A longer isoform of Stim1 is a negative SOCE regulator but increases cAMP‐modulated NFAT signaling

Alternative splicing is a potent modifier of protein function. Stromal interaction molecule 1 (Stim1) is the essential activator of store‐operated Ca2+ entry (SOCE) triggering activation of transcription factors. Here, we characterize Stim1A, a splice variant with an additional 31 amino acid domain inserted in frame within its cytosolic domain. Prominent expression of exon A is found in astrocytes, heart, kidney, and testes. Full‐length Stim1A functions as a dominant‐negative regulator of SOCE and ICRAC, facilitating sequence‐specific fast calcium‐dependent inactivation and destabilizing gating of Orai channels. Downregulation or absence of native Stim1A results in increased SOCE. Despite reducing SOCE, Stim1A leads to increased NFAT translocation. Differential proteomics revealed an interference of Stim1A with the cAMP‐SOCE crosstalk by altered modulation of phosphodiesterase 8 (PDE8), resulting in reduced cAMP degradation and increased PIP5K activity, facilitating NFAT activation. Our study uncovers a hitherto unknown mechanism regulating NFAT activation and indicates that cell‐type‐specific splicing of Stim1 is a potent means to regulate the NFAT signalosome and cAMP‐SOCE crosstalk.

[1]  M. Zaccolo,et al.  AKAP79 Orchestrates a Cyclic AMP Signalosome Adjacent to Orai1 Ca2+ Channels , 2021, Function.

[2]  M. Hediger,et al.  The N terminus of Orai1 couples to the AKAP79 signaling complex to drive NFAT1 activation by local Ca2+ entry , 2021, Proceedings of the National Academy of Sciences.

[3]  D. Bruns,et al.  A short isoform of STIM1 confers frequency-dependent synaptic enhancement. , 2021, Cell reports.

[4]  P. Rosenberg,et al.  SOCE in the cardiomyocyte: the secret is in the chambers , 2021, Pflügers Archiv - European Journal of Physiology.

[5]  I. Derler,et al.  The Orai Pore Opening Mechanism , 2021, International journal of molecular sciences.

[6]  Peter B. McGarvey,et al.  UniProt: the universal protein knowledgebase in 2021 , 2020, Nucleic Acids Res..

[7]  S. Feske,et al.  STIM2 targets Orai1/STIM1 to the AKAP79 signaling complex and confers coupling of Ca2+ entry with NFAT1 activation , 2020, Proceedings of the National Academy of Sciences.

[8]  M. Prakriya,et al.  Molecular basis of allosteric Orai1 channel activation by STIM1 , 2020, The Journal of physiology.

[9]  Annette Lis,et al.  Alternative splicing switches STIM1 targeting to specialized membrane contact sites and modifies SOCE , 2020, bioRxiv.

[10]  W. Han,et al.  Optogenetic engineering to probe the molecular choreography of STIM1-mediated cell signaling , 2020, Nature Communications.

[11]  Shenyuan L. Zhang,et al.  STIM1 interacts with termini of Orai channels in a sequential manner. , 2020, Journal of cell science.

[12]  D. Peckys,et al.  Detecting single ORAI1 proteins within the plasma membrane reveals higher-order channel complexes , 2019, Journal of Cell Science.

[13]  R. Pomès,et al.  The basic residues in the Orai1 channel inner pore promote opening of the outer hydrophobic gate , 2019, The Journal of general physiology.

[14]  Chan Young Park,et al.  Orai1 inhibitor STIM2β regulates myogenesis by controlling SOCE dependent transcriptional factors , 2019, Scientific Reports.

[15]  S. Feske CRAC channels and disease - From human CRAC channelopathies and animal models to novel drugs. , 2019, Cell calcium.

[16]  Anja M. Billing,et al.  Remodeling of ER–plasma membrane contact sites but not STIM1 phosphorylation inhibits Ca2+ influx in mitosis , 2019, Proceedings of the National Academy of Sciences.

[17]  J. Putney,et al.  A calcium/cAMP signaling loop at the ORAI1 mouth drives channel inactivation to shape NFAT induction , 2019, Nature Communications.

[18]  G. D. da Rocha,et al.  Occurrence of the potent mutagens 2- nitrobenzanthrone and 3-nitrobenzanthrone in fine airborne particles , 2019, Scientific Reports.

[19]  A. Michelucci,et al.  Role of STIM1/ORAI1-mediated store-operated Ca2+ entry in skeletal muscle physiology and disease. , 2018, Cell calcium.

[20]  Martin Eisenacher,et al.  The PRIDE database and related tools and resources in 2019: improving support for quantification data , 2018, Nucleic Acids Res..

[21]  The UniProt Consortium,et al.  UniProt: a worldwide hub of protein knowledge , 2018, Nucleic Acids Res..

[22]  Timo Mühlhaus,et al.  Absolute Quantification of Major Photosynthetic Protein Complexes in Chlamydomonas reinhardtii Using Quantification Concatamers (QconCATs) , 2018, Front. Plant Sci..

[23]  Torsten Schwede,et al.  SWISS-MODEL: homology modelling of protein structures and complexes , 2018, Nucleic Acids Res..

[24]  B. Niemeyer,et al.  Cross-linking of Orai1 channels by STIM proteins , 2018, Proceedings of the National Academy of Sciences.

[25]  S. Long,et al.  Structures reveal opening of the store-operated calcium channel Orai , 2018, bioRxiv.

[26]  Vivek T. Natarajan,et al.  STIM1 activation of adenylyl cyclase 6 connects Ca2+ and cAMP signaling during melanogenesis , 2018, The EMBO journal.

[27]  T. Nagai,et al.  Red fluorescent cAMP indicator with increased affinity and expanded dynamic range , 2018, Scientific Reports.

[28]  C. Romanin,et al.  Authentic CRAC channel activity requires STIM1 and the conserved portion of the Orai N terminus , 2017, The Journal of Biological Chemistry.

[29]  Martina Kunkl,et al.  ISA-2011B, a Phosphatidylinositol 4-Phosphate 5-Kinase α Inhibitor, Impairs CD28-Dependent Costimulatory and Pro-inflammatory Signals in Human T Lymphocytes , 2017, Front. Immunol..

[30]  Kevin W. Eliceiri,et al.  ImageJ2: ImageJ for the next generation of scientific image data , 2017, BMC Bioinformatics.

[31]  M. Trebak,et al.  The STIM1-binding site nexus remotely controls Orai1 channel gating , 2016, Nature Communications.

[32]  H. Rieger,et al.  Thiol dependent intramolecular locking of Orai1 channels , 2016, Scientific Reports.

[33]  R. Thrall,et al.  Differential Expression and Function of PDE8 and PDE4 in Effector T cells: Implications for PDE8 as a Drug Target in Inflammation , 2016, Front. Pharmacol..

[34]  G C P van Zundert,et al.  The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes. , 2016, Journal of molecular biology.

[35]  Richard S Lewis,et al.  The inactivation domain of STIM1 is functionally coupled with the Orai1 pore to enable Ca2+-dependent inactivation , 2016, The Journal of general physiology.

[36]  S. Feske,et al.  Diseases caused by mutations in ORAI1 and STIM1 , 2015, Annals of the New York Academy of Sciences.

[37]  Richard S Lewis,et al.  Store-Operated Calcium Channels. , 2015, Physiological reviews.

[38]  N. Loktionova,et al.  STIM1 dimers undergo unimolecular coupling to activate Orai1 channels , 2015, Nature Communications.

[39]  Gary R. Mirams,et al.  Ca2+ Channel Re-localization to Plasma-Membrane Microdomains Strengthens Activation of Ca2+-Dependent Nuclear Gene Expression , 2015, Cell reports.

[40]  R. Dolmetsch,et al.  Alternative splicing converts STIM2 from an activator to an inhibitor of store-operated calcium channels , 2015, The Journal of cell biology.

[41]  V. Helms,et al.  A STIM2 splice variant negatively regulates store-operated calcium entry , 2015, Nature Communications.

[42]  Marco Y. Hein,et al.  Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ * , 2014, Molecular & Cellular Proteomics.

[43]  A. Parekh,et al.  Dynamic Assembly of a Membrane Signaling Complex Enables Selective Activation of NFAT by Orai1 , 2014, Current Biology.

[44]  C. Romanin,et al.  The Extended Transmembrane Orai1 N-terminal (ETON) Region Combines Binding Interface and Gate for Orai1 Activation by STIM1*♦ , 2013, The Journal of Biological Chemistry.

[45]  M. Prakriya,et al.  The C‐ and N‐terminal STIM1 binding sites on Orai1 are required for both trapping and gating CRAC channels , 2013, The Journal of physiology.

[46]  M. Madesh,et al.  STIM proteins: dynamic calcium signal transducers , 2012, Nature Reviews Molecular Cell Biology.

[47]  X. Yang,et al.  Structural and mechanistic insights into the activation of Stromal interaction molecule 1 (STIM1) , 2012, Proceedings of the National Academy of Sciences.

[48]  C. Bader,et al.  STIM1L is a new actin-binding splice variant involved in fast repetitive Ca2+ release , 2011, The Journal of cell biology.

[49]  A. Parekh,et al.  Selective Activation of the Transcription Factor NFAT1 by Calcium Microdomains near Ca2+ Release-activated Ca2+ (CRAC) Channels* , 2011, The Journal of Biological Chemistry.

[50]  R. Penner,et al.  A single lysine in the N-terminal region of store-operated channels is critical for STIM1-mediated gating , 2010, The Journal of general physiology.

[51]  Anjana Rao,et al.  NFAT, immunity and cancer: a transcription factor comes of age , 2010, Nature Reviews Immunology.

[52]  H. Drissi,et al.  Parathyroid Hormone Induction of Cyclooxygenase-2 in Murine Osteoblasts: Role of the Calcium-Calcineurin-NFAT Pathway , 2009, Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research.

[53]  C. Romanin,et al.  Molecular Determinants of the Coupling between STIM1 and Orai Channels , 2009, The Journal of Biological Chemistry.

[54]  M. Mann,et al.  MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.

[55]  E. Lamperti,et al.  Dual functions for the endoplasmic reticulum calcium sensors STIM1 and STIM2 in T cell activation and tolerance , 2008, Nature Immunology.

[56]  Kees Jalink,et al.  Correcting confocal acquisition to optimize imaging of fluorescence resonance energy transfer by sensitized emission. , 2004, Biophysical journal.

[57]  M. Tremblay,et al.  Treatment of Human T Cells with Bisperoxovanadium Phosphotyrosyl Phosphatase Inhibitors Leads to Activation of Cyclooxygenase-2 Gene* , 2003, The Journal of Biological Chemistry.

[58]  C. Dominguez,et al.  HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. , 2003, Journal of the American Chemical Society.

[59]  A. Raina,et al.  The role of cell cycle‐mediated events in Alzheimer's disease , 1999, International journal of experimental pathology.

[60]  A. Thorburn,et al.  Membrane‐targeting sequences on AKAP79 bind phosphatidylinositol‐4,5‐bisphosphate , 1998, The EMBO journal.

[61]  T. Takenawa,et al.  Activation of phosphatidylinositol kinase and phosphatidylinositol-4-phosphate kinase by cAMP in Saccharomyces cerevisiae. , 1989, The Journal of biological chemistry.

[62]  E. Quist,et al.  Muscarinic receptor stimulated phosphoinositide turnover in cardiac atrial tissue. , 1987, Biochemical pharmacology.

[63]  N. Loktionova,et al.  The STIM-Orai Pathway: Conformational Coupling Between STIM and Orai in the Activation of Store-Operated Ca2+ Entry. , 2017, Advances in experimental medicine and biology.

[64]  Richard S Lewis,et al.  The inactivation domain of STIM 1 is functionally coupled with the Orai 1 pore to enable Ca 2 +-dependent inactivation , 2016 .

[65]  C. Bader,et al.  STIM 1 L is a new actin-binding splice variant involved in fast repetitive Ca 2 + release , 2011 .

[66]  T. N. Bhat,et al.  The Protein Data Bank , 2000, Nucleic Acids Res..

[67]  P. Hogan,et al.  Transcription factors of the NFAT family: regulation and function. , 1997, Annual review of immunology.