Automated classification of dolphin echolocation click types from the Gulf of Mexico

Delphinids produce large numbers of short duration, broadband echolocation clicks which may be useful for species classification in passive acoustic monitoring efforts. A challenge in echolocation click classification is to overcome the many sources of variability to recognize underlying patterns across many detections. An automated unsupervised network-based classification method was developed to simulate the approach a human analyst uses when categorizing click types: Clusters of similar clicks were identified by incorporating multiple click characteristics (spectral shape and inter-click interval distributions) to distinguish within-type from between-type variation, and identify distinct, persistent click types. Once click types were established, an algorithm for classifying novel detections using existing clusters was tested. The automated classification method was applied to a dataset of 52 million clicks detected across five monitoring sites over two years in the Gulf of Mexico (GOM). Seven distinct click types were identified, one of which is known to be associated with an acoustically identifiable delphinid (Risso’s dolphin) and six of which are not yet identified. All types occurred at multiple monitoring locations, but the relative occurrence of types varied, particularly between continental shelf and slope locations. Automatically-identified click types from autonomous seafloor recorders without verifiable species identification were compared with clicks detected on sea-surface towed hydrophone arrays in the presence of visually identified delphinid species. These comparisons suggest potential species identities for the animals producing some echolocation click types. The network-based classification method presented here is effective for rapid, unsupervised delphinid click classification across large datasets in which the click types may not be known a priori.

[1]  R. Payne,et al.  Echolocation clicks of two free-ranging, oceanic delphinids with different food preferences: false killer whales Pseudorca crassidens and Risso's dolphins Grampus griseus , 2004, Journal of Experimental Biology.

[2]  Whitlow W. L. Au,et al.  The Sonar of Dolphins , 1993, Springer New York.

[3]  Len Thomas,et al.  Delphinid echolocation click detection probability on near-seafloor sensors. , 2016, The Journal of the Acoustical Society of America.

[4]  Kaitlin E. Frasier,et al.  Density estimation of delphinids using passive acoustics: A case study in the Gulf of Mexico , 2015 .

[5]  Fang Zhou,et al.  Simplification of Networks by Edge Pruning , 2012, Bisociative Knowledge Discovery.

[6]  G. Waring,et al.  U.S. Atlantic and Gulf of Mexico marine mammal stock assessments--2002 , 1995 .

[7]  Steven Skiena,et al.  Integrating microarray data by consensus clustering , 2003, Proceedings. 15th IEEE International Conference on Tools with Artificial Intelligence.

[8]  Laura N. Kloepper,et al.  Active echolocation beam focusing in the false killer whale, Pseudorca crassidens , 2012, Journal of Experimental Biology.

[9]  Mark P. Johnson,et al.  Foraging Blainville's beaked whales (Mesoplodon densirostris) produce distinct click types matched to different phases of echolocation , 2006, Journal of Experimental Biology.

[10]  Alexander Bahr,et al.  Acoustic behaviour of echolocating porpoises during prey capture , 2009, Journal of Experimental Biology.

[11]  Ana L. N. Fred,et al.  Combining multiple clusterings using evidence accumulation , 2005, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[12]  R. Payne,et al.  Source parameter estimates of echolocation clicks from wild pygmy killer whales (Feresa attenuata). , 2004, The Journal of the Acoustical Society of America.

[13]  C. Amante,et al.  ETOPO1 arc-minute global relief model : procedures, data sources and analysis , 2009 .

[14]  E. Kay,et al.  Introductory Graph Theory , 1978 .

[15]  M E J Newman,et al.  Modularity and community structure in networks. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[16]  W. Au,et al.  Dolphin biosonar signals measured at extreme off-axis angles: insights to sound propagation in the head. , 2011, The Journal of the Acoustical Society of America.

[17]  Len Thomas,et al.  Spatio-temporal variation in click production rates of beaked whales: Implications for passive acoustic density estimation. , 2017, The Journal of the Acoustical Society of America.

[18]  Peter Simard,et al.  Depth dependent variation of the echolocation pulse rate of bottlenose dolphins (Tursiops truncatus). , 2010, The Journal of the Acoustical Society of America.

[19]  Holger Klinck,et al.  Classification of echolocation clicks from odontocetes in the Southern California Bight. , 2011, The Journal of the Acoustical Society of America.

[20]  Marie A. Roch,et al.  False killer whale and short-finned pilot whale acoustic identification , 2015 .

[21]  Jason J. Roberts,et al.  Habitat-based cetacean density models for the U.S. Atlantic and Gulf of Mexico , 2016, Scientific Reports.

[22]  Christian Lydersen,et al.  Monitoring white whales (Delphinapterus leucas) with echolocation loggers , 2013, Polar Biology.

[23]  Simone Baumann-Pickering,et al.  Species-specific beaked whale echolocation signals. , 2013, The Journal of the Acoustical Society of America.

[24]  Marie A Roch,et al.  Classification of Risso's and Pacific white-sided dolphins using spectral properties of echolocation clicks. , 2008, The Journal of the Acoustical Society of America.

[25]  P. Madsen,et al.  Biosonar adjustments to target range of echolocating bottlenose dolphins (Tursiops sp.) in the wild , 2009, Journal of Experimental Biology.

[26]  Jason Mulsow,et al.  Nearfield and farfield measurements of dolphin echolocation beam patterns: No evidence of focusing. , 2016, The Journal of the Acoustical Society of America.

[27]  S.M. Wiggins,et al.  High-frequency Acoustic Recording Package (HARP) for broad-band, long-term marine mammal monitoring , 2007, 2007 Symposium on Underwater Technology and Workshop on Scientific Use of Submarine Cables and Related Technologies.

[28]  Paul M Baggenstoss,et al.  An algorithm for the localization of multiple interfering sperm whales using multi-sensor time difference of arrival. , 2011, The Journal of the Acoustical Society of America.

[29]  John A Hildebrand,et al.  Three-dimensional tracking of Cuvier's beaked whales' echolocation sounds using nested hydrophone arrays. , 2015, The Journal of the Acoustical Society of America.

[30]  Xin-She Yang,et al.  Introduction to Algorithms , 2021, Nature-Inspired Optimization Algorithms.

[31]  Marie A. Roch,et al.  Automated identification and clustering of subunits within delphinid vocalizations , 2016 .

[32]  Christian Biemann,et al.  Chinese Whispers - an Efficient Graph Clustering Algorithm and its Application to Natural Language Processing Problems , 2006 .

[33]  L. Miller,et al.  Echolocation by two foraging harbour porpoises (Phocoena phocoena) , 2009, Journal of Experimental Biology.

[34]  Melissa S. Soldevilla,et al.  US Atlantic and Gulf of Mexico marine mammal stock assessments - 2015 , 2016 .

[35]  Jason Mulsow,et al.  High-resolution measurement of a bottlenose dolphin's (Tursiops truncatus) biosonar transmission beam pattern in the horizontal plane. , 2014, The Journal of the Acoustical Society of America.

[36]  Michael Ladegaard,et al.  Amazon river dolphins (Inia geoffrensis) use a high-frequency short-range biosonar , 2015, Journal of Experimental Biology.

[37]  W. Au,et al.  Automatic gain control in the echolocation system of dolphins , 2003, Nature.

[38]  A. Vespignani,et al.  The architecture of complex weighted networks. , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[39]  Andrew J. Read,et al.  Field assessment of C-POD performance in detecting echolocation click trains of bottlenose dolphins (Tursiops truncatus) , 2015 .

[40]  Maria L. Rizzo,et al.  Measuring and testing dependence by correlation of distances , 2007, 0803.4101.

[41]  P. Moore,et al.  Beamwidth control and angular target detection in an echolocating bottlenose dolphin (Tursiops truncatus). , 2008, The Journal of the Acoustical Society of America.

[42]  Hans-Ulrich Schnitzler,et al.  Discriminating features of echolocation clicks of melon-headed whales (Peponocephala electra), bottlenose dolphins (Tursiops truncatus), and Gray's spinner dolphins (Stenella longirostris longirostris). , 2010, The Journal of the Acoustical Society of America.

[43]  P W Moore,et al.  Echolocation transmitting beam of the Atlantic bottlenose dolphin. , 1986, The Journal of the Acoustical Society of America.

[44]  Len Thomas,et al.  Passive acoustic monitoring of beaked whale densities in the Gulf of Mexico , 2015, Scientific Reports.

[45]  Thomas H. Cormen,et al.  Introduction to algorithms [2nd ed.] , 2001 .