GrowthInvolved in Aerobic and Anoxic Shewanella oneidensis MR-1 Sensory Box
暂无分享,去创建一个
Jeffrey A. Gralnick | Dawn M. Klingeman | P. Joachimiak | Jizhong Zhou | Belén Naranjo | J. Kurowski | Tingfen Yan | Jizhong Zhou | D. Klingeman | J. Gralnick | Tingfen Yan | B. Naranjo | J. Kurowski | P. Joachimiak
[1] G. Sawers,et al. Characterization of Transcriptional Regulation of Shewanella frigidimarina Fe(III)-Induced Flavocytochrome c Reveals a Novel Iron-Responsive Gene Regulation System , 2003, Journal of bacteriology.
[2] K. Lund,et al. Association-dissociation behavior and subunit structure of heat-released nitrate reductase from Escherichia coli. , 1976, The Journal of biological chemistry.
[3] Gordon A Anderson,et al. Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[4] Dorothea K. Thompson,et al. Transcriptome Analysis of Shewanella oneidensis MR-1 in Response to Elevated Salt Conditions , 2005, Journal of bacteriology.
[5] D. Roop,et al. Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. , 1995, Gene.
[6] L. M. Markillie,et al. Overexpression of multi-heme C-type cytochromes. , 2005, BioTechniques.
[7] B. Giese,et al. Cell cycle-dependent dynamic localization of a bacterial response regulator with a novel di-guanylate cyclase output domain. , 2004, Genes & development.
[8] Andreas Möglich,et al. Structure and signaling mechanism of Per-ARNT-Sim domains. , 2009, Structure.
[9] Michael E. Taveirne,et al. The Dual-Functioning Fumarate Reductase Is the Sole Succinate:Quinone Reductase in Campylobacter jejuni and Is Required for Full Host Colonization , 2009, Journal of bacteriology.
[10] Grigoriy E. Pinchuk,et al. Involvement of a Membrane-Bound Class III Adenylate Cyclase in Regulation of Anaerobic Respiration in Shewanella oneidensis MR-1 , 2009, Journal of bacteriology.
[11] Robert D. Finn,et al. Pfam: clans, web tools and services , 2005, Nucleic Acids Res..
[12] Inna Dubchak,et al. MicrobesOnline: an integrated portal for comparative and functional genomics , 2009, Nucleic Acids Res..
[13] Michael Y. Galperin,et al. Bacterial signal transduction network in a genomic perspective. , 2004, Environmental microbiology.
[14] C. Myers,et al. Replication of plasmids with the p15A origin in Shewanella putrefaciens MR‐1 , 1997, Letters in applied microbiology.
[15] S. Chapman,et al. Sequence of the gene encoding flavocytochrome c from Shewanella putrefaciens: a tetraheme flavoenzyme that is a soluble fumarate reductase related to the membrane-bound enzymes from other bacteria. , 1992, Biochemistry.
[16] Correlation of PAS domains with electron transport-associated proteins in completely sequenced microbial genomes. , 1998, Molecular microbiology.
[17] P. Salinas,et al. Quaternary structure changes in a second Per‐Arnt‐Sim domain mediate intramolecular redox signal relay in the NifL regulatory protein , 2010, Molecular microbiology.
[18] Andrew J. Schmidt,et al. The Ubiquitous Protein Domain EAL Is a Cyclic Diguanylate-Specific Phosphodiesterase: Enzymatically Active and Inactive EAL Domains , 2005, Journal of bacteriology.
[19] O. Gascuel,et al. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.
[20] D. Newman,et al. Genetic identification of a respiratory arsenate reductase , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[21] Markus Meuwly,et al. Allosteric Control of Cyclic di-GMP Signaling* , 2006, Journal of Biological Chemistry.
[22] A. Osterman,et al. Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization , 2009, Proceedings of the National Academy of Sciences.
[23] O. White,et al. Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis , 2002, Nature Biotechnology.
[24] S. Austin,et al. Azotobacter vinelandii NIFL is a flavoprotein that modulates transcriptional activation of nitrogen-fixation genes via a redox-sensitive switch. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[25] A. Rosenzweig,et al. Structure of the redox sensor domain of Methylococcus capsulatus (Bath) MmoS. , 2009, Biochemistry.
[26] M. Sternberg,et al. Protein structure prediction on the Web: a case study using the Phyre server , 2009, Nature Protocols.
[27] J. Blatny,et al. Construction and use of a versatile set of broad-host-range cloning and expression vectors based on the RK2 replicon , 1997, Applied and environmental microbiology.
[28] S. Mesa,et al. NifA is required for maximal expression of denitrification genes in Bradyrhizobium japonicum. , 2010, Environmental microbiology.
[29] S. Mongkolsuk,et al. Construction and characterization of regulated L-arabinose-inducible broad host range expression vectors in Xanthomonas. , 1999, FEMS microbiology letters.
[30] Kenneth H. Nealson,et al. Microarray Transcription Profiling of a Shewanella oneidensis etrA Mutant , 2002, Journal of bacteriology.
[31] A. Beliaev,et al. Involvement of Cyclic AMP (cAMP) and cAMP Receptor Protein in Anaerobic Respiration of Shewanella oneidensis , 2003, Journal of bacteriology.
[32] S. Brunak,et al. Locating proteins in the cell using TargetP, SignalP and related tools , 2007, Nature Protocols.
[33] Yang Zhang,et al. I-TASSER: a unified platform for automated protein structure and function prediction , 2010, Nature Protocols.
[34] Peer Bork,et al. SMART 6: recent updates and new developments , 2008, Nucleic Acids Res..
[35] K. Moffat,et al. Structure of the redox sensor domain of Azotobacter vinelandii NifL at atomic resolution: signaling, dimerization, and mechanism. , 2007, Biochemistry.
[36] M. Gilles-Gonzalez,et al. Dos, a heme-binding PAS protein from Escherichia coli, is a direct oxygen sensor. , 2000, Biochemistry.
[37] A. G. Bobrov,et al. HmsP, a putative phosphodiesterase, and HmsT, a putative diguanylate cyclase, control Hms‐dependent biofilm formation in Yersinia pestis , 2004, Molecular microbiology.
[38] Dan Coursolle,et al. Modularity of the Mtr respiratory pathway of Shewanella oneidensis strain MR‐1 , 2010, Molecular microbiology.
[39] D. Newman,et al. Anaerobic regulation by an atypical Arc system in Shewanella oneidensis , 2005, Molecular microbiology.
[40] Birgit Eisenhaber,et al. On filtering false positive transmembrane protein predictions. , 2002, Protein engineering.
[41] A. Spormann,et al. Periplasmic Electron Transfer via the c-Type Cytochromes MtrA and FccA of Shewanella oneidensis MR-1 , 2009, Applied and Environmental Microbiology.
[42] H. Sondermann,et al. Vibrio cholerae VpsT Regulates Matrix Production and Motility by Directly Sensing Cyclic di-GMP , 2010, Science.
[43] Kay Hofmann,et al. Tmbase-A database of membrane spanning protein segments , 1993 .
[44] S. Hall,et al. Growth of Campylobacter jejuni Supported by Respiration of Fumarate, Nitrate, Nitrite, Trimethylamine-N-Oxide, or Dimethyl Sulfoxide Requires Oxygen , 2002, Journal of bacteriology.
[45] Søren Brunak,et al. Prediction of twin-arginine signal peptides , 2005, BMC Bioinformatics.
[46] Rolf Apweiler,et al. Evaluation of methods for the prediction of membrane spanning regions , 2001, Bioinform..
[47] Dorothea K. Thompson,et al. Transcriptomic and Proteomic Characterization of the Fur Modulon in the Metal-Reducing Bacterium Shewanella oneidensis , 2004, Journal of bacteriology.
[48] Jack Snoeyink,et al. Nucleic Acids Research Advance Access published April 22, 2007 MolProbity: all-atom contacts and structure validation for proteins and nucleic acids , 2007 .
[49] Alyssa M. Redding,et al. Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation , 2009, Nucleic acids research.
[50] U. Jenal. Cyclic di-guanosine-monophosphate comes of age: a novel secondary messenger involved in modulating cell surface structures in bacteria? , 2004, Current opinion in microbiology.
[51] Pascal Benkert,et al. QMEAN server for protein model quality estimation , 2009, Nucleic Acids Res..
[52] A. Spormann,et al. Control of Formation and Cellular Detachment from Shewanella oneidensis MR-1 Biofilms by Cyclic di-GMP , 2006, Journal of bacteriology.
[53] Liisa Holm,et al. Searching protein structure databases with DaliLite v.3 , 2008, Bioinform..
[54] R. Samudrala,et al. Pseudomonas aeruginosa uses a cyclic-di-GMP-regulated adhesin to reinforce the biofilm extracellular matrix , 2010, Molecular microbiology.
[55] I. Zhulin,et al. PAS Domains: Internal Sensors of Oxygen, Redox Potential, and Light , 1999, Microbiology and Molecular Biology Reviews.
[56] Morten Nielsen,et al. CPHmodels-3.0—remote homology modeling using structure-guided sequence profiles , 2010, Nucleic Acids Res..
[57] Manfred J. Sippl,et al. Thirty years of environmental health research--and growing. , 1996, Nucleic Acids Res..
[58] C. Ponting,et al. PAS: a multifunctional domain family comes to light , 1997, Current Biology.