Lipid transfer proteins initiate nuclear phosphoinositide signaling

The membrane-localized phosphatidylinositol (PI) 3-kinase (PI3K)/Akt pathway regulates cell growth and is aberrantly activated in cancer. Recent studies reveal a distinct nuclear PI3K/Akt pathway involving PI phosphate (PIP) kinases that bind the tumor suppressor protein p53 (wild-type and mutant) to generate nuclear p53-polyphosphoinositide (PIPn) complexes that activate Akt. In the membrane pathway, PI transfer proteins (PITPs) transport PI, the precursor of PIPns, to endomembranes to enable PIPn synthesis. In contrast, nuclear PIPn signaling relies on poorly characterized non-membranous PIPn pools. Here we show that PITPs accumulate in the non-membranous nucleoplasm in response to stress and are necessary to generate nuclear PIPn pools. Class I PITPα/β bind p53 to form p53-PIPn complexes that activate nuclear Akt in response to stress, which inhibits apoptosis. These findings demonstrate an unexpected function for PITPα/β in nuclear PIPn signaling by generating membrane-free, protein-linked PIPn pools that are modified by PIP kinases/phosphatases to regulate protein function. In brief Phosphatidylinositol transfer proteins initiate the nuclear protein-associated PIPn network in membrane-free regions.

[1]  M. Sheetz,et al.  Transcription‐independent functions of p53 in DNA repair pathway selection , 2022, BioEssays : news and reviews in molecular, cellular and developmental biology.

[2]  J. Burke,et al.  Beyond PI3Ks: targeting phosphoinositide kinases in disease , 2022, Nature Reviews Drug Discovery.

[3]  M. Oren,et al.  Drugging p53 in cancer: one protein, many targets , 2022, Nature Reviews Drug Discovery.

[4]  W. Gerwick,et al.  Hippo pathway regulation by phosphatidylinositol transfer protein and phosphoinositides , 2022, Nature Chemical Biology.

[5]  V. Haucke,et al.  Phosphoinositides as membrane organizers , 2022, Nature Reviews Molecular Cell Biology.

[6]  Wenyi Wei,et al.  DNA-PK promotes activation of the survival kinase AKT in response to DNA damage through an mTORC2-ECT2 pathway , 2022, Science Signaling.

[7]  Suyong Choi,et al.  A p53-Phosphoinositide Signalosome Regulates Nuclear Akt Activation , 2021, bioRxiv.

[8]  M. Hall,et al.  Regulation of mTORC2 Signaling , 2020, Genes.

[9]  Suyong Choi,et al.  The nuclear phosphoinositide response to stress , 2020, Cell cycle.

[10]  G. Hoxhaj,et al.  The PI3K–AKT network at the interface of oncogenic signalling and cancer metabolism , 2019, Nature Reviews Cancer.

[11]  Suyong Choi,et al.  A nuclear phosphoinositide kinase complex regulates p53 , 2019, Nature Cell Biology.

[12]  V. Bankaitis,et al.  A Golgi Lipid Signaling Pathway Controls Apical Golgi Distribution and Cell Polarity during Neurogenesis. , 2018, Developmental cell.

[13]  G. Shivashankar,et al.  DNA damage causes rapid accumulation of phosphoinositides for ATR signaling , 2017, Nature Communications.

[14]  Lewis C. Cantley,et al.  The PI3K Pathway in Human Disease , 2017, Cell.

[15]  H. Brown,et al.  Quantitative profiling of the endonuclear glycerophospholipidome of murine embryonic fibroblasts[S] , 2016, Journal of Lipid Research.

[16]  P. Hozák,et al.  Tools for visualization of phosphoinositides in the cell nucleus , 2016, Histochemistry and Cell Biology.

[17]  J. Blenis,et al.  PtdIns(3,4,5)P3-Dependent Activation of the mTORC2 Kinase Complex. , 2015, Cancer discovery.

[18]  Shirin Bahmanyar Spatial regulation of phospholipid synthesis within the nuclear envelope domain of the endoplasmic reticulum , 2015, Nucleus.

[19]  A. Deacon,et al.  The signaling phospholipid PIP3 creates a new interaction surface on the nuclear receptor SF-1 , 2014, Proceedings of the National Academy of Sciences.

[20]  K. Vousden,et al.  p53 mutations in cancer , 2013, Nature Cell Biology.

[21]  A. Martelli,et al.  The emerging multiple roles of nuclear Akt. , 2012, Biochimica et biophysica acta.

[22]  F. Liu,et al.  Proliferative and Antiapoptotic Signaling Stimulated by Nuclear-Localized PDK1 Results in Oncogenesis , 2012, Science Signaling.

[23]  Michael L. Gonzales,et al.  A PtdIns4,5P2-regulated nuclear poly(A) polymerase controls expression of select mRNAs , 2008, Nature.

[24]  S. Cockcroft,et al.  Biochemical and biological functions of class I phosphatidylinositol transfer proteins. , 2007, Biochimica et biophysica acta.

[25]  B. Vojnovic,et al.  Intramolecular and Intermolecular Interactions of Protein Kinase B Define Its Activation In Vivo , 2007, PLoS biology.

[26]  S. Mohammed,et al.  Nuclear PtdIns5P as a transducer of stress signaling: an in vivo role for PIP4Kbeta. , 2006, Molecular cell.

[27]  J. Testa,et al.  Perturbations of the AKT signaling pathway in human cancer , 2005, Oncogene.

[28]  Jonathan D. Stallings,et al.  Nuclear Translocation of Phospholipase C-δ1 Is Linked to the Cell Cycle and Nuclear Phosphatidylinositol 4,5-Bisphosphate* , 2005, Journal of Biological Chemistry.

[29]  Sylvain V Costes,et al.  Automatic and quantitative measurement of protein-protein colocalization in live cells. , 2004, Biophysical journal.

[30]  J. Murray-Rust,et al.  Structure-function analysis of human [corrected] phosphatidylinositol transfer protein alpha bound to phosphatidylinositol. , 2004, Structure.

[31]  E. Sausville,et al.  Perifosine, a novel alkylphospholipid, inhibits protein kinase B activation. , 2003, Molecular cancer therapeutics.

[32]  Y. Ahn,et al.  Nuclear Targeting of Akt Enhances Kinase Activity and Survival of Cardiomyocytes , 2003, Circulation research.

[33]  A. Postle,et al.  Highly Saturated Endonuclear Phosphatidylcholine Is Synthesizedin Situ and Colocated with CDP-choline Pathway Enzymes* , 2001, The Journal of Biological Chemistry.

[34]  Toshinori Yoshida,et al.  Evidence That a Phosphatidylinositol 3,4,5-Trisphosphate-binding Protein Can Function in Nucleus* , 1999, The Journal of Biological Chemistry.

[35]  P. Cohen,et al.  Role of phosphatidylinositol 3,4,5-trisphosphate in regulating the activity and localization of 3-phosphoinositide-dependent protein kinase-1. , 1999, The Biochemical journal.

[36]  R. Anderson,et al.  Phosphoinositide signaling pathways in nuclei are associated with nuclear speckles containing pre-mRNA processing factors. , 1998, Molecular biology of the cell.

[37]  V. Bankaitis,et al.  Mutant rat phosphatidylinositol/phosphatidylcholine transfer proteins specifically defective in phosphatidylinositol transfer: implications for the regulation of phospholipid transfer activity. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[38]  C. Kent,et al.  Nuclear localization of soluble CTP:phosphocholine cytidylyltransferase. , 1993, The Journal of biological chemistry.

[39]  L. Cocco,et al.  Synthesis of polyphosphoinositides in nuclei of Friend cells. Evidence for polyphosphoinositide metabolism inside the nucleus which changes with cell differentiation. , 1987, The Biochemical journal.

[40]  V. Cryns,et al.  Assessing In Situ Phosphoinositide-Protein Interactions Through Fluorescence Proximity Ligation Assay in Cultured Cells. , 2021, Methods in molecular biology.

[41]  S. Cockcroft,et al.  Phosphatidylinositol synthesis at the endoplasmic reticulum. , 2019, Biochimica et biophysica acta. Molecular and cell biology of lipids.

[42]  Suzanne Naimi NAVIGATING the network , 2011 .

[43]  C. A. Barlow,et al.  Nuclear phosphoinositides: a signaling enigma wrapped in a compartmental conundrum. , 2010, Trends in cell biology.