KSRP specifies monocytic and granulocytic differentiation through regulating miR-129 biogenesis and RUNX1 expression

[1]  Gideon Rechavi,et al.  RNA modifications: what have we learned and where are we headed? , 2016, Nature Reviews Genetics.

[2]  Fátima Sánchez-Cabo,et al.  ATtRACT—a database of RNA-binding proteins and associated motifs , 2016, Database J. Biol. Databases Curation.

[3]  Sol Katzman,et al.  RNA-binding protein IGF2BP3 targeting of oncogenic transcripts promotes hematopoietic progenitor proliferation. , 2016, The Journal of clinical investigation.

[4]  T. Suda,et al.  RUNX1 haploinsufficiency results in granulocyte colony-stimulating factor hypersensitivity , 2016, Blood Cancer Journal.

[5]  Chon-Kit Kenneth Chan,et al.  Analysis of RNA-Seq Data Using TopHat and Cufflinks. , 2016, Methods in molecular biology.

[6]  Yuan Li,et al.  EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments , 2015, Bioinform..

[7]  C. Greene.  MicroRNAs and Other Non-Coding RNAs in Inflammation , 2015 .

[8]  E. Ballestar,et al.  Epigenetic control of myeloid cell differentiation, identity and function , 2014, Nature Reviews Immunology.

[9]  S. Gerstberger,et al.  A census of human RNA-binding proteins , 2014, Nature Reviews Genetics.

[10]  A. Ramos,et al.  KSRP controls pleiotropic cellular functions. , 2014, Seminars in cell & developmental biology.

[11]  Robert Blelloch,et al.  Regulation of pluripotency by RNA binding proteins. , 2014, Cell stem cell.

[12]  S. Tóth,et al.  Myeloid-Derived microRNAs, miR-223, miR27a, and miR-652, Are Dominant Players in Myeloid Regulation , 2014, BioMed research international.

[13]  E. Vigorito,et al.  Noncoding RNA and its associated proteins as regulatory elements of the immune system , 2014, Nature Immunology.

[14]  Jane Y. Wu,et al.  RNA-binding proteins in neurological diseases , 2014, Science China Life Sciences.

[15]  Wei Shi,et al.  featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..

[16]  S. Janga,et al.  Dissecting the expression landscape of RNA-binding proteins in human cancers , 2014, Genome Biology.

[17]  J. Twiss,et al.  KSRP Modulation of GAP-43 mRNA Stability Restricts Axonal Outgrowth in Embryonic Hippocampal Neurons , 2013, PloS one.

[18]  R. Humeniuk,et al.  Concise Review: Erythroid Versus Myeloid Lineage Commitment: Regulating the Master Regulators , 2013, Stem cells.

[19]  Ming C. Hammond,et al.  Roquin Promotes Constitutive mRNA Decay via a Conserved Class of Stem-Loop Recognition Motifs , 2013, Cell.

[20]  Bernd Fischer,et al.  RNA-binding proteins in Mendelian disease. , 2013, Trends in genetics : TIG.

[21]  E. Birgitte Lane,et al.  ‘See-saw’ expression of microRNA-198 and FSTL1 from a single transcript in wound healing , 2013, Nature.

[22]  David P. Bartel,et al.  Beyond Secondary Structure: Primary-Sequence Determinants License Pri-miRNA Hairpins for Processing , 2013, Cell.

[23]  S. Ciafrè,et al.  A complex network of interactions and reciprocal regulations in cancer , 2013 .

[24]  Cole Trapnell,et al.  TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.

[25]  Bronwen L. Aken,et al.  GENCODE: The reference human genome annotation for The ENCODE Project , 2012, Genome research.

[26]  Jia Yu,et al.  MicroRNA-29a and microRNA-142-3p are regulators of myeloid differentiation and acute myeloid leukemia. , 2012, Blood.

[27]  N. Speck,et al.  Runx1 deletion or dominant inhibition reduces Cebpa transcription via conserved promoter and distal enhancer sites to favor monopoiesis over granulopoiesis. , 2012, Blood.

[28]  Xian-Ming Chen,et al.  miR-27b Targets KSRP to Coordinate TLR4-Mediated Epithelial Defense against Cryptosporidium parvum Infection , 2012, PLoS pathogens.

[29]  J. Norton,et al.  AU-rich RNA binding proteins in hematopoiesis and leukemogenesis. , 2011, Blood.

[30]  M. Luo,et al.  Posttranscriptional Control of Type I Interferon Genes by KSRP in the Innate Immune Response against Viral Infection , 2011, Molecular and Cellular Biology.

[31]  Kate B. Cook,et al.  RBPDB: a database of RNA-binding specificities , 2010, Nucleic Acids Res..

[32]  C. Gemelli,et al.  ZFP36L1 Negatively Regulates Erythroid Differentiation of CD34+ Hematopoietic Stem Cells by Interfering with the Stat5b Pathway , 2010, Molecular biology of the cell.

[33]  A. Ramos,et al.  The role of KSRP in mRNA decay and microRNA precursor maturation , 2010, Wiley interdisciplinary reviews. RNA.

[34]  Huilin Zhou,et al.  ALS-associated mutations in TDP-43 increase its stability and promote TDP-43 complexes with FUS/TLS , 2010, Proceedings of the National Academy of Sciences.

[35]  C. Malbon,et al.  Dishevelled-KSRP complex regulates Wnt signaling through post-transcriptional stabilization of β-catenin mRNA , 2010, Journal of Cell Science.

[36]  Michael T. McManus,et al.  LPS induces KH‐type splicing regulatory protein‐dependent processing of microRNA‐155 precursors in macrophages , 2009, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[37]  Kevin J Luebke,et al.  Faculty Opinions recommendation of The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs. , 2009 .

[38]  A. Iwama,et al.  MicroRNA‐27 enhances differentiation of myeloblasts into granulocytes by post‐transcriptionally downregulating Runx1 , 2009, British journal of haematology.

[39]  T. Glisovic,et al.  RNA‐binding proteins and post‐transcriptional gene regulation , 2008, FEBS letters.

[40]  Y. Okuno,et al.  PU.1 is a major downstream target of AML1 (RUNX1) in adult mouse hematopoiesis , 2008, Nature Genetics.

[41]  A. Friedman.  Transcriptional control of granulocyte and monocyte development , 2007, Oncogene.

[42]  C. Sander,et al.  A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing , 2007, Cell.

[43]  Carlo M. Croce,et al.  MicroRNAs 17-5p–20a–106a control monocytopoiesis through AML1 targeting and M-CSF receptor upregulation , 2007, Nature Cell Biology.

[44]  A. Ramos,et al.  The structure of the C-terminal KH domains of KSRP reveals a noncanonical motif important for mRNA degradation. , 2007, Structure.

[45]  S. K. Zaidi,et al.  Point mutation in AML1 disrupts subnuclear targeting, prevents myeloid differentiation, and effects a transformation-like phenotype. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[46]  V. Ambros.  The functions of animal microRNAs , 2004, Nature.

[47]  M. Karin,et al.  A KH domain RNA binding protein, KSRP, promotes ARE-directed mRNA turnover by recruiting the degradation machinery. , 2004, Molecular cell.

[48]  Scott Cameron,et al.  Intrinsic requirement for zinc finger transcription factor Gfi-1 in neutrophil differentiation. , 2003, Immunity.

[49]  J. Cowland,et al.  Regulation of human neutrophil granule protein expression. , 2001, Current opinion in hematology.

[50]  N. Kamada,et al.  AML1-MTG8 leukemic protein induces the expression of granulocyte colony-stimulating factor (G-CSF) receptor through the up-regulation of CCAAT/enhancer binding protein epsilon. , 2000, Blood.

[51]  T. Graf,et al.  PU.1 induces myeloid lineage commitment in multipotent hematopoietic progenitors. , 1998, Genes & development.

[52]  D L Black,et al.  A new regulatory protein, KSRP, mediates exon inclusion through an intronic splicing enhancer. , 1997, Genes & development.

[53]  D. Tenen,et al.  CCAAT Enhancer-Binding Protein ( C / EBP ) and AML 1 ( CBF a 2 ) Synergistically Activate the Macrophage Colony-Stimulating Factor Receptor Promoter , 1995 .

[54]  J. Downing,et al.  AML1, the Target of Multiple Chromosomal Translocations in Human Leukemia, Is Essential for Normal Fetal Liver Hematopoiesis , 1996, Cell.

[55]  C. Kimmel,et al.  Stages of embryonic development of the zebrafish , 1995, Developmental dynamics : an official publication of the American Association of Anatomists.

[56]  I. Bar-Am,et al.  AML1, AML2, and AML3, the human members of the runt domain gene-family: cDNA structure, expression, and chromosomal localization. , 1994, Genomics.