Insights into the Recent 2019 Novel Coronavirus (SARS-CoV-2) in Light of Past Human Coronavirus Outbreaks

Coronaviruses (CoVs) are RNA viruses that have become a major public health concern since the Severe Acute Respiratory Syndrome-CoV (SARS-CoV) outbreak in 2002. The continuous evolution of coronaviruses was further highlighted with the emergence of the Middle East Respiratory Syndrome-CoV (MERS-CoV) outbreak in 2012. Currently, the world is concerned about the 2019 novel CoV (SARS-CoV-2) that was initially identified in the city of Wuhan, China in December 2019. Patients presented with severe viral pneumonia and respiratory illness. The number of cases has been mounting since then. As of late February 2020, tens of thousands of cases and several thousand deaths have been reported in China alone, in addition to thousands of cases in other countries. Although the fatality rate of SARS-CoV-2 is currently lower than SARS-CoV, the virus seems to be highly contagious based on the number of infected cases to date. In this review, we discuss structure, genome organization, entry of CoVs into target cells, and provide insights into past and present outbreaks. The future of human CoV outbreaks will not only depend on how the viruses will evolve, but will also depend on how we develop efficient prevention and treatment strategies to deal with this continuous threat.

[1]  Shou-Jiang Gao,et al.  Global health concerns stirred by emerging viral infections , 2020, Journal of medical virology.

[2]  Lisa E. Gralinski,et al.  Return of the Coronavirus: 2019-nCoV , 2020, Viruses.

[3]  F. Taguchi,et al.  Localization of neutralizing epitopes and the receptor-binding site within the amino-terminal 330 amino acids of the murine coronavirus spike protein , 1994, Journal of virology.

[4]  S. Lindstrom,et al.  First Case of 2019 Novel Coronavirus in the United States , 2020, The New England journal of medicine.

[5]  Potent binding of 2019 novel coronavirus spike protein by a SARS coronavirus-specific human monoclonal antibody , 2020, Emerging microbes & infections.

[6]  Tao Liu,et al.  Time-varying transmission dynamics of Novel Coronavirus Pneumonia in China , 2020, medRxiv.

[7]  B. Canard,et al.  The spike glycoprotein of the new coronavirus 2019-nCoV contains a furin-like cleavage site absent in CoV of the same clade , 2020, Antiviral Research.

[8]  R. Baric,et al.  Identification of human neutralizing antibodies against MERS-CoV and their role in virus adaptive evolution , 2014, Proceedings of the National Academy of Sciences.

[9]  M. Müller,et al.  Challenges of Convalescent Plasma Infusion Therapy in Middle East Respiratory Coronavirus Infection: A Single Centre Experience , 2018, Antiviral therapy.

[10]  Makoto Takeda,et al.  Efficient Activation of the Severe Acute Respiratory Syndrome Coronavirus Spike Protein by the Transmembrane Protease TMPRSS2 , 2010, Journal of Virology.

[11]  G. Kampf Efficacy of ethanol against viruses in hand disinfection , 2017, Journal of Hospital Infection.

[12]  D. Dimitrov,et al.  The SARS-CoV S glycoprotein: expression and functional characterization , 2003, Biochemical and Biophysical Research Communications.

[13]  Peter Kuhn,et al.  Supramolecular Architecture of Severe Acute Respiratory Syndrome Coronavirus Revealed by Electron Cryomicroscopy , 2006, Journal of Virology.

[14]  M. Clerici,et al.  Molecular Evolution of Human Coronavirus Genomes , 2016, Trends in Microbiology.

[15]  G. Izaguirre The Proteolytic Regulation of Virus Cell Entry by Furin and Other Proprotein Convertases , 2019, Viruses.

[16]  J. Tam,et al.  Human Coronaviruses: A Review of Virus–Host Interactions , 2016, Diseases.

[17]  M. Killerby,et al.  Middle East Respiratory Syndrome Coronavirus Transmission , 2020, Emerging infectious diseases.

[18]  Jonathan H. Epstein,et al.  Bats Are Natural Reservoirs of SARS-Like Coronaviruses , 2005, Science.

[19]  P. Masters,et al.  The Molecular Biology of Coronaviruses , 2006, Advances in Virus Research.

[20]  Chun-Ming Lin,et al.  Evolution, antigenicity and pathogenicity of global porcine epidemic diarrhea virus strains , 2016, Virus Research.

[21]  Elisabeth Mahase China coronavirus: WHO declares international emergency as death toll exceeds 200 , 2020, BMJ.

[22]  D. Cummings,et al.  Novel coronavirus 2019-nCoV: early estimation of epidemiological parameters and epidemic predictions , 2020, medRxiv.

[23]  B. Paital Nurture to nature via COVID-19, a self-regenerating environmental strategy of environment in global context , 2020, Science of The Total Environment.

[24]  Amit Kapoor,et al.  Middle East Respiratory Syndrome Coronavirus in Bats, Saudi Arabia , 2013, Emerging infectious diseases.

[25]  Chengsheng Zhang,et al.  Receptor and viral determinants of SARS-coronavirus adaptation to human ACE2 , 2005, The EMBO journal.

[26]  H. Ashour Immune tolerance elicited via unique ocular and oral routes. , 2015, Current molecular medicine.

[27]  Logistic and organizational aspects of a dedicated intensive care unit for COVID-19 patients , 2020, Critical Care.

[28]  Jie Dong,et al.  Identification of a novel coronavirus causing severe pneumonia in human: a descriptive study , 2020, Chinese medical journal.

[29]  X. L. Liu,et al.  Isolation and Characterization of Viruses Related to the SARS Coronavirus from Animals in Southern China , 2003, Science.

[30]  X. Gu,et al.  Evolutionary Dynamics of MERS-CoV: Potential Recombination, Positive Selection and Transmission , 2016, Scientific Reports.

[31]  E. Holmes,et al.  Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding , 2020, The Lancet.

[32]  Ka Chun Chong,et al.  Approximate Bayesian algorithm to estimate the basic reproduction number in an influenza pandemic using arrival times of imported cases. , 2018, Travel medicine and infectious disease.

[33]  Wenjun Ma,et al.  Transmission Dynamics of 2019 Novel Coronavirus (2019-nCoV) , 2020 .

[34]  Justine R. Smith,et al.  Retinal Pigment Epithelial Cells are a Potential Reservoir for Ebola Virus in the Human Eye , 2017, Translational vision science & technology.

[35]  Wei-Lun Chang,et al.  Modular organization of SARS coronavirus nucleocapsid protein , 2005, Journal of biomedical science.

[36]  C. Althaus,et al.  Pattern of early human-to-human transmission of Wuhan 2019 novel coronavirus (2019-nCoV), December 2019 to January 2020 , 2020, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

[37]  Abraham J. Koster,et al.  Cryo-electron tomography of mouse hepatitis virus: Insights into the structure of the coronavirion , 2009, Proceedings of the National Academy of Sciences.

[38]  P. Vollmar,et al.  Transmission of 2019-nCoV Infection from an Asymptomatic Contact in Germany , 2020, The New England journal of medicine.

[39]  J. Wallinga,et al.  The incubation period of 2019-nCoV infections among travellers from Wuhan, China , 2020, medRxiv.

[40]  C. A. Koetzner,et al.  Identification of In Vivo-Interacting Domains of the Murine Coronavirus Nucleocapsid Protein , 2009, Journal of Virology.

[41]  Christian Drosten,et al.  Identification of a novel coronavirus in patients with severe acute respiratory syndrome. , 2003, The New England journal of medicine.

[42]  P. Chan,et al.  Experience of using convalescent plasma for severe acute respiratory syndrome among healthcare workers in a Taiwan hospital , 2005, The Journal of antimicrobial chemotherapy.

[43]  S. Lo,et al.  A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster , 2020, The Lancet.

[44]  P. Woo,et al.  Genetic Characterization of Betacoronavirus Lineage C Viruses in Bats Reveals Marked Sequence Divergence in the Spike Protein of Pipistrellus Bat Coronavirus HKU5 in Japanese Pipistrelle: Implications for the Origin of the Novel Middle East Respiratory Syndrome Coronavirus , 2013, Journal of Virology.

[45]  G. Browning,et al.  Infectious Bronchitis Viruses with a Novel Genomic Organization , 2007, Journal of Virology.

[46]  S. Lam,et al.  Comparing mask fit and usability of traditional and nanofibre N95 filtering facepiece respirators before and after nursing procedures. , 2020, The Journal of hospital infection.

[47]  S. Perlman,et al.  Coronaviruses: An Overview of Their Replication and Pathogenesis , 2015, Methods in molecular biology.

[48]  Don Klinkenberg,et al.  Incubation period of 2019 novel coronavirus (2019-nCoV) infections among travellers from Wuhan, China, 20–28 January 2020 , 2020, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

[49]  E. Koepf,et al.  Evaluation of eco‐friendly zwitterionic detergents for enveloped virus inactivation , 2017, Biotechnology and bioengineering.

[50]  J. Robins,et al.  Transmission Dynamics and Control of Severe Acute Respiratory Syndrome , 2003, Science.

[51]  M. Guida,et al.  Current emerging SARS-CoV-2 pandemic: Potential direct/indirect negative impacts of virus persistence and related therapeutic drugs on the aquatic compartments , 2020, Environmental Research.

[52]  Ben Berkhout,et al.  Human coronavirus NL63 employs the severe acute respiratory syndrome coronavirus receptor for cellular entry , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[53]  R. Baric,et al.  Subgenomic Negative-Strand RNA Function during Mouse Hepatitis Virus Infection , 2000, Journal of Virology.

[54]  Christian Drosten,et al.  Dipeptidyl peptidase 4 is a functional receptor for the emerging human coronavirus-EMC , 2013, Nature.

[55]  J. Miłek,et al.  Coronaviruses in Avian Species – Review with Focus on Epidemiology and Diagnosis in Wild Birds , 2018, Journal of veterinary research.

[56]  Jing Zhao,et al.  Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia , 2020, The New England journal of medicine.

[57]  A. Klausegger,et al.  Identification of a Coronavirus Hemagglutinin-Esterase with a Substrate Specificity Different from Those of Influenza C Virus and Bovine Coronavirus , 1999, Journal of Virology.

[58]  L. van der Hoek Human Coronaviruses: What Do They Cause? , 2005, Antiviral therapy.

[59]  M. Hoffmann,et al.  Functional analysis of potential cleavage sites in the MERS-coronavirus spike protein , 2018, Scientific Reports.

[60]  B. Bosch,et al.  Cathepsin L Functionally Cleaves the Severe Acute Respiratory Syndrome Coronavirus Class I Fusion Protein Upstream of Rather than Adjacent to the Fusion Peptide , 2008, Journal of Virology.

[61]  M. Lai,et al.  Further characterization of mouse hepatitis virus RNA-dependent RNA polymerases , 1984, Virology.

[62]  S. Sawicki,et al.  Coronavirus transcription: subgenomic mouse hepatitis virus replicative intermediates function in RNA synthesis , 1990, Journal of virology.

[63]  M. Chan-yeung,et al.  SARS: epidemiology , 2003, Respirology.

[64]  A. Chughtai,et al.  Persistence of Ebola virus in various body fluids during convalescence: evidence and implications for disease transmission and control , 2016, Epidemiology and Infection.

[65]  Silvia Angeletti,et al.  The 2019‐new coronavirus epidemic: Evidence for virus evolution , 2020, Journal of medical virology.

[66]  Yufei Wang,et al.  A Novel Nanobody Targeting Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Receptor-Binding Domain Has Potent Cross-Neutralizing Activity and Protective Efficacy against MERS-CoV , 2018, Journal of Virology.

[67]  S. Weiss,et al.  The N-Terminal Domain of the Murine Coronavirus Spike Glycoprotein Determines the CEACAM1 Receptor Specificity of the Virus Strain , 2003, Journal of Virology.

[68]  K. Yuen,et al.  Differential maturation and subcellular localization of severe acute respiratory syndrome coronavirus surface proteins S, M and E. , 2005, The Journal of general virology.

[69]  Shibo Jiang,et al.  Identification and characterization of novel neutralizing epitopes in the receptor-binding domain of SARS-CoV spike protein: Revealing the critical antigenic determinants in inactivated SARS-CoV vaccine , 2006, Vaccine.

[70]  Ralph S. Baric,et al.  Receptor Recognition by the Novel Coronavirus from Wuhan: an Analysis Based on Decade-Long Structural Studies of SARS Coronavirus , 2020, Journal of Virology.

[71]  M. Lai Coronavirus: organization, replication and expression of genome. , 1990, Annual review of microbiology.

[72]  Patrick T. Dolan,et al.  Mechanisms and Concepts in RNA Virus Population Dynamics and Evolution. , 2018, Annual review of virology.

[73]  S. Morikawa,et al.  Protease-mediated enhancement of severe acute respiratory syndrome coronavirus infection. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[74]  G. Leung,et al.  Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study , 2020, The Lancet.

[75]  J. Zarocostas Ebola outbreak declared a PHEIC, world waits for next steps , 2019, The Lancet.

[76]  Marion P G Koopmans,et al.  Middle East respiratory syndrome coronavirus in dromedary camels: an outbreak investigation , 2013, The Lancet Infectious Diseases.

[77]  Xiaolei Yin,et al.  Identification of an Antigenic Determinant on the S2 Domain of the Severe Acute Respiratory Syndrome Coronavirus Spike Glycoprotein Capable of Inducing Neutralizing Antibodies , 2004, Journal of Virology.

[78]  T. Adrian,et al.  SARS-CoV-2/COVID-19: Viral Genomics, Epidemiology, Vaccines, and Therapeutic Interventions , 2020, Viruses.

[79]  D. He,et al.  Modeling the spread of Middle East respiratory syndrome coronavirus in Saudi Arabia , 2018, Statistical methods in medical research.

[80]  B. Prabhakar,et al.  Generation and characterization of human monoclonal neutralizing antibodies with distinct binding and sequence features against SARS coronavirus using XenoMouse® , 2006, Virology.

[81]  J. Peiris,et al.  The M, E, and N Structural Proteins of the Severe Acute Respiratory Syndrome Coronavirus Are Required for Efficient Assembly, Trafficking, and Release of Virus-Like Particles , 2008, Journal of Virology.

[82]  Mikiko Senga,et al.  Middle East Respiratory Syndrome. , 2017, The New England journal of medicine.

[83]  C. Broder,et al.  Identification of a Broad-Spectrum Antiviral Small Molecule against Severe Acute Respiratory Syndrome Coronavirus and Ebola, Hendra, and Nipah Viruses by Using a Novel High-Throughput Screening Assay , 2014, Journal of Virology.

[84]  L. Gostin,et al.  The Novel Coronavirus Originating in Wuhan, China: Challenges for Global Health Governance. , 2020, JAMA.

[85]  Amit Kapoor,et al.  Middle East Respiratory Syndrome Coronavirus Infection in Dromedary Camels in Saudi Arabia , 2014, mBio.

[86]  K. Überla,et al.  S Protein of Severe Acute Respiratory Syndrome-Associated Coronavirus Mediates Entry into Hepatoma Cell Lines and Is Targeted by Neutralizing Antibodies in Infected Patients , 2004, Journal of Virology.

[87]  B. Prabhakar,et al.  Human Monoclonal Antibodies against Highly Conserved HR1 and HR2 Domains of the SARS-CoV Spike Protein Are More Broadly Neutralizing , 2012, PloS one.

[88]  Gary R. Whittaker,et al.  Host cell proteases: Critical determinants of coronavirus tropism and pathogenesis , 2014, Virus Research.

[89]  B. Bosch,et al.  MERS Coronavirus Neutralizing Antibodies in Camels, Eastern Africa, 1983–1997 , 2014, Emerging infectious diseases.

[90]  L. Yang,et al.  Preliminary estimation of the basic reproduction number of novel coronavirus (2019-nCoV) in China, from 2019 to 2020: A data-driven analysis in the early phase of the outbreak , 2020, International Journal of Infectious Diseases.

[91]  B. Graham,et al.  Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation , 2020, Science.

[92]  Christl A. Donnelly,et al.  Transmission Dynamics, Border Entry Screening, and School Holidays during the 2009 Influenza A (H1N1) Pandemic, China , 2012, Emerging infectious diseases.

[93]  T. Kirikae,et al.  Fully Human Monoclonal Antibody Directed to Proteolytic Cleavage Site in Severe Acute Respiratory Syndrome (SARS) Coronavirus S Protein Neutralizes the Virus in a Rhesus Macaque SARS Model , 2011, The Journal of infectious diseases.

[94]  P. Ng,et al.  SARS in Newborns and Children , 2004, Neonatology.

[95]  G. Simmons,et al.  Characterization of severe acute respiratory syndrome-associated coronavirus (SARS-CoV) spike glycoprotein-mediated viral entry , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[96]  L. Enjuanes,et al.  Structural Bases of Coronavirus Attachment to Host Aminopeptidase N and Its Inhibition by Neutralizing Antibodies , 2012, PLoS pathogens.

[97]  P. Daszak,et al.  Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin , 2018, Nature.

[98]  G. Whittaker,et al.  Host cell entry of Middle East respiratory syndrome coronavirus after two-step, furin-mediated activation of the spike protein , 2014, Proceedings of the National Academy of Sciences.

[99]  G. Whittaker,et al.  Elastase-mediated Activation of the Severe Acute Respiratory Syndrome Coronavirus Spike Protein at Discrete Sites within the S2 Domain , 2010, The Journal of Biological Chemistry.

[100]  Kwok-Hung Chan,et al.  Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[101]  Timothy F. Leslie,et al.  Complexity of the Basic Reproduction Number (R0) , 2019, Emerging infectious diseases.

[102]  P. Woo,et al.  Receptor Usage of a Novel Bat Lineage C Betacoronavirus Reveals Evolution of Middle East Respiratory Syndrome-Related Coronavirus Spike Proteins for Human Dipeptidyl Peptidase 4 Binding , 2018, The Journal of infectious diseases.

[103]  Benjamin J. Cowling,et al.  Comparison of incubation period distribution of human infections with MERS-CoV in South Korea and Saudi Arabia , 2016, Scientific Reports.

[104]  J. Harkness,et al.  A close shave? Performance of P2/N95 respirators in health care workers with facial hair: results of the BEARDS (Adequate Respiratory DefenceS) study. , 2020, The Journal of hospital infection.

[105]  Susanna K. P. Lau,et al.  Coronavirus Genomics and Bioinformatics Analysis , 2010, Viruses.

[106]  B. Bosch,et al.  The Coronavirus Spike Protein Is a Class I Virus Fusion Protein: Structural and Functional Characterization of the Fusion Core Complex , 2003, Journal of Virology.

[107]  E. Souied,et al.  AMD Management During the COVID‐19 Pandemic , 2020, Acta ophthalmologica.

[108]  G. Gao,et al.  A Novel Coronavirus from Patients with Pneumonia in China, 2019 , 2020, The New England journal of medicine.

[109]  Kwok-Hung Chan,et al.  Discovery of Seven Novel Mammalian and Avian Coronaviruses in the Genus Deltacoronavirus Supports Bat Coronaviruses as the Gene Source of Alphacoronavirus and Betacoronavirus and Avian Coronaviruses as the Gene Source of Gammacoronavirus and Deltacoronavirus , 2012, Journal of Virology.

[110]  G. Gao,et al.  Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses , 2016, Trends in Microbiology.

[111]  A. Osterhaus,et al.  Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia. , 2012, The New England journal of medicine.

[112]  A. Gorbalenya,et al.  A planarian nidovirus expands the limits of RNA genome size , 2018, bioRxiv.