Box Repressor Domain Can Trigger de Novo Promoter Methylation during Mouse Early Embryogenesis* , 2007, Journal of Biological Chemistry.
[108] D. Haussler,et al. Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53 , 2007, Proceedings of the National Academy of Sciences.
[109] S. Goff,et al. TRIM28 Mediates Primer Binding Site-Targeted Silencing of Murine Leukemia Virus in Embryonic Cells , 2007, Cell.
[110] C. Feschotte,et al. The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage. , 2007, Genome research.
[111] M. Pagel,et al. Origin of avian genome size and structure in non-avian dinosaurs , 2007, Nature.
[112] D. C. Schultz,et al. The KAP1 Corepressor Functions To Coordinate the Assembly of De Novo HP1-Demarcated Microenvironments of Heterochromatin Required for KRAB Zinc Finger Protein-Mediated Transcriptional Repression , 2006, Molecular and Cellular Biology.
[113] Liane Gagnier,et al. Retroviral Elements and Their Hosts: Insertional Mutagenesis in the Mouse Germ Line , 2006, PLoS genetics.
[114] S. d'Auria,et al. Structure/function of KRAB repression domains: Structural properties of KRAB modules inferred from hydrodynamic, circular dichroism, and FTIR spectroscopic analyses , 2005, Proteins.
[115] A. Lupo,et al. The Krüppel-like zinc-finger protein ZNF224 represses aldolase A gene transcription by interacting with the KAP-1 co-repressor protein. , 2005, Gene.
[116] Elaine R. Mardis,et al. A physical map of the chicken genome , 2004, Nature.
[117] A. Evsikov,et al. Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. , 2004, Developmental cell.
[118] H. Kazazian. Mobile Elements: Drivers of Genome Evolution , 2004, Science.
[119] Raymond D. Miller,et al. Regulator of sex-limitation (Rsl) encodes a pair of KRAB zinc-finger genes that control sexually dimorphic liver gene expression. , 2003, Genes & Development.
[120] R. Urrutia. KRAB-containing zinc-finger repressor proteins , 2003, Genome Biology.
[121] L. N. van de Lagemaat,et al. Retroelement distributions in the human genome: variations associated with age and proximity to genes. , 2002, Genome research.
[122] G. Maul,et al. SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins. , 2002, Genes & development.
[123] W A Scaringe,et al. Frequency of recent retrotransposition events in the human factor IX gene , 2001, Human mutation.
[124] A. Jheon,et al. Characterization of a Novel KRAB/C2H2Zinc Finger Transcription Factor Involved in Bone Development* , 2001, The Journal of Biological Chemistry.
[125] S. Iuchi,et al. Three classes of C2H2 zinc finger proteins , 2001, Cellular and Molecular Life Sciences CMLS.
[126] C. Schumacher,et al. Identification of SCAN dimerization domains in four gene families. , 2001, Biochimica et biophysica acta.
[127] J. Friedman,et al. Targeting histone deacetylase complexes via KRAB-zinc finger proteins: the PHD and bromodomains of KAP-1 form a cooperative unit that recruits a novel isoform of the Mi-2alpha subunit of NuRD. , 2001, Genes & development.
[128] J. Mccoy,et al. Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis , 2000, Nature.
[129] R. Losson,et al. Interaction with members of the heterochromatin protein 1 (HP1) family and histone deacetylation are differentially involved in transcriptional silencing by members of the TIF1 family , 1999, The EMBO journal.
[130] R. Deberardinis,et al. Rapid amplification of a retrotransposon subfamily is evolving the mouse genome , 1998, Nature Genetics.
[131] C. Walsh,et al. Transcription of IAP endogenous retroviruses is constrained by cytosine methylation , 1998, Nature Genetics.
[132] C. Pabo,et al. High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. , 1998, Structure.
[133] D. Speicher,et al. KAP-1, a novel corepressor for the highly conserved KRAB repression domain. , 1996, Genes & development.
[134] L. Samuelson,et al. Amylase gene structures in primates: retroposon insertions and promoter evolution. , 1996, Molecular biology and evolution.
[135] B. Grondin,et al. The KRAB Zinc Finger Gene ZNF74 Encodes an RNA-binding Protein Tightly Associated with the Nuclear Matrix* , 1996, The Journal of Biological Chemistry.
[136] Yusuke Nakamura,et al. Mutation analysis in the BRCA2 gene in primary breast cancers , 1996, Nature Genetics.
[137] J. Bonventre,et al. The Krüppel-associated box-A (KRAB-A) domain of zinc finger proteins mediates transcriptional repression. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[138] M. Meisler,et al. Endogenous retroviral sequences are required for tissue-specific expression of a human salivary amylase gene. , 1992, Genes & development.
[139] J. Martial,et al. The evolutionarily conserved Krüppel-associated box domain defines a subfamily of eukaryotic multifingered proteins. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[140] J. Stavenhagen,et al. An ancient provirus has imposed androgen regulation on the adjacent mouse sex-limited protein gene , 1988, Cell.
[141] S. Antonarakis,et al. Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man , 1988, Nature.
[142] W. Doolittle,et al. Selfish genes, the phenotype paradigm and genome evolution , 1980, Nature.
[143] R. Britten,et al. Gene regulation for higher cells: a theory. , 1969, Science.
[144] B. Mcclintock. The origin and behavior of mutable loci in maize , 1950, Proceedings of the National Academy of Sciences.
[145] D. Stoppa-Lyonnet,et al. An Alu-mediated 6-kb duplication in the BRCA1 gene: a new founder mutation? , 1999, American journal of human genetics.
[146] John M. Coffin,et al. Retroviral Pathogenesis -- Retroviruses , 1997 .