NUScon: A community-driven platform for quantitative evaluation of nonuniform sampling in NMR
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Adam D. Schuyler | Jeffrey C. Hoch | Robert Powers | Xiaobo Qu | David L. Donoho | Krzysztof Kazimierczuk | Vladislav Orekhov | Ad Bax | Gerhard Wagner | Mehdi Mobli | Haribabu Arthanari | Hesam Dashti | Mark J. Bostock | Daniel Nietlispach | David Rovnyak | Frank Delaglio | Mark Maciejewski | Bruce A. Johnson | D. L. Craft | Hengfa Lu | Yulia Pustovalova | D. Levi Craft | Martin Billeter | D. Flemming Hansen | Sven G. Hyberts | Tomas M. Miljenovic | Scott Anthony Robson | Jinfa Ying | Matthew Zambrello | D. Donoho | J. Hoch | R. Powers | M. Billeter | A. Bax | Jinfa Ying | X. Qu | S. Hyberts | G. Wagner | D. Rovnyak | V. Orekhov | F. Delaglio | Bruce A Johnson | D. Nietlispach | A. Schuyler | H. Arthanari | M. Maciejewski | M. Mobli | K. Kazimierczuk | Hesam T. Dashti | D. Hansen | Matthew A. Zambrello | S. Robson | Tomas M. Miljenović | M. Bostock | Y. Pustovalova | Hengfa Lu | Tomas Miljenović
[1] Bruce A. Johnson,et al. NMR View: A computer program for the visualization and analysis of NMR data , 1994, Journal of biomolecular NMR.
[2] S. Hyberts,et al. Poisson-gap sampling and forward maximum entropy reconstruction for enhancing the resolution and sensitivity of protein NMR data. , 2010, Journal of the American Chemical Society.
[3] S. Wodak,et al. Modeling protein–protein and protein–peptide complexes: CAPRI 6th edition , 2017, Proteins.
[4] Tibor Simko,et al. Support for HTCondor high-Throughput Computing Workflows in the REANA Reusable Analysis Platform , 2019, 2019 15th International Conference on eScience (eScience).
[5] Sandor Vajda,et al. CAPRI: A Critical Assessment of PRedicted Interactions , 2003, Proteins.
[6] David L. Donoho,et al. Observed universality of phase transitions in high-dimensional geometry, with implications for modern data analysis and signal processing , 2009, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.
[7] P. Schmieder,et al. Application of nonlinear sampling schemes to COSY-type spectra , 1993, Journal of biomolecular NMR.
[8] M. Gill,et al. Efficient and generalized processing of multidimensional NUS NMR data: the NESTA algorithm and comparison of regularization terms , 2015, Journal of biomolecular NMR.
[9] A. Stern,et al. Sparse sampling methods in multidimensional NMR. , 2012, Physical chemistry chemical physics : PCCP.
[10] Krzysztof Kazimierczuk,et al. Causality principle in reconstruction of sparse NMR spectra , 2014, Chemical communications.
[11] David L. Donoho,et al. De-noising by soft-thresholding , 1995, IEEE Trans. Inf. Theory.
[12] The American Institute of Electrical Engineers , 1923, Science.
[13] A. Bax,et al. Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data , 2016, Journal of Biomolecular NMR.
[14] R. Otten,et al. Origin and removal of mixed-phase artifacts in gradient sensitivity enhanced heteronuclear single quantum correlation spectra , 2011, Journal of biomolecular NMR.
[15] R. Riek,et al. Attenuated T2 relaxation by mutual cancellation of dipole–dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution , 2021, NMR with Biological Macromolecules in Solution.
[16] V. Orekhov,et al. Analysis of non-uniformly sampled spectra with multi-dimensional decomposition. , 2011, Progress in nuclear magnetic resonance spectroscopy.
[17] Harry Nyquist. Certain Topics in Telegraph Transmission Theory , 1928 .
[18] Mark W Maciejewski,et al. Formalism for hypercomplex multidimensional NMR employing partial-component subsampling. , 2013, Journal of magnetic resonance.
[19] Miron Livny,et al. NMRbox: A Resource for Biomolecular NMR Computation. , 2017, Biophysical journal.
[20] R. Chylla,et al. Theory and application of the maximum likelihood principle to NMR parameter estimation of multidimensional NMR data , 1995, Journal of biomolecular NMR.
[21] X. Qu,et al. COMPRESSED SENSING FOR SPARSE MAGNETIC RESONANCE SPECTROSCOPY , 2009 .
[22] K. Krishnamurthy. Complete Reduction to Amplitude Frequency Table (CRAFT) - A Perspective. , 2021, Magnetic resonance in chemistry : MRC.
[23] A. Tramontano,et al. Critical assessment of methods of protein structure prediction (CASP)—Round XII , 2018, Proteins.
[24] Richard R. Ernst,et al. Nuclear magnetic resonance Fourier transform spectroscopy , 1992 .
[25] E. Laue,et al. Conventional and exponential sampling for 2D NMR experiments with application to a 2D NMR spectrum of a protein , 1987 .
[26] Stephen P. Boyd,et al. Enhancing Sparsity by Reweighted ℓ1 Minimization , 2007, 0711.1612.
[27] D. Holdstock. Past, present--and future? , 2005, Medicine, conflict, and survival.
[28] V. Orekhov,et al. Accelerated NMR spectroscopy by using compressed sensing. , 2011, Angewandte Chemie.
[29] V. Orekhov,et al. Fast time-resolved NMR with non-uniform sampling. , 2020, Progress in nuclear magnetic resonance spectroscopy.
[30] A. Bax,et al. Mixed-time parallel evolution in multiple quantum NMR experiments: sensitivity and resolution enhancement in heteronuclear NMR , 2007, Journal of biomolecular NMR.
[31] K Fidelis,et al. A large‐scale experiment to assess protein structure prediction methods , 1995, Proteins.
[32] S. Godsill,et al. Deterministic and statistical methods for reconstructing multidimensional NMR spectra , 2006, Magnetic resonance in chemistry : MRC.
[33] Mark J. Bostock,et al. Compressed sensing: Reconstruction of non-uniformly sampled multidimensional NMR data , 2017 .
[34] Jian-Feng Cai,et al. Accelerated NMR spectroscopy with low-rank reconstruction. , 2015, Angewandte Chemie.
[35] Christian Parsbæk Pedersen,et al. Software for reconstruction of non-uniformly sampled NMR data. , 2020, Magnetic resonance in chemistry : MRC.
[36] Martin Billeter,et al. Novel Sampling Approaches in Higher Dimensional NMR , 2012 .
[37] D. Naylor,et al. Apodizing functions for Fourier transform spectroscopy. , 2005, Journal of the Optical Society of America. A, Optics, image science, and vision.
[38] R. Riek,et al. Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[39] Mark W Maciejewski,et al. Robust and transferable quantification of NMR spectral quality using IROC analysis. , 2017, Journal of magnetic resonance.
[40] Detlef Moskau,et al. Application of real time digital filters in NMR spectroscopy , 2002 .
[41] Daniel Nietlispach,et al. Compressed sensing reconstruction of undersampled 3D NOESY spectra: application to large membrane proteins , 2012, Journal of biomolecular NMR.
[42] Richard R. Ernst,et al. Without Computers — No Modern NMR , 1991 .
[43] D. Donoho,et al. Incoherence of Partial-Component Sampling in multidimensional NMR , 2017, 1702.01830.
[44] Krzysztof Kazimierczuk,et al. A comparison of convex and non-convex compressed sensing applied to multidimensional NMR. , 2012, Journal of magnetic resonance.
[45] R. Webster. Magnetic Resonance Spectroscopy , 1962, Nature.
[46] M. Williamson. Using chemical shift perturbation to characterise ligand binding. , 2013, Progress in nuclear magnetic resonance spectroscopy.
[47] M. Billeter,et al. MUNIN: A new approach to multi-dimensional NMR spectra interpretation , 2001, Journal of biomolecular NMR.
[48] Gerhard Wagner,et al. Application of iterative soft thresholding for fast reconstruction of NMR data non-uniformly sampled with multidimensional Poisson Gap scheduling , 2012, Journal of Biomolecular NMR.
[49] D. L. Craft,et al. Developing nonuniform sampling strategies to improve sensitivity and resolution in 1,1‐ADEQUATE experiments , 2020, Magnetic resonance in chemistry : MRC.
[50] D Levi Craft,et al. Nonuniform sampling by quantiles. , 2018, Journal of magnetic resonance.
[51] S. Grzesiek,et al. NMRPipe: A multidimensional spectral processing system based on UNIX pipes , 1995, Journal of biomolecular NMR.
[52] S. Frick,et al. Compressed Sensing , 2014, Computer Vision, A Reference Guide.
[53] A. Stern,et al. Modern spectrum analysis in multidimensional NMR spectroscopy: comparison of linear-prediction extrapolation and maximum-entropy reconstruction. , 2002, Journal of the American Chemical Society.
[54] Alan S. Stern,et al. NMR Data Processing , 1996 .
[55] G. Matson. Signal integration and the signal-to-noise ratio in pulsed NMR relaxation measurements , 1977 .
[56] Richard R. Ernst,et al. The accordion experiment, a simple approach to three-dimensional NMR spectroscopy , 1981 .
[57] Torsten Schwede,et al. Critical assessment of methods of protein structure prediction (CASP)—Round XIII , 2019, Proteins.