Integrated whole-genome sequencing and temporospatial analysis of a continuing Group A Streptococcus epidemic
暂无分享,去创建一个
D. Lin | J. Musser | I. Martin | G. Tyrrell | K. Hari | N. Fittipaldi | D. Low
[1] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[2] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[3] N. Khardori. Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak , 2012 .
[4] R. Lancefield. THE ANTIGENIC COMPLEX OF STREPTOCOCCUS HAEMOLYTICUS : I. DEMONSTRATION OF A TYPE-SPECIFIC SUBSTANCE IN EXTRACTS OF STREPTOCOCCUS HAEMOLYTICUS. , 1927, The Journal of experimental medicine.
[5] Junhua Li,et al. Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. , 2011, The New England journal of medicine.
[6] M. Gilmour,et al. High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak , 2010, BMC Genomics.
[7] R. A. Laurence,et al. Epidemic of group A Streptococcus M/emm59 causing invasive disease in Canada. , 2010, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[8] V. Fischetti,et al. Relationship of M protein genes in group A streptococci. , 1985, Proceedings of the National Academy of Sciences of the United States of America.
[9] James H. Bullard,et al. The origin of the Haitian cholera outbreak strain. , 2011, The New England journal of medicine.
[10] N. Loman,et al. High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity , 2012, Nature Reviews Microbiology.
[11] A. Dasgupta,et al. Evolutionary perspective on the origin of Haitian cholera outbreak strain , 2012, Journal of biomolecular structure & dynamics.
[12] Yuriy Fofanov,et al. Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics , 2010, Proceedings of the National Academy of Sciences.
[13] B. Manjula,et al. Antigenic domains of the streptococcal Pep M5 protein. Localization of epitopes crossreactive with type 6 M protein and identification of a hypervariable region of the M molecule , 1986, The Journal of experimental medicine.
[14] Alex Wong,et al. Evolutionary insight from whole‐genome sequencing of experimentally evolved microbes , 2012, Molecular ecology.
[15] D. Huson,et al. Application of phylogenetic networks in evolutionary studies. , 2006, Molecular biology and evolution.
[16] S. W. Long,et al. Bacterial genomics in infectious disease and the clinical pathology laboratory. , 2012, Archives of pathology & laboratory medicine.
[17] James H. Bullard,et al. Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. , 2011, The New England journal of medicine.
[18] R. Lancefield. THE ANTIGENIC COMPLEX OF STREPTOCOCCUS HAEMOLYTICUS : II. CHEMICAL AND IMMUNOLOGICAL PROPERTIES OF THE PROTEIN FRACTIONS. , 1928, The Journal of experimental medicine.
[19] Steven J. M. Jones,et al. Whole-genome sequencing and social-network analysis of a tuberculosis outbreak. , 2011, The New England journal of medicine.
[20] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[21] R. Olsen,et al. Genomic Analysis of emm59 Group A Streptococcus Invasive Strains, United States , 2012, Emerging infectious diseases.
[22] Thomas D. Otto,et al. Real-time sequencing , 2011, Nature Reviews Microbiology.
[23] Julian Parkhill,et al. Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. , 2012, The New England journal of medicine.
[24] G. Churchward. The two faces of Janus: virulence gene regulation by CovR/S in group A streptococci , 2007, Molecular microbiology.
[25] Carsten O. Daub,et al. TagDust—a program to eliminate artifacts from next generation sequencing data , 2009, Bioinform..
[26] J. Musser,et al. Distinct signatures of diversifying selection revealed by genome analysis of respiratory tract and invasive bacterial populations , 2011, Proceedings of the National Academy of Sciences.
[27] Eric S. Lander,et al. Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing , 2008, Nature Methods.
[28] K. Georgiades. Genomics of epidemic pathogens. , 2012, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
[29] David N. L. Levy,et al. Attack of the Clones , 2011, J. Int. Comput. Games Assoc..
[30] R. Olsen,et al. Full-genome dissection of an epidemic of severe invasive disease caused by a hypervirulent, recently emerged clone of group A Streptococcus. , 2012, The American journal of pathology.
[31] Julian Parkhill,et al. Evidence for several waves of global transmission in the seventh cholera pandemic , 2011, Nature.
[32] James M. Musser,et al. Contribution of Exogenous Genetic Elements to the Group A Streptococcus Metagenome , 2007, PloS one.
[33] Daniel J. Blankenberg,et al. Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists , 2010, Current protocols in molecular biology.
[34] R. Olsen,et al. Molecular mechanisms underlying group A streptococcal pathogenesis , 2009, Cellular microbiology.
[35] Elise R. Hondorp,et al. The Mga virulence regulon: infection where the grass is greener , 2007, Molecular microbiology.
[36] Daniel J. Blankenberg,et al. Galaxy: a platform for interactive large-scale genome analysis. , 2005, Genome research.
[37] Hong Zhang,et al. Role of Mga in group A streptococcal infection at the skin epithelium. , 2008, Microbial pathogenesis.
[38] A. Nekrutenko,et al. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences , 2010, Genome Biology.
[39] Marie-Christine Brun,et al. TreeDyn: towards dynamic graphics and annotations for analyses of trees , 2006, BMC Bioinformatics.
[40] J. Musser,et al. A decade of molecular pathogenomic analysis of group A Streptococcus. , 2009, The Journal of clinical investigation.