Advances in Breeding for Mixed Cropping – Incomplete Factorials and the Producer/Associate Concept

Mixed cropping has been suggested as a resource-efficient approach to meet high produce demands while maintaining biodiversity and minimizing environmental impact. Current breeding programs do not select for enhanced general mixing ability (GMA) and neglect biological interactions within species mixtures. Clear concepts and efficient experimental designs, adapted to breeding for mixed cropping and encoded into appropriate statistical models, are lacking. Thus, a model framework for GMA and SMA (specific mixing ability) was established. Results of a simulation study showed that an incomplete factorial design combines advantages of two commonly used full factorials, and enables to estimate GMA, SMA, and their variances in a resource-efficient way. This model was extended to the Producer (Pr) and Associate (As) concept to exploit additional information based on fraction yields. It was shown that the Pr/As concept allows to characterize genotypes for their contribution to total mixture yield, and, when relating to plant traits, allows to describe biological interaction functions (BIF) in a mixed crop. Incomplete factorial designs show the potential to drastically improve genetic gain by testing an increased number of genotypes using the same amount of resources. The Pr/As concept can further be employed to maximize GMA in an informed and efficient way. The BIF of a trait can be used to optimize species ratios at harvest as well as to extend our understanding of competitive and facilitative interactions in a mixed plant community. This study provides an integrative methodological framework to promote breeding for mixed cropping.

[1]  T. Kuyper,et al.  Syndromes of production in intercropping impact yield gains , 2020, Nature Plants.

[2]  A. Charcosset,et al.  Revisiting hybrid breeding designs using genomic predictions: simulations highlight the superiority of incomplete factorials between segregating families over topcross designs , 2020, Theoretical and Applied Genetics.

[3]  J. Canadell,et al.  Acceleration of global N2O emissions seen from two decades of atmospheric inversion , 2019, Nature Climate Change.

[4]  I. Litrico,et al.  Which Recurrent Selection Scheme To Improve Mixtures of Crop Species? Theoretical Expectations , 2019, G3: Genes, Genomes, Genetics.

[5]  V. Allard,et al.  A generalized statistical framework to assess mixing ability from incomplete mixing designs using binary or higher order variety mixtures and application to wheat , 2019, Field Crops Research.

[6]  I. Litrico,et al.  Do we need specific breeding for legume-based mixtures? , 2019, Advances in Agronomy.

[7]  Mathias Starke Selektion von Stangenbohnensorten (Phaseolus vulgaris L.) für den Mischanbau mit Mais , 2018 .

[8]  V. Loïc,et al.  Yield gap analysis extended to marketable grain reveals the profitability of organic lentil-spring wheat intercrops , 2018, Agronomy for Sustainable Development.

[9]  Giovanny Covarrubias-Pazaran,et al.  Software update: Moving the R package sommer to multivariate mixed models for genome-assisted prediction , 2018, bioRxiv.

[10]  Emma Forst Développement de méthodes d'estimation de l'aptitude au mélange pour la prédiction des performances et la sélection de mélanges variétaux chez le blé tendre, et co-conception d'idéotypes de mélanges adaptés à l'agriculture biologique , 2018 .

[11]  E. S. Jensen,et al.  Does intercropping enhance yield stability in arable crop production? A meta-analysis , 2017 .

[12]  A. Walter,et al.  Specific interactions leading to transgressive overyielding in cover crop mixtures , 2017 .

[13]  C. Hoppe Entwicklung von Energiemaissorten für die Mischkultur mit Stangenbohnen , 2016 .

[14]  G. Covarrubias-Pazaran Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer , 2016, PloS one.

[15]  Eric Justes,et al.  Ecological principles underlying the increase of productivity achieved by cereal-grain legume intercrops in organic farming. A review , 2015, Agronomy for Sustainable Development.

[16]  Laura J. Scott,et al.  Joint Analysis of Psychiatric Disorders Increases Accuracy of Risk Prediction for Schizophrenia, Bipolar Disorder, and Major Depressive Disorder , 2015, American journal of human genetics.

[17]  D. Bates,et al.  Fitting Linear Mixed-Effects Models Using lme4 , 2014, 1406.5823.

[18]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[19]  S. Rahmstorf,et al.  Increase of extreme events in a warming world , 2011, Proceedings of the National Academy of Sciences.

[20]  William N. Venables,et al.  Modern Applied Statistics with S , 2010 .

[21]  G. Agegnehu,et al.  Yield performance and land-use efficiency of barley and faba bean mixed cropping in Ethiopian highlands , 2006 .

[22]  Y. Crozat,et al.  Interspecific Competition for Soil N and its Interaction with N2 Fixation, Leaf Expansion and Crop Growth in Pea–Barley Intercrops , 2006, Plant and Soil.

[23]  M. Smith,et al.  Uncovering Corn Adaptation to Intercrop with Bean by Selecting for System Yield in the Intercrop Environment , 2004 .

[24]  P. Annicchiarico,et al.  Interference effects in white clover genotypes grown as pure stands and binary mixtures with different grass species and varieties , 1994, Theoretical and Applied Genetics.

[25]  A. J. Wright Selection for improved yield in inter-specific mixtures or intercrops , 1985, Theoretical and Applied Genetics.

[26]  M. Zimmermann Breeding for yield, in mixtures of common beans (Phaseolus vulgaris L.) and maize (Zea mays L.) , 2004, Euphytica.

[27]  B. Guldbrandtsen,et al.  A comparison of bivariate and univariate QTL mapping in livestock populations , 2003, Genetics Selection Evolution.

[28]  P. Annicchiarico Breeding white clover for increased ability to compete with associated grasses , 2003, The Journal of Agricultural Science.

[29]  Christina Gloeckner,et al.  Modern Applied Statistics With S , 2003 .

[30]  E. S. Jensen,et al.  Evaluating pea and barley cultivars for complementarity in intercropping at different levels of soil N availability , 2001 .

[31]  P. Ambus,et al.  INTERSPECIFIC COMPETITION, N USE AND INTERFERENCE WITH WEEDS IN PEA-BARLEY INTERCROPPING , 2001 .

[32]  R. Kempton,et al.  Adjustment for Competition Between Genotypes in Single‐Row‐Plot Trials of Winter Wheat (Triticum aestivum) , 1994 .

[33]  K. Meyer,et al.  Estimating variances and covariances for multivariate animal models by restricted maximum likelihood , 1991, Genetics Selection Evolution.

[34]  D. Goldberg,et al.  Competitive effect and response in four annual plants , 1987 .

[35]  W. R. Stern,et al.  Maize/cowpea intercrop system: effect of nitrogen fertilizer on productivity and efficiency , 1986 .

[36]  C. Elton Interspecific Competition , 1957, Nature.