Photochemical Acceleration of DNA Strand Displacement by Using Ultrafast DNA Photo‐crosslinking
暂无分享,去创建一个
Kenzo Fujimoto | Shigetaka Nakamura | Satoshi Kobayashi | Satoshi Kobayashi | K. Fujimoto | Hirokazu Hashimoto | Shigetaka Nakamura | Hirokazu Hashimoto
[1] W. Heyer,et al. Strand displacement synthesis by yeast DNA polymerase ε , 2016, Nucleic acids research.
[2] R. Breaker,et al. Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes , 2005, Nature Biotechnology.
[3] C. Radding. Helical interactions in homologous pairing and strand exchange driven by RecA protein. , 1991, The Journal of biological chemistry.
[4] K. Fujimoto,et al. Sequence‐Specific DNA Photosplitting of Crosslinked DNAs Containing the 3‐Cyanovinylcarbazole Nucleoside by Using DNA Strand Displacement , 2016, Chembiochem : a European journal of chemical biology.
[5] F. Zhang,et al. Real-time monitoring of strand-displacement DNA amplification by a contactless electrochemical microsystem using interdigitated electrodes. , 2012, Lab on a chip.
[6] Joseph M. Schaeffer,et al. On the biophysics and kinetics of toehold-mediated DNA strand displacement , 2013, Nucleic acids research.
[7] V. Evdokimova,et al. The Major Messenger Ribonucleoprotein Particle Protein p50 (YB-1) Promotes Nucleic Acid Strand Annealing* , 2001, The Journal of Biological Chemistry.
[8] J. Macdonald,et al. Deoxyribozyme-based ligase logic gates and their initial circuits. , 2005, Journal of the American Chemical Society.
[9] S. Choi,et al. Activation of DNA strand exchange by cationic comb-type copolymers: effect of cationic moieties of the copolymers , 2007, Nucleic acids research.
[10] Y. Yoshimura,et al. Ultrafast reversible photo-cross-linking reaction: toward in situ DNA manipulation. , 2008, Organic letters.
[11] T. LaBean,et al. One-pot assembly of a hetero-dimeric DNA origami from chip-derived staples and double-stranded scaffold. , 2013, ACS nano.
[12] Feng Li,et al. Regulation of DNA Strand Displacement Using an Allosteric DNA Toehold. , 2016, Journal of the American Chemical Society.
[13] G. Seelig,et al. Enzyme-Free Nucleic Acid Logic Circuits , 2022 .
[14] Jing Zhu,et al. Toehold-mediated strand displacement reaction triggered isothermal DNA amplification for highly sensitive and selective fluorescent detection of single-base mutation. , 2014, Biosensors & bioelectronics.
[15] Hieu Bui,et al. Analog Computation by DNA Strand Displacement Circuits. , 2016, ACS synthetic biology.
[16] Lulu Qian,et al. Supporting Online Material Materials and Methods Figs. S1 to S6 Tables S1 to S4 References and Notes Scaling up Digital Circuit Computation with Dna Strand Displacement Cascades , 2022 .
[17] Friedrich C. Simmel,et al. Nukleinsäure‐basierte molekulare Werkzeuge , 2011 .
[18] D. Y. Zhang,et al. Control of DNA strand displacement kinetics using toehold exchange. , 2009, Journal of the American Chemical Society.
[19] Kenzo Fujimoto,et al. Details of the ultrafast DNA photo-cross-linking reaction of 3-cyanovinylcarbazole nucleoside: cis-trans isomeric effect and the application for SNP-based genotyping. , 2013, Journal of the American Chemical Society.
[20] L. Stols,et al. Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solution. , 1993, Biochemistry.
[21] Bernard Yurke,et al. Using DNA to Power Nanostructures , 2003, Genetic Programming and Evolvable Machines.
[22] K. Mullis,et al. Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. , 1987, Methods in enzymology.
[23] K. Fujimoto,et al. Creation of DNA array structure equipped with heat resistance by ultrafast photocrosslinking , 2014 .
[24] A. Maruyama,et al. DNA strand exchange reaction activated by cationic comb-type copolymers having ureido groups. , 2014, Biomaterials science.
[25] Robert M. Dirks,et al. Triggered amplification by hybridization chain reaction. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[26] A. Maruyama,et al. Simple basic peptides activate DNA strand exchange , 2003 .
[27] Kenzo Fujimoto,et al. RNA fluorescence in situ hybridization using 3-cyanovinylcarbazole modified oligodeoxyribonucleotides as photo-cross-linkable probes. , 2016, Bioorganic & medicinal chemistry letters.
[28] Friedrich C Simmel,et al. Nucleic acid based molecular devices. , 2011, Angewandte Chemie.
[29] T. Notomi,et al. Loop-mediated isothermal amplification of DNA. , 2000, Nucleic acids research.
[30] A. Suyama,et al. Stabilization of DNA nanostructures by photo-cross-linking , 2011 .
[31] P. Brown,et al. DNA strand exchange and selective DNA annealing promoted by the human immunodeficiency virus type 1 nucleocapsid protein , 1994, Journal of virology.
[32] G. Seelig,et al. Dynamic DNA nanotechnology using strand-displacement reactions. , 2011, Nature chemistry.
[33] Darko Stefanovic,et al. Behavior of polycatalytic assemblies in a substrate-displaying matrix. , 2006, Journal of the American Chemical Society.
[34] A. Turberfield,et al. A DNA-fuelled molecular machine made of DNA , 2022 .