Directed evolution of an enantioselective lipase.

BACKGROUND The biocatalytic production of enantiopure compounds is of steadily increasing importance to the chemical and biotechnological industry. In most cases, however, it is impossible to identify an enzyme that possesses the desired enantioselectivity. Therefore, there is a strong need to create by molecular biological methods novel enzymes which display high enantioselectivity. RESULTS A bacterial lipase from Pseudomonas aeruginosa (PAL) was evolved to catalyze with high enantioselectivity the hydrolysis of the chiral model substrate 2-methyldecanoic acid p-nitrophenyl ester. Successive rounds of random mutagenesis by ep-PCR and saturation mutagenesis resulted in an increase in enantioselectivity from E=1.1 for the wild-type enzyme to E=25.8 for the best variant which carried five amino acid substitutions. The recently solved three-dimensional structure of PAL allowed us to analyze the structural consequences of these substitutions. CONCLUSIONS A highly enantioselective lipase was created by increasing the flexibility of distinct loops of the enzyme. Our results demonstrate that enantioselective enzymes can be created by directed evolution, thereby opening up a large area of novel applications in biotechnology.

[1]  Arnold L. Demain,et al.  Manual of Industrial Microbiology and Biotechnology , 1986 .

[2]  D. Hanahan Studies on transformation of Escherichia coli with plasmids. , 1983, Journal of molecular biology.

[3]  B. Dijkstra,et al.  Bacterial lipases for biotechnological applications , 1997 .

[4]  U. Winkler,et al.  Glycogen, hyaluronate, and some other polysaccharides greatly enhance the formation of exolipase by Serratia marcescens , 1979, Journal of bacteriology.

[5]  Uwe T. Bornscheuer,et al.  Biotransformations with Lipases , 2001 .

[6]  D. V. van Aalten,et al.  Dynamics of proteins in different solvent systems: analysis of essential motion in lipases. , 1996, Biophysical journal.

[7]  F. Arnold,et al.  Recombination and chimeragenesis by in vitro heteroduplex formation and in vivo repair. , 1999, Nucleic acids research.

[8]  F. Arnold,et al.  Functional and nonfunctional mutations distinguished by random recombination of homologous genes. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[9]  E. Jacobsen,et al.  Comprehensive Asymmetric Catalysis I–III , 1999 .

[10]  Y Li,et al.  The open conformation of a Pseudomonas lipase. , 1997, Structure.

[11]  F. Arnold,et al.  Random-priming in vitro recombination: an effective tool for directed evolution. , 1998, Nucleic acids research.

[12]  H. Stunnenberg,et al.  Improved method for PCR-mediated site-directed mutagenesis. , 1994, Nucleic acids research.

[13]  R. Kazlauskas,et al.  QUANTITATIVE SCREENING OF HYDROLASE LIBRARIES USING PH INDICATORS: IDENTIFYING ACTIVE AND ENANTIOSELECTIVE HYDROLASES , 1998 .

[14]  D. Tessier,et al.  Identification of residues essential for differential fatty acyl specificity of Geotrichum candidum lipases I and II. , 1997, Biochemistry.

[15]  F. Arnold,et al.  Directed evolution of biocatalysts. , 1999, Current opinion in chemical biology.

[16]  F. Arnold,et al.  Optimizing industrial enzymes by directed evolution. , 1997, Advances in biochemical engineering/biotechnology.

[17]  W. Stemmer Rapid evolution of a protein in vitro by DNA shuffling , 1994, Nature.

[18]  Manfred T Reetz,et al.  Time-Resolved IR-Thermographic Detection and Screening of Enantioselectivity in Catalytic Reactions. , 1998, Angewandte Chemie.

[19]  Frances H. Arnold,et al.  Molecular evolution by staggered extension process (StEP) in vitro recombination , 1998, Nature Biotechnology.

[20]  R. Sheldon Chirotechnology: Industrial Synthesis of Optically Active Compounds , 1993 .

[21]  M. Holmquist Insights into the molecular basis for fatty acyl specificities of lipases from Geotrichum candidum and Candida rugosa. , 1998, Chemistry and physics of lipids.

[22]  Palle Schneider,et al.  Directed evolution of a fungal peroxidase , 1999, Nature Biotechnology.

[23]  Gary Siuzdak,et al.  Measurement of Enantiomeric Excess by Kinetic Resolution and Mass Spectrometry. , 1999, Angewandte Chemie.

[24]  C. Harwood,et al.  Construction and use of a new broad-host-range lacZ transcriptional fusion vector, pHRP309, for gram- bacteria. , 1993, Gene.

[25]  Frances H. Arnold,et al.  Exploring Nonnatural Evolutionary Pathways by Saturation Mutagenesis: Rapid Improvement of Protein Function , 1999, Journal of Molecular Evolution.

[26]  G. Sheldrake,et al.  Developments in the commercial manufacture and applications of optically active compounds , 1995 .

[27]  D. Goeddel,et al.  A method for random mutagenesis of a defined DNA segment using a modified polymerase chain reaction , 1989 .

[28]  Satinder Ahuja,et al.  Chiral separations : applications and technology , 1997 .

[29]  D. V. van Aalten,et al.  Essential dynamics of lipase binding sites: the effect of inhibitors of different chain length. , 1997, Protein engineering.

[30]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[31]  Eric N. Jacobsen,et al.  Comprehensive asymmetric catalysis , 1999 .

[32]  M. Nardini,et al.  University of Groningen Crystal structure of Pseudomonas aeruginosa lipase in the open conformation-The prototype for family I.1 of bacterial lipases Nardini, , 2000 .

[33]  J. Rowe,et al.  Enhancement of transformation in Pseudomonas aeruginosa PAO1 by Mg2+ and heat. , 1997, BioTechniques.

[34]  J. Zou,et al.  Improved methods for building protein models in electron density maps and the location of errors in these models. , 1991, Acta crystallographica. Section A, Foundations of crystallography.

[35]  B. Dijkstra,et al.  Bacterial biocatalysts: molecular biology, three-dimensional structures, and biotechnological applications of lipases. , 1999, Annual review of microbiology.

[36]  O. Olsen,et al.  Computational studies of the activation of lipases and the effect of a hydrophobic environment. , 1997, Protein engineering.

[37]  Manfred T. Reetz,et al.  Creation of Enantioselective Biocatalysts for Organic Chemistry by In Vitro Evolution , 1997 .

[38]  J. Mattick,et al.  Construction of improved vectors for protein production in Pseudomonas aeruginosa. , 1996, Gene.

[39]  R. Verger,et al.  Lipases: Interfacial Enzymes with Attractive Applications. , 1998, Angewandte Chemie.

[40]  F. Arnold,et al.  Directed evolution of enzyme catalysts. , 1997, Trends in biotechnology.

[41]  M. Reetz,et al.  Microbial lipases form versatile tools for biotechnology. , 1998, Trends in biotechnology.

[42]  Joel L. Sussman,et al.  The α/β hydrolase fold , 1992 .

[43]  K. Hult,et al.  Computer modeling of substrate binding to lipases from Rhizomucor miehei, Humicola lanuginosa, and Candida rugosa , 1994, Protein science : a publication of the Protein Society.

[44]  O. Edholm,et al.  Theoretical studies of Rhizomucor miehei lipase activation. , 1993, Protein engineering.

[45]  U. K. Laemmli,et al.  Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.

[46]  Manfred T Reetz,et al.  A Method for High-Throughput Screening of Enantioselective Catalysts. , 1999, Angewandte Chemie.

[47]  Frances H. Arnold,et al.  Directed evolution of a para-nitrobenzyl esterase for aqueous-organic solvents , 1996, Nature Biotechnology.

[48]  F. Arnold,et al.  Optimization of DNA shuffling for high fidelity recombination. , 1997, Nucleic acids research.

[49]  R. Bywater,et al.  Computational analysis of chain flexibility and fluctuations in Rhizomucor miehei lipase. , 1999, Protein engineering.

[50]  S. Suh,et al.  The crystal structure of a triacylglycerol lipase from Pseudomonas cepacia reveals a highly open conformation in the absence of a bound inhibitor. , 1997, Structure.

[51]  T. Kunkel,et al.  DNA polymerase fidelity and the polymerase chain reaction. , 1991, PCR methods and applications.