Genes, Regulation, Evolution
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[1] B. Birren,et al. Sequencing and comparison of yeast species to identify genes and regulatory elements , 2003, Nature.
[2] I. Simon,et al. Program-Specific Distribution of a Transcription Factor Dependent on Partner Transcription Factor and MAPK Signaling , 2003, Cell.
[3] S. Salzberg,et al. The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria , 2003, Nature.
[4] E. Mauceli,et al. The genome sequence of the filamentous fungus Neurospora crassa , 2003, Nature.
[5] Amber L. Mosley,et al. Glucose-mediated Phosphorylation Converts the Transcription Factor Rgt1 from a Repressor to an Activator* , 2003, The Journal of Biological Chemistry.
[6] E. Mauceli,et al. Whole-genome sequence assembly for mammalian genomes: Arachne 2. , 2003, Genome research.
[7] P. Dessen,et al. Comparative Genomics Identifies the Genetic Islands That Distinguish Neisseria meningitidis, the Agent of Cerebrospinal Meningitis, from Other Neisseria Species , 2002, Infection and Immunity.
[8] David Botstein,et al. Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[9] Nicola J. Rinaldi,et al. Transcriptional Regulatory Networks in Saccharomyces cerevisiae , 2002, Science.
[10] M. Eisen,et al. Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering , 2002, Genome Biology.
[11] Jonathan E. Allen,et al. Genome sequence of the human malaria parasite Plasmodium falciparum , 2002, Nature.
[12] Jonathan E. Allen,et al. Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii , 2002, Nature.
[13] L. Hurst. The Ka/Ks ratio: diagnosing the form of sequence evolution. , 2002, Trends in genetics : TIG.
[14] Tyson A. Clark,et al. Genomewide Analysis of mRNA Processing in Yeast Using Splicing-Specific Microarrays , 2002, Science.
[15] M. Blanchette,et al. Discovery of regulatory elements by a computational method for phylogenetic footprinting. , 2002, Genome research.
[16] Pierre Baldi,et al. Distribution patterns of over-represented k-mers in non-coding yeast DNA , 2002, Bioinform..
[17] M. Gerstein,et al. A question of size: the eukaryotic proteome and the problems in defining it. , 2002, Nucleic acids research.
[18] A. Burt,et al. Adaptation for horizontal transfer in a homing endonuclease. , 2002, Molecular biology and evolution.
[19] J. Fassler,et al. Phylogenetic footprinting reveals multiple regulatory elements involved in control of the meiotic recombination gene, REC102 , 2002, Yeast.
[20] P. Bork,et al. Functional organization of the yeast proteome by systematic analysis of protein complexes , 2002, Nature.
[21] Kara Dolinski,et al. Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO) , 2002, Nucleic Acids Res..
[22] B. Berger,et al. ARACHNE: a whole-genome shotgun assembler. , 2002, Genome research.
[23] M. Machida,et al. Deletion analysis of the enolase gene (enoA) promoter from the filamentous fungus Aspergillus oryzae , 2001, Current Genetics.
[24] B. Dujon,et al. Evolution of gene order in the genomes of two related yeast species. , 2001, Genome research.
[25] Nicola J. Rinaldi,et al. Serial Regulation of Transcriptional Regulators in the Yeast Cell Cycle , 2001, Cell.
[26] T. Graves,et al. Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis. , 2001, Genome research.
[27] M. Tompa. Identifying functional elements by comparative DNA sequence analysis. , 2001, Genome research.
[28] Mathieu Blanchette,et al. Algorithms for phylogenetic footprinting , 2001, RECOMB.
[29] L. Pennacchio,et al. Genomic strategies to identify mammalian regulatory sequences , 2001, Nature Reviews Genetics.
[30] J. Liu,et al. Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes. , 2001, Nucleic acids research.
[31] Douglas L. Brutlag,et al. BioProspector: Discovering Conserved DNA Motifs in Upstream Regulatory Regions of Co-Expressed Genes , 2000, Pacific Symposium on Biocomputing.
[32] Michael Y. Galperin,et al. The COG database: new developments in phylogenetic classification of proteins from complete genomes , 2001, Nucleic Acids Res..
[33] B. Dujon,et al. Genomic Exploration of the Hemiascomycetous Yeasts: 4. The genome of Saccharomyces cerevisiae revisited , 2000, FEBS letters.
[34] M. Aigle,et al. Genomic Exploration of the Hemiascomycetous Yeasts: 5. Saccharomyces bayanus var. uvarum , 2000, FEBS letters.
[35] W Miller,et al. Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi. , 2000, Nucleic acids research.
[36] A. Vershon,et al. The pachytene checkpoint in Saccharomyces cerevisiae requires the Sum1 transcriptional repressor , 2000, The EMBO journal.
[37] H. True,et al. A yeast prion provides a mechanism for genetic variation and phenotypic diversity , 2000, Nature.
[38] G. Church,et al. Conservation of DNA regulatory motifs and discovery of new motifs in microbial genomes. , 2000, Genome research.
[39] S. Oliver,et al. Chromosomal evolution in Saccharomyces , 2000, Nature.
[40] Jill P. Mesirov,et al. Human and mouse gene structure: comparative analysis and application to exon prediction , 2000, RECOMB '00.
[41] W. Miller,et al. Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. , 2000, Science.
[42] J. J. B. Anderson,et al. Computational identification of cis-acting elements affecting post-transcriptional control of gene expression in Saccharomyces cerevisiae. , 2000, Nucleic acids research.
[43] Stephen M. Mount,et al. The genome sequence of Drosophila melanogaster. , 2000, Science.
[44] G. Church,et al. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. , 2000, Journal of molecular biology.
[45] E. Koonin,et al. Prediction of transcription regulatory sites in Archaea by a comparative genomic approach. , 2000, Nucleic acids research.
[46] Gary D. Stormo,et al. DNA binding sites: representation and discovery , 2000, Bioinform..
[47] S. Cebrat,et al. Total number of coding open reading frames in the yeast genome , 1999, Yeast.
[48] G. Church,et al. Systematic determination of genetic network architecture , 1999, Nature Genetics.
[49] Michael Q. Zhang,et al. SCPD: a promoter database of the yeast Saccharomyces cerevisiae , 1999, Bioinform..
[50] Michael Q. Zhang. Promoter Analysis of Co-regulated Genes in the Yeast Genome , 1999, Comput. Chem..
[51] Benjamin L. King,et al. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori , 1999, Nature.
[52] Dmitrij Frishman,et al. MIPS: a database for genomes and protein sequences , 1999, Nucleic Acids Res..
[53] J. Haber. Mating-type gene switching in Saccharomyces cerevisiae. , 2015, Annual review of genetics.
[54] D. Botstein,et al. The transcriptional program of sporulation in budding yeast. , 1998, Science.
[55] G. Church,et al. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation , 1998, Nature Biotechnology.
[56] K. H. Wolfe,et al. Evolution of gene order and chromosome number in Saccharomyces, Kluyveromyces and related fungi , 1998, Yeast.
[57] D. Lipman,et al. A genomic perspective on protein families. , 1997, Science.
[58] William Noble Grundy,et al. Meta-MEME: motif-based hidden Markov models of protein families , 1997, Comput. Appl. Biosci..
[59] K. H. Wolfe,et al. Molecular evidence for an ancient duplication of the entire yeast genome , 1997, Nature.
[60] R. Gibbs,et al. Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains. , 1997, Genome research.
[61] Wei Zhou,et al. Characterization of the Yeast Transcriptome , 1997, Cell.
[62] B. Barrell,et al. Life with 6000 Genes , 1996, Science.
[63] W. Fitch. Uses for evolutionary trees. , 1995, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[64] M. Rey-Cuillé,et al. Nucleotide sequence of the HIV-2 EHO genome, a divergent HIV-2 isolate. , 1995, AIDS Research and Human Retroviruses.
[65] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[66] C. Sensen,et al. Complete DNA sequence of yeast chromosome XI , 1994, Nature.
[67] Charles Elkan,et al. Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer , 1994, ISMB.
[68] Jun S. Liu,et al. Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. , 1993, Science.
[69] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[70] P. Sharp,et al. The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications. , 1987, Nucleic acids research.
[71] M. Ptashne,et al. Separation of DNA binding from the transcription-activating function of a eukaryotic regulatory protein. , 1986, Science.
[72] W. Fitch. Distinguishing homologous from analogous proteins. , 1970, Systematic zoology.