Phase separation in fungi
暂无分享,去创建一个
[1] Haopin Liu,et al. The intrinsically disordered region from PP2C phosphatases functions as a conserved CO2 sensor , 2022, Nature Cell Biology.
[2] R. Pappu,et al. A conceptual framework for understanding phase separation and addressing open questions and challenges. , 2022, Molecular cell.
[3] R. Tjian,et al. Tuning levels of low-complexity domain interactions to modulate endogenous oncogenic transcription. , 2022, Molecular cell.
[4] Xiaohua Shen,et al. Phase separation of RNA-binding protein promotes polymerase binding and transcription , 2021, Nature Chemical Biology.
[5] S. McKnight,et al. How do protein domains of low sequence complexity work? , 2021, RNA.
[6] C. Brangwynne,et al. Polycomb condensates can promote epigenetic marks but are not required for sustained chromatin compaction , 2021, Nature Communications.
[7] Jennifer A. Mitchell,et al. Testing the super-enhancer concept , 2021, Nature Reviews Genetics.
[8] Nicolas L. Fawzi,et al. Biophysical studies of phase separation integrating experimental and computational methods. , 2021, Current opinion in structural biology.
[9] D. Pincus,et al. Primordial super-enhancers: heat shock-induced chromatin organization in yeast. , 2021, Trends in cell biology.
[10] D. Drummond,et al. Chaperones directly and efficiently disperse stress-triggered biomolecular condensates , 2021, bioRxiv.
[11] K. Bloom,et al. The rDNA is biomolecular condensate formed by polymer–polymer phase separation and is sequestered in the nucleolus by transcription and R-loops , 2021, Nucleic acids research.
[12] J. Shorter,et al. Combating deleterious phase transitions in neurodegenerative disease. , 2021, Biochimica et biophysica acta. Molecular cell research.
[13] R. Pappu,et al. Deciphering how naturally occurring sequence features impact the phase behaviors of disordered prion-like domains , 2021, bioRxiv.
[14] Ying Xie,et al. Polarisome assembly mediates actin remodeling during polarized yeast and fungal growth , 2021, Journal of Cell Science.
[15] N. Hannett,et al. RNA-Mediated Feedback Control of Transcriptional Condensates , 2020, Cell.
[16] S. Ghaemmaghami,et al. Redox-mediated regulation of an evolutionarily conserved cross-β structure formed by the TDP43 low complexity domain , 2020, Proceedings of the National Academy of Sciences.
[17] M. Polymenidou,et al. Phase Separation and Neurodegenerative Diseases: A Disturbance in the Force. , 2020, Developmental cell.
[18] Yong Chen,et al. Taf14 recognizes a common motif in transcriptional machineries and facilitates their clustering by phase separation , 2020, Nature Communications.
[19] E. Spruijt,et al. Liquid–Liquid Phase Separation in Crowded Environments , 2020, International journal of molecular sciences.
[20] A. Gladfelter,et al. RNA contributions to the form and function of biomolecular condensates , 2020, Nature Reviews Molecular Cell Biology.
[21] Z. Wang,et al. Liquid–liquid phase separation in autophagy , 2020, The Journal of cell biology.
[22] Ilya J. Finkelstein,et al. Epigenetic Cell Fate in Candida albicans is Controlled by Transcription Factor Condensates Acting at Super-Enhancer-Like Elements , 2020, Nature Microbiology.
[23] T. Lenstra,et al. RNA Pol II Length and Disorder Enable Cooperative Scaling of Transcriptional Bursting. , 2020, Molecular cell.
[24] R. Best,et al. Biomolecular Phase Separation: From Molecular Driving Forces to Macroscopic Properties. , 2020, Annual review of physical chemistry.
[25] R. Pappu,et al. RNA-Induced Conformational Switching and Clustering of G3BP Drive Stress Granule Assembly by Condensation , 2020, Cell.
[26] Nicolas L. Fawzi,et al. TDP-43 α-helical structure tunes liquid–liquid phase separation and function , 2020, Proceedings of the National Academy of Sciences.
[27] R. Pappu,et al. Valence and patterning of aromatic residues determine the phase behavior of prion-like domains , 2020, Science.
[28] T. Ando,et al. Phase separation organizes the site of autophagosome formation , 2020, Nature.
[29] Y. Fujioka,et al. Liquidity Is a Critical Determinant for Selective Autophagy of Protein Condensates. , 2020, Molecular cell.
[30] C. Allis,et al. Histone Modifications Regulate Chromatin Compartmentalization by Contributing to a Phase Separation Mechanism. , 2019, Molecular cell.
[31] B. Portz,et al. Switching Condensates: The CTD Code Goes Liquid. , 2019, Trends in biochemical sciences.
[32] W. Hong,et al. Polarisome scaffolder Spa2-mediated macromolecular condensation of Aip5 for actin polymerization , 2019, Nature Communications.
[33] J. Shorter,et al. Mining Disaggregase Sequence Space to Safely Counter TDP-43, FUS, and α-Synuclein Proteotoxicity , 2019, Cell reports.
[34] Karim Mekhail,et al. Phase Separation as a Melting Pot for DNA Repeats. , 2019, Trends in genetics : TIG.
[35] J. Dorweiler,et al. The three faces of Sup35 , 2019, Yeast.
[36] N. Hannett,et al. Pol II phosphorylation regulates a switch between transcriptional and splicing condensates , 2019, Nature.
[37] Xiaohua Shen,et al. RNA Targets Ribogenesis Factor WDR43 to Chromatin for Transcription and Pluripotency Control. , 2019, Molecular cell.
[38] P. Tyurin-Kuzmin,et al. Analysis of novel hyperosmotic shock response suggests ‘beads in liquid’ cytosol structure , 2019, Biology Open.
[39] Nicolas L. Fawzi,et al. Molecular interactions underlying liquid-liquid phase separation of the FUS low complexity domain , 2019, Nature Structural & Molecular Biology.
[40] R. Loewith,et al. TOR Signaling Is Going through a Phase. , 2019, Cell metabolism.
[41] B. Tu,et al. Redox State Controls Phase Separation of the Yeast Ataxin-2 Protein via Reversible Oxidation of Its Methionine-Rich Low-Complexity Domain , 2019, Cell.
[42] B. Tu,et al. Yeast Ataxin-2 Forms an Intracellular Condensate Required for the Inhibition of TORC1 Signaling during Respiratory Growth , 2019, Cell.
[43] E. Gazit,et al. Yeast Models for the Study of Amyloid-Associated Disorders and Development of Future Therapy , 2019, Front. Mol. Biosci..
[44] R. Parker,et al. Multicolor single-molecule tracking of mRNA interactions with RNP granules , 2018, Nature Cell Biology.
[45] D. Weil,et al. RNA is a critical element for the sizing and the composition of phase-separated RNA–protein condensates , 2018, Nature Communications.
[46] P. Ivanov,et al. Stress Granules and Processing Bodies in Translational Control. , 2018, Cold Spring Harbor perspectives in biology.
[47] N. Hannett,et al. Enhancer features that drive formation of transcriptional condensates , 2018, bioRxiv.
[48] N. Hannett,et al. Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains , 2018, Cell.
[49] Gangming Zhang,et al. mTOR Regulates Phase Separation of PGL Granules to Modulate Their Autophagic Degradation , 2018, Cell.
[50] D. Pincus,et al. Heat Shock Factor 1 Drives Intergenic Association of Its Target Gene Loci upon Heat Shock , 2018, bioRxiv.
[51] P. Cramer,et al. RNA polymerase II clustering through carboxy-terminal domain phase separation , 2018, Nature Structural & Molecular Biology.
[52] Daniel S. Day,et al. Coactivator condensation at super-enhancers links phase separation and gene control , 2018, Science.
[53] Charles H. Li,et al. Mediator and RNA polymerase II clusters associate in transcription-dependent condensates , 2018, Science.
[54] R. Pappu,et al. A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins , 2018, Cell.
[55] J. Groves,et al. mTORC1 Controls Phase Separation and the Biophysical Properties of the Cytoplasm by Tuning Crowding , 2018, Cell.
[56] A. Hyman,et al. Different Material States of Pub1 Condensates Define Distinct Modes of Stress Adaptation and Recovery. , 2018, Cell reports.
[57] Nicolas L. Fawzi,et al. Protein Phase Separation: A New Phase in Cell Biology. , 2018, Trends in cell biology.
[58] X. Darzacq,et al. Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II , 2018, Nature.
[59] P. Tomançak,et al. RNA buffers the phase separation behavior of prion-like RNA binding proteins , 2018, Science.
[60] Yang Luo,et al. P-Bodies: Composition, Properties, and Functions , 2018, Biochemistry.
[61] R. Pappu,et al. Phase separation of a yeast prion protein promotes cellular fitness , 2018, Science.
[62] D. Thiele,et al. Regulation of heat shock transcription factors and their roles in physiology and disease , 2017, Nature Reviews Molecular Cell Biology.
[63] R. Tycko,et al. Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains , 2017, Cell.
[64] C. Brangwynne,et al. Liquid phase condensation in cell physiology and disease , 2017, Science.
[65] Josh Lawrimore,et al. Enrichment of dynamic chromosomal crosslinks drive phase separation of the nucleolus , 2017, Nucleic acids research.
[66] J. Yates,et al. Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress. , 2017, Cell reports.
[67] Mustafa Mir,et al. Phase separation drives heterochromatin domain formation , 2017, Nature.
[68] J. Shorter. Designer protein disaggregases to counter neurodegenerative disease. , 2017, Current opinion in genetics & development.
[69] Alma L. Burlingame,et al. Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin , 2017, Nature.
[70] O. Kurzai,et al. CO2 sensing in fungi: at the heart of metabolic signaling , 2017, Current Genetics.
[71] R. Sprangers,et al. A synergistic network of interactions promotes the formation of in vitro processing bodies and protects mRNA against decapping , 2017, Nucleic acids research.
[72] A. Stark,et al. Combinatorial function of transcription factors and cofactors. , 2017, Current opinion in genetics & development.
[73] Joshua A. Riback,et al. Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response , 2017, Cell.
[74] R. Young,et al. A Phase Separation Model for Transcriptional Control , 2017, Cell.
[75] Anthony A. Hyman,et al. Biomolecular condensates: organizers of cellular biochemistry , 2017, Nature Reviews Molecular Cell Biology.
[76] N. Noda,et al. Structural Biology of the Cvt Pathway. , 2017, Journal of molecular biology.
[77] Nicolas L. Fawzi,et al. ALS Mutations Disrupt Phase Separation Mediated by α-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain. , 2016, Structure.
[78] R. Parker,et al. Compositional Control of Phase-Separated Cellular Bodies , 2016, Cell.
[79] Hironori Suzuki,et al. The Intrinsically Disordered Protein Atg13 Mediates Supramolecular Assembly of Autophagy Initiation Complexes. , 2016, Developmental cell.
[80] David R. Liu,et al. Sequence Determinants of Intracellular Phase Separation by Complex Coacervation of a Disordered Protein. , 2016, Molecular cell.
[81] F. Inagaki,et al. Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates. , 2016, Cell reports.
[82] Diana M. Mitrea,et al. Coexisting Liquid Phases Underlie Nucleolar Subcompartments , 2016, Cell.
[83] Anthony Barsic,et al. ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure , 2016, Cell.
[84] Diana M. Mitrea,et al. Phase separation in biology; functional organization of a higher order , 2016, Cell Communication and Signaling.
[85] Nicolas L. Fawzi,et al. Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II. , 2015, Molecular cell.
[86] Erin M. Langdon,et al. RNA Controls PolyQ Protein Phase Transitions. , 2015, Molecular cell.
[87] Alexander D. Johnson,et al. Intersecting transcription networks constrain gene regulatory evolution , 2015, Nature.
[88] Yayoi Kimura,et al. Atg13 HORMA domain recruits Atg9 vesicles during autophagosome formation , 2015, Proceedings of the National Academy of Sciences.
[89] A. Gladfelter,et al. PolyQ-dependent RNA–protein assemblies control symmetry breaking , 2015, The Journal of cell biology.
[90] R. Young,et al. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element , 2014, Science.
[91] A Keith Dunker,et al. Intrinsically disordered proteins and intrinsically disordered protein regions. , 2014, Annual review of biochemistry.
[92] R. Sprangers,et al. In Vitro Reconstitution of a Cellular Phase-Transition Process that Involves the mRNA Decapping Machinery , 2014, Angewandte Chemie.
[93] C. O’Hern,et al. The Bacterial Cytoplasm Has Glass-like Properties and Is Fluidized by Metabolic Activity , 2014, Cell.
[94] C. Brangwynne. Phase transitions and size scaling of membrane-less organelles , 2013, The Journal of cell biology.
[95] Polly M. Fordyce,et al. Structure of the transcriptional network controlling white‐opaque switching in Candida albicans , 2013, Molecular microbiology.
[96] S. Beyhan,et al. A Temperature-Responsive Network Links Cell Shape and Virulence Traits in a Primary Fungal Pathogen , 2013, PLoS biology.
[97] M. Borsuk,et al. Protein aggregation behavior regulates cyclin transcript localization and cell-cycle control. , 2013, Developmental cell.
[98] Rie Ichikawa,et al. Atg9 vesicles are an important membrane source during early steps of autophagosome formation , 2012, The Journal of cell biology.
[99] Jimin Pei,et al. Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels , 2012, Cell.
[100] Alexander D. Johnson,et al. A Recently Evolved Transcriptional Network Controls Biofilm Development in Candida albicans , 2012, Cell.
[101] B. Tu,et al. Selective regulation of autophagy by the Iml1-Npr2-Npr3 complex in the absence of nitrogen starvation , 2011, Molecular biology of the cell.
[102] A. Gitler,et al. Molecular Determinants and Genetic Modifiers of Aggregation and Toxicity for the ALS Disease Protein FUS/TLS , 2011, PLoS biology.
[103] John Q. Trojanowski,et al. Ataxin-2 intermediate-length polyglutamine expansions are associated with increased risk for ALS , 2010, Nature.
[104] Reinhard Dechant,et al. Cytosolic pH is a second messenger for glucose and regulates the PKA pathway through V‐ATPase , 2010, The EMBO journal.
[105] Julie Grantham,et al. The Polarisome Is Required for Segregation and Retrograde Transport of Protein Aggregates , 2010, Cell.
[106] Yoshiaki Kamada,et al. Dynamics and diversity in autophagy mechanisms: lessons from yeast , 2009, Nature Reviews Molecular Cell Biology.
[107] S. Brul,et al. In vivo measurement of cytosolic and mitochondrial pH using a pH-sensitive GFP derivative in Saccharomyces cerevisiae reveals a relation between intracellular pH and growth. , 2009, Microbiology.
[108] B. Tuch,et al. Interlocking Transcriptional Feedback Loops Control White-Opaque Switching in Candida albicans , 2007, PLoS biology.
[109] Mark Gerstein,et al. Divergence of transcription factor binding sites across related yeast species. , 2007, Science.
[110] P. Anderson,et al. RNA granules , 2006, The Journal of cell biology.
[111] M. Thiry,et al. Birth of a nucleolus: the evolution of nucleolar compartments. , 2005, Trends in cell biology.