Metabolomic-based identification of clusters that reflect dietary patterns.

SCOPE Classification of subjects into dietary patterns generally relies on self-reporting dietary data which are prone to error. The aim of the present study was to develop a model for objective classification of people into dietary patterns based on metabolomic data. METHODS AND RESULTS Dietary and urinary metabolomic data from the National Adult Nutrition Survey (NANS) was used in the analysis (n = 567). Two-step cluster analysis was applied to the urinary data to identify clusters. The subsequent model was used in an independent cohort to classify people into dietary patterns. Two distinct dietary patterns were identified. Cluster 1 was characterized by significantly higher intakes of breakfast cereals, low fat and skimmed milks, potatoes, fruit, fish and fish dishes (p < 0.05) representing a "healthy" cluster. Cluster 2 had significantly higher intakes of chips/processed potatoes, meat products, savory snacks and high-energy beverages (p < 0.05) representing an "unhealthy cluster". Classification was supported by significant differences in nutrient status (p < 0.05). Validation in an independent group revealed that 94% of subjects were correctly classified. CONCLUSION The model developed was capable of classifying individuals into dietary patterns based on metabolomics data. Future applications of this approach could be developed for rapid and objective assignment of subjects into dietary patterns.

[1]  R. Levy,et al.  Estimation of the concentration of low-density lipoprotein cholesterol in plasma, without use of the preparative ultracentrifuge. , 1972, Clinical chemistry.

[2]  G. W. Milligan,et al.  A study of standardization of variables in cluster analysis , 1988 .

[3]  P. Guenther,et al.  Mean proportion and population proportion: two answers to the same question? , 1989, Journal of the American Dietetic Association.

[4]  S. Graham,et al.  Patterns in food use and their associations with nutrient intakes. , 1990, The American journal of clinical nutrition.

[5]  D Kromhout,et al.  Dietary patterns and cardiovascular risk factors in elderly men: the Zutphen Elderly Study. , 1995, International journal of epidemiology.

[6]  G. Bray,et al.  A dietary approach to prevent hypertension: A review of the dietary approaches to stop hypertension (DASH) study , 1999, Clinical cardiology.

[7]  Orton,et al.  EFFECTS ON BLOOD PRESSURE OF REDUCED DIETARY SODIUM AND THE DIETARY APPROACHES TO STOP HYPERTENSION ( DASH ) DIET , 2000 .

[8]  M. Gerber The comprehensive approach to diet: a critical review. , 2001, The Journal of nutrition.

[9]  J. Wang,et al.  Simultaneous determination of artificial sweeteners, preservatives, caffeine, theobromine and theophylline in food and pharmaceutical preparations by ion chromatography. , 2001, Journal of chromatography. A.

[10]  P. Robson,et al.  The North/South Ireland Food Consumption Survey: survey design and methodology , 2001, Public Health Nutrition.

[11]  N Rifai,et al.  Association between dietary patterns and plasma biomarkers of obesity and cardiovascular disease risk. , 2001, The American journal of clinical nutrition.

[12]  K. Tucker,et al.  Are dietary patterns useful for understanding the role of diet in chronic disease? , 2001, The American journal of clinical nutrition.

[13]  S. Wold,et al.  Orthogonal projections to latent structures (O‐PLS) , 2002 .

[14]  Raymond J Carroll,et al.  Bias in dietary-report instruments and its implications for nutritional epidemiology , 2002, Public Health Nutrition.

[15]  S. Bingham,et al.  Biomarkers in nutritional epidemiology , 2002, Public Health Nutrition.

[16]  Márcia C C Veloso,et al.  Simultaneous determination of caffeine, theobromine, and theophylline by high-performance liquid chromatography. , 2002, Journal of chromatographic science.

[17]  Margaret A. Nemeth,et al.  Multi- and Megavariate Data Analysis , 2003, Technometrics.

[18]  Tina Costacou,et al.  Adherence to a Mediterranean diet and survival in a Greek population. , 2003, The New England journal of medicine.

[19]  N. Potischman Biologic and methodologic issues for nutritional biomarkers. , 2003, The Journal of nutrition.

[20]  Walter C Willett,et al.  Dietary patterns, meat intake, and the risk of type 2 diabetes in women. , 2004, Archives of internal medicine.

[21]  I. Perry,et al.  Dietary patterns in middle-aged Irish men and women defined by cluster analysis , 2004, Public Health Nutrition.

[22]  J. Manson,et al.  Major dietary patterns are related to plasma concentrations of markers of inflammation and endothelial dysfunction. , 2004, The American journal of clinical nutrition.

[23]  Heiner Boeing,et al.  Application of a new statistical method to derive dietary patterns in nutritional epidemiology. , 2004, American journal of epidemiology.

[24]  A. Rietveld,et al.  Consumption of both black tea and green tea results in an increase in the excretion of hippuric acid into urine. , 2005, The American journal of clinical nutrition.

[25]  C. Loria,et al.  Dietary fat intake and risk of coronary heart disease: the Strong Heart Study. , 2006, The American journal of clinical nutrition.

[26]  D. Giugliano,et al.  Beneficial effects of a Dietary Approaches to Stop Hypertension eating plan on features of the metabolic syndrome. , 2006, Diabetes care.

[27]  D. Higgins,et al.  Influence of acute phytochemical intake on human urinary metabolomic profiles. , 2007, The American journal of clinical nutrition.

[28]  W. Atkinson,et al.  Effects of orange juice and proline betaine on glycine betaine and homocysteine in healthy male subjects , 2007, European journal of nutrition.

[29]  M. Schulze,et al.  A priori-defined dietary patterns and markers of cardiovascular disease risk in the Multi-Ethnic Study of Atherosclerosis (MESA). , 2008, The American journal of clinical nutrition.

[30]  Michael J. Pencina,et al.  Vitamin D Deficiency and Risk of Cardiovascular Disease , 2008, Circulation.

[31]  Y. Matahira,et al.  Intestinal absorption and blood clearance of L-histidine-related compounds after ingestion of anserine in humans and comparison to anserine-containing diets. , 2009, Journal of agricultural and food chemistry.

[32]  Victor Kipnis,et al.  Can we use biomarkers in combination with self-reports to strengthen the analysis of nutritional epidemiologic studies? , 2010, Epidemiologic perspectives & innovations : EP+I.

[33]  Henrik J. Andersen,et al.  The Serum Metabolite Response to Diet Intervention with Probiotic Acidified Milk in Irritable Bowel Syndrome Patients Is Indistinguishable from that of Non-Probiotic Acidified Milk by 1H NMR-Based Metabonomic Analysis , 2010, Nutrients.

[34]  Jeremiah Stamler,et al.  Metabolic profiling strategy for discovery of nutritional biomarkers: proline betaine as a marker of citrus consumption. , 2010, The American journal of clinical nutrition.

[35]  S. Cai,et al.  Identification of biochemical changes in lactovegetarian urine using 1H NMR spectroscopy and pattern recognition , 2010, Analytical and bioanalytical chemistry.

[36]  F. Hu,et al.  The Mediterranean and Dietary Approaches to Stop Hypertension (DASH) diets and colorectal cancer. , 2010, The American journal of clinical nutrition.

[37]  Gabi Kastenmüller,et al.  Questionnaire-based self-reported nutrition habits associate with serum metabolism as revealed by quantitative targeted metabolomics , 2011, European Journal of Epidemiology.

[38]  T. Sørensen,et al.  Chemometric strategies to assess metabonomic imprinting of food habits in epidemiological studies , 2010 .

[39]  M. Iriti,et al.  Melatonin in traditional Mediterranean diets , 2010, Journal of pineal research.

[40]  S. Brennan,et al.  Dietary patterns and breast cancer risk: a systematic review and meta-analysis. , 2010, The American journal of clinical nutrition.

[41]  R. Sinha,et al.  Urinary Biomarkers of Meat Consumption , 2011, Cancer Epidemiology, Biomarkers & Prevention.

[42]  D. Panagiotakos,et al.  The effect of Mediterranean diet on metabolic syndrome and its components: a meta-analysis of 50 studies and 534,906 individuals. , 2011, Journal of the American College of Cardiology.

[43]  F. Clavel-Chapelon,et al.  Mediterranean dietary pattern and cancer risk in the EPIC cohort , 2011, British Journal of Cancer.

[44]  A. González-Córdova,et al.  A Capillary Electrophoresis Method for the Determination of Hydroxyproline as a Collagen Content Index in Meat Products , 2012, Food Analytical Methods.

[45]  Yutaka Yasui,et al.  Exploring statistical approaches to diminish subjectivity of cluster analysis to derive dietary patterns: The Tomorrow Project. , 2011, American journal of epidemiology.

[46]  Lorraine Brennan,et al.  Dietary intake patterns are reflected in metabolomic profiles: potential role in dietary assessment studies. , 2011, The American journal of clinical nutrition.

[47]  M. Gibney,et al.  Dietary patterns in Irish adolescents: a comparison of cluster and principal component analyses , 2011, Public Health Nutrition.

[48]  Francesco Savorani,et al.  Assessment of dietary exposure related to dietary GI and fibre intake in a nutritional metabolomic study of human urine , 2011, Genes & Nutrition.

[49]  A. Clarke,et al.  'Mediterranean' dietary pattern for the primary prevention of cardiovascular disease. , 2012, The Cochrane database of systematic reviews.

[50]  T. Remer,et al.  Hippuric acid in 24-hour urine collections is a potential biomarker for fruit and vegetable consumption in healthy children and adolescents. , 2012, The Journal of nutrition.

[51]  L. Azadbakht,et al.  How dietary patterns could have a role in prevention, progression, or management of diabetes mellitus? Review on the current evidence , 2012, Journal of research in medical sciences : the official journal of Isfahan University of Medical Sciences.

[52]  Francesco Savorani,et al.  Assessment of the Effect of High or Low Protein Diet on the Human Urine Metabolome as Measured by NMR , 2012, Nutrients.

[53]  M. Gibney,et al.  Vitamin D status of Irish adults: findings from the National Adult Nutrition Survey , 2012, British Journal of Nutrition.

[54]  J. Geleijnse,et al.  Identification of biomarkers for intake of protein from meat, dairy products and grains: a controlled dietary intervention study. , 2013, The British journal of nutrition.

[55]  J. Boer,et al.  Dietary patterns derived from principal component- and k-means cluster analysis: long-term association with coronary heart disease and stroke. , 2013, Nutrition, metabolism, and cardiovascular diseases : NMCD.

[56]  V. Fulgoni,et al.  Avocado consumption is associated with better diet quality and nutrient intake, and lower metabolic syndrome risk in US adults: results from the National Health and Nutrition Examination Survey (NHANES) 2001–2008 , 2013, Nutrition Journal.

[57]  Robert Powers,et al.  Multivariate Analysis in Metabolomics. , 2012, Current Metabolomics.

[58]  M. Vohl,et al.  The metabolic signature associated with the Western dietary pattern: a cross-sectional study , 2013, Nutrition Journal.

[59]  C. la Vecchia,et al.  Dietary patterns and gastric cancer risk: a systematic review and meta-analysis. , 2013, Annals of oncology : official journal of the European Society for Medical Oncology.

[60]  M. Schulze,et al.  Variation of serum metabolites related to habitual diet: a targeted metabolomic approach in EPIC-Potsdam , 2013, European Journal of Clinical Nutrition.

[61]  George Papadakis,et al.  Comparative analysis of a-priori and a-posteriori dietary patterns using state-of-the-art classification algorithms: A case/case-control study , 2013, Artif. Intell. Medicine.

[62]  E. Rimm,et al.  The Mediterranean-style dietary pattern and mortality among men and women with cardiovascular disease. , 2014, The American journal of clinical nutrition.

[63]  Estelle Pujos-Guillot,et al.  Untargeted metabolomics as a screening tool for estimating compliance to a dietary pattern. , 2014, Journal of proteome research.

[64]  S B Heymsfield,et al.  Energy balance measurement: when something is not better than nothing , 2014, International Journal of Obesity.

[65]  R. Perera,et al.  Systemic corticosteroids for acute sinusitis. , 2011, The Cochrane database of systematic reviews.

[66]  F. Hu,et al.  Dietary patterns: from nutritional epidemiologic analysis to national guidelines. , 2015, The American journal of clinical nutrition.

[67]  M. Walsh,et al.  Use of metabotyping for the delivery of personalised nutrition. , 2015, Molecular Nutrition & Food Research.

[68]  L. Brennan,et al.  Plasma fatty acid patterns reflect dietary habits and metabolic health: A cross-sectional study. , 2016, Molecular nutrition & food research.