An Efficient Approach to Merging Paired-End Reads and Incorporation of Uncertainties
暂无分享,去创建一个
Jiajie Zhang | Alexandros Stamatakis | Tomás Flouri | Lucas Czech | Kassian Kobert | A. Stamatakis | Lucas Czech | T. Flouri | Jiajie Zhang | K. Kobert | Kassian Kobert
[1] S. B. Needleman,et al. A general method applicable to the search for similarities in the amino acid sequence of two proteins. , 1970, Journal of molecular biology.
[2] Richard W. Hamming,et al. Error detecting and error correcting codes , 1950 .
[3] O. Gotoh. An improved algorithm for matching biological sequences. , 1982, Journal of molecular biology.
[4] Konrad H. Paszkiewicz,et al. De novo assembly of short sequence reads , 2010, Briefings Bioinform..
[5] Robert C. Edgar,et al. Error filtering, pair assembly and error correction for next-generation sequencing reads , 2015, Bioinform..
[6] Steven Salzberg,et al. BIOINFORMATICS ORIGINAL PAPER , 2004 .
[7] E. Mardis. Next-generation DNA sequencing methods. , 2008, Annual review of genomics and human genetics.
[8] Jiajie Zhang,et al. PEAR: a fast and accurate Illumina Paired-End reAd mergeR , 2013, Bioinform..
[9] R. Wilson,et al. The Next-Generation Sequencing Revolution and Its Impact on Genomics , 2013, Cell.
[10] Ben Nichols,et al. Distributed under Creative Commons Cc-by 4.0 Vsearch: a Versatile Open Source Tool for Metagenomics , 2022 .
[11] Vladimir I. Levenshtein,et al. Binary codes capable of correcting deletions, insertions, and reversals , 1965 .
[12] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[13] P Green,et al. Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.
[14] M S Waterman,et al. Identification of common molecular subsequences. , 1981, Journal of molecular biology.
[15] Margaret C. Linak,et al. Sequence-specific error profile of Illumina sequencers , 2011, Nucleic acids research.
[16] Torbjørn Rognes,et al. Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors , 2000, Bioinform..
[17] Daniel G. Brown,et al. PANDAseq: paired-end assembler for illumina sequences , 2012, BMC Bioinformatics.
[18] S F Altschul,et al. Local alignment statistics. , 1996, Methods in enzymology.
[19] H. Swerdlow,et al. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers , 2012, BMC Genomics.