Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin
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B. Andersen | Federico Bocci | L. Tsoi | J. Gudjonsson | J. Kahlenberg | X. Xing | A. Billi | W. Swindell | P. Harms | E. Maverakis | M. Gharaee-Kermani | E. Xing | R. Wasikowski | J. Kahlenberg | Feiyang Ma | J. M. Kahlenberg | Ghaidaa Kashgari | Qing Nie | Julie Wiedemann | Leo Meller | F. Bocci | J. Wiedemann | M. Gharaee-Kermani
[1] B. Andersen,et al. Biogeographic and disease-specific alterations in epidermal lipid composition and single-cell analysis of acral keratinocytes , 2022, JCI insight.
[2] F. Schumacher,et al. The glucose transporter GLUT3 controls T helper 17 cell responses through glycolytic-epigenetic reprogramming. , 2022, Cell metabolism.
[3] S. Teichmann,et al. Developmental cell programs are co-opted in inflammatory skin disease , 2021, Science.
[4] Lihua Zhang,et al. Inference and analysis of cell-cell communication using CellChat , 2020, Nature Communications.
[5] A. Tward,et al. Human melanocyte development and melanoma dedifferentiation at single cell resolution , 2020, bioRxiv.
[6] M. Araúzo-Bravo,et al. Human dermal fibroblast subpopulations are conserved across single-cell RNA sequencing studies. , 2020, The Journal of investigative dermatology.
[7] B. Andersen,et al. Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states , 2020, Nature Communications.
[8] Hannes P. Saal,et al. Tactile innervation densities across the whole body. , 2020, Journal of neurophysiology.
[9] J. Voorhees,et al. Contribution of plasma cells and B cells to hidradenitis suppurativa pathogenesis , 2020, JCI insight.
[10] Adam L. Maclean,et al. Single cell transcriptomics of human epidermis identifies basal stem cell transition states , 2020, Nature Communications.
[11] J. Mallm,et al. Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming , 2020, Communications Biology.
[12] N. Fortunel,et al. Fibroblasts from the Human Skin Dermo-Hypodermal Junction are Distinct from Dermal Papillary and Reticular Fibroblasts and from Mesenchymal Stem Cells and Exhibit a Specific Molecular Profile Related to Extracellular Matrix Organization and Modeling , 2020, Cells.
[13] M. Mildner,et al. Deciphering the functional heterogeneity of skin fibroblasts using single‐cell RNA sequencing , 2020, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[14] Kerstin B. Meyer,et al. BBKNN: fast batch alignment of single cell transcriptomes , 2019, Bioinform..
[15] C. J. Boyle,et al. Morphology and composition play distinct and complementary roles in the tolerance of plantar skin to mechanical load , 2019, Science Advances.
[16] C. Andl,et al. Divide and conquer: two stem cell populations in squamous epithelia, reserves and the active duty forces , 2019, International Journal of Oral Science.
[17] Paul J. Hoffman,et al. Comprehensive Integration of Single-Cell Data , 2018, Cell.
[18] Alireza Hadj Khodabakhshi,et al. Metascape provides a biologist-oriented resource for the analysis of systems-level datasets , 2019, Nature Communications.
[19] Fabian J Theis,et al. PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells , 2019, Genome biology.
[20] Miguel Angel Martin-Piedra,et al. Characterization of the human ridged and non-ridged skin: a comprehensive histological, histochemical and immunohistochemical analysis , 2018, Histochemistry and Cell Biology.
[21] Paul Hoffman,et al. Integrating single-cell transcriptomic data across different conditions, technologies, and species , 2018, Nature Biotechnology.
[22] Z. J. Huang,et al. Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor , 2018, Nature Communications.
[23] Wei Chen,et al. SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin. , 2017, The Journal of investigative dermatology.
[24] N. Fortunel,et al. Genome-wide profiling of adult human papillary and reticular fibroblasts identifies ACAN, Col XI α1, and PSG1 as general biomarkers of dermis ageing, and KANK4 as an exemplary effector of papillary fibroblast ageing, related to contractility , 2018, Mechanisms of Ageing and Development.
[25] Fabian J Theis,et al. SCANPY: large-scale single-cell gene expression data analysis , 2018, Genome Biology.
[26] Hannah A. Pliner,et al. Reversed graph embedding resolves complex single-cell trajectories , 2017, Nature Methods.
[27] B. Closs,et al. Human Dermal Fibroblast Subpopulations Display Distinct Gene Signatures Related to Cell Behaviors and Matrisome. , 2017, The Journal of investigative dermatology.
[28] Lee Ann McCue,et al. FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool , 2017, Bioinform..
[29] J. Aerts,et al. SCENIC: Single-cell regulatory network inference and clustering , 2017, Nature Methods.
[30] B. Andersen,et al. GRHL3 binding and enhancers rearrange as epidermal keratinocytes transition between functional states , 2017, PLoS genetics.
[31] D. Kelsell,et al. Rhomboid family member 2 regulates cytoskeletal stress-associated Keratin 16 , 2017, Nature Communications.
[32] Toshihiro Tanaka,et al. Mutation analysis of IL36RN gene in Japanese patients with palmoplantar pustulosis , 2017, The Journal of dermatology.
[33] Jeffrey T Leek,et al. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown , 2016, Nature Protocols.
[34] J. Taube,et al. To Control Site-Specific Skin Gene Expression, Autocrine Mimics Paracrine Canonical Wnt Signaling and Is Activated Ectopically in Skin Disease. , 2016, The American journal of pathology.
[35] C. Has,et al. Palmoplantar keratodermas: clinical and genetic aspects , 2016, Journal der Deutschen Dermatologischen Gesellschaft = Journal of the German Society of Dermatology : JDDG.
[36] Yoonkyung Park,et al. The Alpha-Melanocyte-Stimulating Hormone Suppresses TLR2-Mediated Functional Responses through IRAK-M in Normal Human Keratinocytes , 2015, PloS one.
[37] Steven L Salzberg,et al. HISAT: a fast spliced aligner with low memory requirements , 2015, Nature Methods.
[38] S. Salzberg,et al. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads , 2015, Nature Biotechnology.
[39] A. Regev,et al. Spatial reconstruction of single-cell gene expression , 2015, Nature Biotechnology.
[40] Cole Trapnell,et al. Pseudo-temporal ordering of individual cells reveals dynamics and regulators of cell fate decisions , 2014, Nature Biotechnology.
[41] Brian Bushnell,et al. BBMap: A Fast, Accurate, Splice-Aware Aligner , 2014 .
[42] J. McGrath,et al. Keratin 9 Is Required for the Structural Integrity and Terminal Differentiation of the Palmoplantar Epidermis , 2013, The Journal of investigative dermatology.
[43] G. Saintigny,et al. Papillary fibroblasts differentiate into reticular fibroblasts after prolonged in vitro culture , 2013, Experimental dermatology.
[44] Pelin Yilmaz,et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools , 2012, Nucleic Acids Res..
[45] G. Saintigny,et al. Different gene expression patterns in human papillary and reticular fibroblasts. , 2012, The Journal of investigative dermatology.
[46] Wei Li,et al. RSeQC: quality control of RNA-seq experiments , 2012, Bioinform..
[47] K. Feingold. Lamellar bodies: the key to cutaneous barrier function. , 2012, The Journal of investigative dermatology.
[48] Michael D. Zeller,et al. GRHL3/GET1 and Trithorax Group Members Collaborate to Activate the Epidermal Progenitor Differentiation Program , 2012, PLoS genetics.
[49] Chris Williams,et al. RNA-SeQC: RNA-seq metrics for quality control and process optimization , 2012, Bioinform..
[50] M. Simpson,et al. Mutations in IL36RN/IL1F5 are associated with the severe episodic inflammatory skin disease known as generalized pustular psoriasis. , 2011, American journal of human genetics.
[51] A. Blauvelt,et al. Increased IL-23 expression in palmoplantar psoriasis and hyperkeratotic hand dermatitis. , 2010, Archives of dermatology.
[52] E. Lane,et al. Keratin K6c mutations cause focal palmoplantar keratoderma. , 2010, The Journal of investigative dermatology.
[53] Mark D. Robinson,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[54] M. Robinson,et al. A scaling normalization method for differential expression analysis of RNA-seq data , 2010, Genome Biology.
[55] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[56] S. Piña‐Oviedo,et al. The normal and neoplastic perineurium: a review. , 2008, Advances in anatomic pathology.
[57] Freddy Radtke,et al. Multiple roles of Notch signaling in the regulation of epidermal development. , 2008, Developmental cell.
[58] Howard Y. Chang,et al. A systems biology approach to anatomic diversity of skin. , 2008, The Journal of investigative dermatology.
[59] R. Alon,et al. Integrin modulation and signaling in leukocyte adhesion and migration , 2007, Immunological reviews.
[60] Zhengquan Yu,et al. The Grainyhead-like epithelial transactivator Get-1/Grhl3 regulates epidermal terminal differentiation and interacts functionally with LMO4. , 2006, Developmental biology.
[61] Fiona M Watt,et al. Single-cell expression profiling of human epidermal stem and transit-amplifying cells: Lrig1 is a regulator of stem cell quiescence , 2006, Proceedings of the National Academy of Sciences.
[62] Pablo Tamayo,et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[63] M. Daly,et al. PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes , 2003, Nature Genetics.
[64] H. Soto,et al. CCL27–CCR10 interactions regulate T cell–mediated skin inflammation , 2002, Nature Medicine.
[65] B. Kumar,et al. Palmoplantar lesions in psoriasis: a study of 3065 patients. , 2002, Acta dermato-venereologica.
[66] Freddy Radtke,et al. Notch signaling is a direct determinant of keratinocyte growth arrest and entry into differentiation , 2001, The EMBO journal.
[67] M. Mihm,et al. GLUT1: a newly discovered immunohistochemical marker for juvenile hemangiomas. , 2000, Human pathology.
[68] K. Yoshikawa,et al. Regulation of keratin 9 in nonpalmoplantar keratinocytes by palmoplantar fibroblasts through epithelial-mesenchymal interactions. , 1999, The Journal of investigative dermatology.
[69] D E Gyi,et al. Interface pressure and the prediction of car seat discomfort. , 1999, Applied ergonomics.
[70] Eady,et al. Specialized keratin expression pattern in human ridged skin as an adaptation to high physical stress , 1998, The British journal of dermatology.
[71] T. Stephenson,et al. Cytokine and chemokine regulation of proMMP-9 and TIMP-1 production by human peripheral blood lymphocytes. , 1997, Journal of immunology.
[72] W. Panje,et al. Proliferation of epithelia of noninvolved mucosa in patients with head and neck cancer , 1996, Head & neck.
[73] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[74] A. Sonnenberg,et al. Expression of the integrin alpha 6 beta 4 in peripheral nerves: localization in Schwann and perineural cells and different variants of the beta 4 subunit. , 1994, Journal of cell science.
[75] Karl Sperling,et al. Keratin 9 gene mutations in epidermolytic palmoplantar keratoderma (EPPK) , 1994, Nature Genetics.
[76] C Fransson-Hall,et al. Sensitivity of the hand to surface pressure. , 1993, Applied ergonomics.
[77] E M Hennig,et al. Pressure Distribution Patterns under the Feet of Children in Comparison with Adults , 1991, Foot & ankle.
[78] H. Winter,et al. Identification of murine type I keratin 9 (73 kDa) and its immunolocalization in neonatal and adult mouse foot sole epidermis. , 1989, Experimental cell research.
[79] R. Moll,et al. Distribution of a special subset of keratinocytes characterized by the expression of cytokeratin 9 in adult and fetal human epidermis of various body sites. , 1987, Differentiation; research in biological diversity.
[80] J. Jorcano,et al. Cytokeratin No. 9, an epidermal type I keratin characteristic of a special program of keratinocyte differentiation displaying body site specificity , 1986, The Journal of cell biology.
[81] F. Watt. Involucrin and other markers of keratinocyte terminal differentiation. , 1983, The Journal of investigative dermatology.
[82] G. Weinstein,et al. Location of proliferating cells in human epidermis. , 1970, Archives of dermatology.
[83] H. Pinkus,et al. The direction of the mitotic axis in human epidermis. , 1966, Archives of dermatology.