Early diagnosis of Alzheimer's disease based on partial least squares, principal component analysis and support vector machine using segmented MRI images

Abstract Computer aided diagnosis (CAD) systems using functional and structural imaging techniques enable physicians to detect early stages of the Alzheimer׳s disease (AD). For this purpose, magnetic resonance imaging (MRI) have been proved to be very useful in the assessment of pathological tissues in AD. This paper presents a new CAD system that allows the early AD diagnosis using tissue-segmented brain images. The proposed methodology aims to discriminate between AD, mild cognitive impairment (MCI) and elderly normal control (NC) subjects and is based on several multivariate approaches, such as partial least squares (PLS) and principal component analysis (PCA). In this study, 188 AD patients, 401 MCI patients and 229 control subjects from the Alzheimer׳s Disease Neuroimaging Initiative (ADNI) database were studied. Automated brain tissue segmentation was performed for each image obtaining gray matter (GM) and white matter (WM) tissue distributions. The validity of the analyzed methods was tested on the ADNI database by implementing support vector machine classifiers with linear or radial basis function (RBF) kernels to distinguish between normal subjects and AD patients. The performance of our methodology is validated using k-fold cross technique where the system based on PLS feature extraction and linear SVM classifier outperformed the PCA method. In addition, PLS feature extraction is found to be more effective for extracting discriminative information from the data. In this regard, the developed latter CAD system yielded maximum sensitivity, specificity and accuracy values of 85.11%, 91.27% and 88.49%, respectively.

[1]  Nikolaos K. Uzunoglu,et al.  Phased-Array Near Field Radiometry for Brain Intracranial Applications , 2010 .

[2]  F. Shi,et al.  Hippocampal Shape Analysis of Alzheimer Disease Based on Machine Learning Methods , 2007, American Journal of Neuroradiology.

[3]  Juan Manuel Górriz,et al.  GMM based SPECT image classification for the diagnosis of Alzheimer's disease , 2011, Appl. Soft Comput..

[4]  M. Albert,et al.  Temporal lobe regions on magnetic resonance imaging identify patients with early Alzheimer's disease. , 1993, Archives of neurology.

[5]  H. Soininen,et al.  Comparative MR analysis of the entorhinal cortex and hippocampus in diagnosing Alzheimer disease. , 1999, AJNR. American journal of neuroradiology.

[6]  C. Phillips,et al.  Combining PET Images and Neuropsychological Test Data for Automatic Diagnosis of Alzheimer's Disease , 2014, PloS one.

[7]  Heng Tao Shen,et al.  Principal Component Analysis , 2009, Encyclopedia of Biometrics.

[8]  Xiaoying Wu,et al.  Structural and functional biomarkers of prodromal Alzheimer's disease: A high-dimensional pattern classification study , 2008, NeuroImage.

[9]  Jennifer Margrett,et al.  The Relationship between Physical Health and Psychological Well-Being among Oldest-Old Adults , 2011, Journal of aging research.

[10]  Yudong Zhang,et al.  MAGNETIC RESONANCE BRAIN IMAGE CLASSIFICATION BY AN IMPROVED ARTIFICIAL BEE COLONY ALGORITHM , 2011 .

[11]  S. Wold,et al.  The Collinearity Problem in Linear Regression. The Partial Least Squares (PLS) Approach to Generalized Inverses , 1984 .

[12]  Juan Manuel Górriz,et al.  NMF-SVM Based CAD Tool Applied to Functional Brain Images for the Diagnosis of Alzheimer's Disease , 2012, IEEE Transactions on Medical Imaging.

[13]  I. Álvarez,et al.  SVM-based CAD system for early detection of the Alzheimer's disease using kernel PCA and LDA , 2009, Neuroscience Letters.

[14]  S. Resnick,et al.  Detection of prodromal Alzheimer's disease via pattern classification of magnetic resonance imaging , 2008, Neurobiology of Aging.

[15]  V. Vapnik Estimation of Dependences Based on Empirical Data , 2006 .

[16]  Kathryn Ziegler-Graham,et al.  Forecasting the global burden of Alzheimer’s disease , 2007, Alzheimer's & Dementia.

[17]  Sven Haller,et al.  White Matter Changes in Bipolar Disorder, Alzheimer Disease, and Mild Cognitive Impairment: New Insights from DTI , 2011, Journal of aging research.

[18]  J. Ramírez,et al.  SVM-based computer-aided diagnosis of the Alzheimer's disease using t-test NMSE feature selection with feature correlation weighting , 2009, Neuroscience Letters.

[19]  F. Segovia,et al.  Computer aided diagnosis system for the Alzheimer's disease based on partial least squares and random forest SPECT image classification , 2010, Neuroscience Letters.

[20]  Juan Manuel Górriz,et al.  A comparative study of feature extraction methods for the diagnosis of Alzheimer's disease using the ADNI database , 2012, Neurocomputing.

[21]  C. Metz Basic principles of ROC analysis. , 1978, Seminars in nuclear medicine.

[22]  Robert P. W. Duin,et al.  Classifiers in almost empty spaces , 2000, Proceedings 15th International Conference on Pattern Recognition. ICPR-2000.

[23]  Sterling C. Johnson,et al.  Magnetic Resonance Imaging Characterization of Brain Structure and Function in Mild Cognitive Impairment: A Review , 2008, Journal of the American Geriatrics Society.

[24]  Sun I. Kim,et al.  Pattern classification using principal components of cortical thickness and its discriminative pattern in schizophrenia , 2007, NeuroImage.

[25]  Nick C Fox,et al.  Automatic classification of MR scans in Alzheimer's disease. , 2008, Brain : a journal of neurology.

[26]  S Lehéricy,et al.  Amygdalohippocampal MR volume measurements in the early stages of Alzheimer disease. , 1994, AJNR. American journal of neuroradiology.

[27]  A. Andersen,et al.  Principal component analysis of the dynamic response measured by fMRI: a generalized linear systems framework. , 1999, Magnetic resonance imaging.

[28]  R Cameron Craddock,et al.  Disease state prediction from resting state functional connectivity , 2009, Magnetic resonance in medicine.

[29]  Kiralee M. Hayashi,et al.  Dynamics of Gray Matter Loss in Alzheimer's Disease , 2003, The Journal of Neuroscience.

[30]  H. Benali,et al.  Discrimination between Alzheimer disease, mild cognitive impairment, and normal aging by using automated segmentation of the hippocampus. , 2008, Radiology.

[31]  C. Jack,et al.  MRI as a biomarker of disease progression in a therapeutic trial of milameline for AD , 2003, Neurology.

[32]  A. Burns Clinical diagnosis of Alzheimer's disease , 1991 .

[33]  Nello Cristianini,et al.  An Introduction to Support Vector Machines and Other Kernel-based Learning Methods , 2000 .

[34]  Juan Manuel Górriz,et al.  Automatic tool for Alzheimer's disease diagnosis using PCA and Bayesian classification rules , 2009 .

[35]  D. Louis Collins,et al.  Multivariate analysis of MRI data for Alzheimer's disease, mild cognitive impairment and healthy controls , 2011, NeuroImage.

[36]  U. Edlund,et al.  Visualization of GC/TOF-MS-based metabolomics data for identification of biochemically interesting compounds using OPLS class models. , 2008, Analytical chemistry.

[37]  Frederik Barkhof,et al.  Structural magnetic resonance imaging in the practical assessment of dementia: beyond exclusion , 2002, The Lancet Neurology.

[38]  H. Soininen,et al.  MRI of the Hippocampus in Alzheimer’s Disease: Sensitivity, Specificity, and Analysis of the Incorrectly Classified Subjects , 1998, Neurobiology of Aging.

[39]  Norbert Schuff,et al.  Automated mapping of hippocampal atrophy in 1-year repeat MRI data from 490 subjects with Alzheimer's disease, mild cognitive impairment, and elderly controls , 2009, NeuroImage.

[40]  Danh V. Nguyen,et al.  Tumor classification by partial least squares using microarray gene expression data , 2002, Bioinform..

[41]  Nick C Fox,et al.  Using serial registered brain magnetic resonance imaging to measure disease progression in Alzheimer disease: power calculations and estimates of sample size to detect treatment effects. , 2000, Archives of neurology.

[42]  M. Turk,et al.  Eigenfaces for Recognition , 1991, Journal of Cognitive Neuroscience.

[43]  Dinggang Shen,et al.  Classification of Structural Images via High-Dimensional Image Warping, Robust Feature Extraction, and SVM , 2005, MICCAI.

[44]  Roman Rosipal,et al.  Kernel PLS-SVC for Linear and Nonlinear Classification , 2003, ICML.

[45]  F. Segovia,et al.  Classification of functional brain images using a GMM-based multi-variate approach , 2010, Neuroscience Letters.

[46]  Juan Manuel Górriz,et al.  Early diagnosis of Alzheimer's disease based on Partial Least Squares and Support Vector Machine , 2013, Expert Syst. Appl..

[47]  Anders H. Andersen,et al.  Alterations in multiple measures of white matter integrity in normal women at high risk for Alzheimer's disease , 2010, NeuroImage.

[48]  Kejal Kantarci,et al.  Magnetic resonance markers for early diagnosis and progression of Alzheimer’s disease , 2005, Expert review of neurotherapeutics.

[49]  Michel Tenenhaus,et al.  PLS generalised linear regression , 2005, Comput. Stat. Data Anal..

[50]  Alexander J. Smola,et al.  Learning with kernels , 1998 .

[51]  M. Folstein,et al.  Clinical diagnosis of Alzheimer's disease , 1984, Neurology.

[52]  J T O'Brien,et al.  Role of imaging techniques in the diagnosis of dementia. , 2007, The British journal of radiology.

[53]  Marie Chupin,et al.  Automatic classi fi cation of patients with Alzheimer ' s disease from structural MRI : A comparison of ten methods using the ADNI database , 2010 .

[54]  Nick C Fox,et al.  Presymptomatic hippocampal atrophy in Alzheimer's disease. A longitudinal MRI study. , 1996, Brain : a journal of neurology.

[55]  Janaina Mourão Miranda,et al.  Classifying brain states and determining the discriminating activation patterns: Support Vector Machine on functional MRI data , 2005, NeuroImage.

[56]  C. Jack,et al.  Medial temporal atrophy on MRI in normal aging and very mild Alzheimer's disease , 1997, Neurology.

[57]  Dinggang Shen,et al.  Morphological classification of brains via high-dimensional shape transformations and machine learning methods , 2004, NeuroImage.

[58]  Juan Manuel Górriz,et al.  Alzheimer's Diagnosis Using Eigenbrains and Support Vector Machines , 2009, IWANN.