Phylogenetic patterns of climatic, habitat and trophic niches in a European avian assemblage

Aim The origins of ecological diversity in continental species assemblages have long intrigued biogeographers. We apply phylogenetic comparative analyses to disentangle the evolutionary patterns of ecological niches in an assemblage of European birds. We compare phylogenetic patterns in trophic, habitat and climatic niche components. Location Europe. Methods From polygon range maps and handbook data we inferred the realized climatic, habitat and trophic niches of 405 species of breeding birds in Europe. We fitted Pagel's lambda and kappa statistics, and conducted analyses of disparity through time to compare temporal patterns of ecological diversification on all niche axes together. All observed patterns were compared with expectations based on neutral (Brownian) models of niche divergence. Results In this assemblage, patterns of phylogenetic signal (lambda) suggest that related species resemble each other less in regard to their climatic and habitat niches than they do in their trophic niche. Kappa estimates show that ecological divergence does not gradually increase with divergence time, and that this punctualism is stronger in climatic niches than in habitat and trophic niches. Observed niche disparity markedly exceeds levels expected from a Brownian model of ecological diversification, thus providing no evidence for past phylogenetic niche conservatism in these multivariate niches. Levels of multivariate disparity are greatest for the climatic niche, followed by disparity of the habitat and the trophic niches. Main conclusions Phylogenetic patterns in the three niche components differ within this avian assemblage. Variation in evolutionary rates (degree of gradualism, constancy through the tree) and/or non-random macroecological sampling probably lead here to differences in the phylogenetic structure of niche components. Testing hypotheses on the origin of these patterns requires more complete phylogenetic trees of the birds, and extended ecological data on different niche components for all bird species.

[1]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[2]  Nicolas Salamin,et al.  Linking Life-History Traits, Ecology, and Niche Breadth Evolution in North American Eriogonoids (Polygonaceae) , 2013, The American Naturalist.

[3]  G. Bell.  Evolutionary rescue and the limits of adaptation , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.

[4]  W. Thuiller,et al.  Building megaphylogenies for macroecology: taking up the challenge. , 2013, Ecography.

[5]  W. Jetz,et al.  The global diversity of birds in space and time , 2012, Nature.

[6]  T. Jombart,et al.  How to measure and test phylogenetic signal , 2012 .

[7]  Gavin H. Thomas,et al.  MOTMOT: models of trait macroevolution on trees , 2012 .

[8]  Susanne A. Fritz,et al.  Climatic niche conservatism and the evolutionary dynamics in species range boundaries: global congruence across mammals and amphibians , 2011 .

[9]  Wilfried Thuiller,et al.  Consequences of climate change on the tree of life in Europe , 2011, Nature.

[10]  Walter Jetz,et al.  Phylogenetic conservatism of environmental niches in mammals , 2011, Proceedings of the Royal Society B: Biological Sciences.

[11]  W. Thuiller,et al.  Assessing rapid evolution in a changing environment. , 2010, Trends in ecology & evolution.

[12]  R. Freckleton,et al.  Phylogenetic comparative approaches for studying niche conservatism , 2010, Journal of evolutionary biology.

[13]  J. Diniz‐Filho,et al.  Hidden patterns of phylogenetic non-stationarity overwhelm comparative analyses of niche conservatism and divergence , 2010 .

[14]  John-Arvid Grytnes,et al.  Niche conservatism as an emerging principle in ecology and conservation biology. , 2010, Ecology letters.

[15]  J. D. Hoyo,et al.  Handbook of the Birds of the World , 2010 .

[16]  Kazutaka Katoh,et al.  Parallelization of the MAFFT multiple sequence alignment program , 2010, Bioinform..

[17]  Wilfried Thuiller,et al.  Defining and measuring ecological specialization , 2010 .

[18]  D. Ackerly.  Conservatism and diversification of plant functional traits: Evolutionary rates versus phylogenetic signal , 2009, Proceedings of the National Academy of Sciences.

[19]  Toni Gabaldón,et al.  trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses , 2009, Bioinform..

[20]  L. Revell,et al.  Phylogenetic Analysis of the Evolutionary Correlation Using Likelihood , 2009, Evolution; international journal of organic evolution.

[21]  J. Rougemont,et al.  A rapid bootstrap algorithm for the RAxML Web servers. , 2008, Systematic biology.

[22]  J. Losos.  Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species. , 2008, Ecology letters.

[23]  L. Revell,et al.  Phylogenetic signal, evolutionary process, and rate. , 2008, Systematic biology.

[24]  W. A. Cox,et al.  A Phylogenomic Study of Birds Reveals Their Evolutionary History , 2008, Science.

[25]  D. Lack.  Ecological Aspects of Species‐formation in Passerine Birds , 2008 .

[26]  A. Phillimore,et al.  Sympatric Speciation in Birds Is Rare: Insights from Range Data and Simulations , 2008, The American Naturalist.

[27]  Luke J. Harmon,et al.  GEIGER: investigating evolutionary radiations , 2008, Bioinform..

[28]  G. Voelker,et al.  Pliocene climatic change in insular Southeast Asia as an engine of diversification in Ficedula flycatchers , 2008 .

[29]  Rodrigo Lopez,et al.  Clustal W and Clustal X version 2.0 , 2007, Bioinform..

[30]  Anne-Béatrice Dufour,et al.  The ade4 Package: Implementing the Duality Diagram for Ecologists , 2007 .

[31]  R. Wayne,et al.  POSTGLACIAL POPULATION EXPANSION DRIVES THE EVOLUTION OF LONG-DISTANCE MIGRATION IN A SONGBIRD , 2006, Evolution; international journal of organic evolution.

[32]  J. Hancock,et al.  Ethylene-induced stomatal closure in Arabidopsis occurs via AtrbohF-mediated hydrogen peroxide synthesis. , 2006, The Plant journal : for cell and molecular biology.

[33]  Peter R. Grant,et al.  Evolution of Character Displacement in Darwin's Finches , 2006, Science.

[34]  Erik L. L. Sonnhammer,et al.  Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment , 2006, Nucleic Acids Res..

[35]  A. Phillimore,et al.  Ecology Predicts Large‐Scale Patterns of Phylogenetic Diversification in Birds , 2006, The American Naturalist.

[36]  L. Rockwood.  Introduction to population ecology , 2006 .

[37]  J. L. Parra,et al.  Very high resolution interpolated climate surfaces for global land areas , 2005 .

[38]  I. Lovette.  Glacial cycles and the tempo of avian speciation. , 2005, Trends in ecology & evolution.

[39]  M. Nishida,et al.  Phylogeographic relationships within the Mediterranean turbot inferred by mitochondrial DNA haplotype variation , 2004 .

[40]  A. Helbig,et al.  HISTORICAL DIVERSIFICATION OF MIGRATION PATTERNS IN A PASSERINE BIRD , 2004, Evolution; international journal of organic evolution.

[41]  M. Cadotte.  Ecological Niches: Linking Classical and Contemporary Approaches , 2004, Biodiversity & Conservation.

[42]  A. Peterson,et al.  Evolution of seasonal ecological niches in the Passerina buntings (Aves: Cardinalidae) , 2004, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[43]  Wilfried Thuiller,et al.  RELATING PLANT TRAITS AND SPECIES DISTRIBUTIONS ALONG BIOCLIMATIC GRADIENTS FOR 88 LEUCADENDRON TAXA , 2004 .

[44]  Robert C. Edgar,et al.  MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.

[45]  A. Helbig,et al.  Weak phylogenetic effects on ecological niches of Sylvia warblers , 2003, Journal of evolutionary biology.

[46]  J. Losos,et al.  Tempo and Mode of Evolutionary Radiation in Iguanian Lizards , 2003, Science.

[47]  N. Rosenthal,et al.  Developmental basis of evolutionary digit loss in the Australian lizard Hemiergis. , 2003, Journal of experimental zoology. Part B, Molecular and developmental evolution.

[48]  Michael J. Sanderson,et al.  R8s: Inferring Absolute Rates of Molecular Evolution, Divergence times in the Absence of a Molecular Clock , 2003, Bioinform..

[49]  M. Brändle,et al.  Dietary niche breadth for Central European birds: correlations with species-specific traits , 2002 .

[50]  S. Dolédec,et al.  NICHE SEPARATION IN COMMUNITY ANALYSIS: A NEW METHOD , 2000 .

[51]  I. Lovette,et al.  The Imprint of History on Communities of North American and Asian Warblers , 2000, The American Naturalist.

[52]  M. Pagel.  Inferring the historical patterns of biological evolution , 1999, Nature.

[53]  K. Böhning‐Gaese,et al.  Phylogenetic effects on morphological, life-history, behavioural and ecological traits of birds , 1999 .

[54]  C. Cicero,et al.  Molecular phylogeny and ecological diversification in a clade of New World songbirds (genus Vireo) , 1998, Molecular ecology.

[55]  F. Brinkman,et al.  Phylogenetic analysis. , 1998, Methods of biochemical analysis.

[56]  M. Pagel.  Inferring evolutionary processes from phylogenies , 1997 .

[57]  J. Wattel.  Handbook of Birds of the world. , 1993 .

[58]  T. Price,et al.  Evolution of ecological differences in the Old World leaf warblers , 1992, Nature.

[59]  M. Pagel,et al.  The comparative method in evolutionary biology , 1991 .

[60]  A. O. Nicholls,et al.  Measurement of the realized qualitative niche: environmental niches of five Eucalyptus species , 1990 .

[61]  P. Lundberg,et al.  The evolution of partial migration in Birds. , 1988, Trends in ecology & evolution.

[62]  Michel Tenenhaus,et al.  An analysis and synthesis of multiple correspondence analysis, optimal scaling, dual scaling, homogeneity analysis and other methods for quantifying categorical multivariate data , 1985 .

[63]  J. Felsenstein.  Phylogenies and the Comparative Method , 1985, The American Naturalist.

[64]  M. Hill,et al.  PRINCIPAL COMPONENT ANALYSIS OF TAXONOMIC DATA WITH MULTI-STATE DISCRETE CHARACTERS , 1976 .

[65]  G. A. Horridge,et al.  Animal species and evolution. , 1964 .

[66]  J. Grinnell.  The Niche-Relationships of the California Thrasher , 1917 .