Protein-DNA recognition: new perspectives and underlying themes

[1]  N C Seeman,et al.  RNA double-helical fragments at atomic resolution. II. The crystal structure of sodium guanylyl-3',5'-cytidine nonahydrate. , 1976, Journal of molecular biology.

[2]  P. S. Kim,et al.  Modular structure of transcription factors: Implications for gene regulation , 1991, Cell.

[3]  M C Mossing,et al.  Thermodynamic origins of specificity in the lac repressor-operator interaction. Adaptability in the recognition of mutant operator sites. , 1985, Journal of molecular biology.

[4]  N. Seeman,et al.  Sequence-specific Recognition of Double Helical Nucleic Acids by Proteins (base Pairs/hydrogen Bonding/recognition Fidelity/ion Binding) , 2022 .

[5]  M. Yarus.  Recognition of nucleotide sequences. , 1969, Annual review of biochemistry.

[6]  D. K. Hawley,et al.  Compilation and analysis of Escherichia coli promoter DNA sequences. , 1983, Nucleic acids research.

[7]  P. V. von Hippel,et al.  Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions. , 1981, Biochemistry.

[8]  M. Ptashne,et al.  Specific Binding of the λ Phage Repressor to λ DNA , 1967, Nature.

[9]  R E Glass,et al.  Visualization of single molecules of RNA polymerase sliding along DNA. , 1993, Science.

[10]  R. S. Spolar,et al.  Hydrophobic effect in protein folding and other noncovalent processes involving proteins. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[11]  T. Lohman,et al.  Ion effects on ligand-nucleic acid interactions. , 1976, Journal of molecular biology.

[12]  W. Gilbert,et al.  ISOLATION OF THE LAC REPRESSOR , 1966, Proceedings of the National Academy of Sciences of the United States of America.

[13]  T. Alber.  How GCN4 binds DNA , 1993, Current Biology.

[14]  P. V. von Hippel,et al.  Facilitated Target Location in Biological Systems* , 2022 .

[15]  P. V. von Hippel,et al.  Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. , 1987, Journal of molecular biology.

[16]  P. V. von Hippel,et al.  Direct measurement of association constants for the binding of Escherichia coli lac repressor to non-operator DNA. , 1977, Biochemistry.

[17]  P. V. von Hippel,et al.  DNA-protein interactions. , 1972, Annual review of biochemistry.

[18]  P. Dehaseth,et al.  Nonspecific interaction of lac repressor with DNA: an association reaction driven by counterion release. , 1977, Biochemistry.

[19]  S. Harrison,et al.  DNA recognition by proteins with the helix-turn-helix motif. , 1990, Annual review of biochemistry.

[20]  J. Ha,et al.  Role of the hydrophobic effect in stability of site-specific protein-DNA complexes. , 1989, Journal of molecular biology.

[21]  R. Sauer,et al.  Transcription factors: structural families and principles of DNA recognition. , 1992, Annual review of biochemistry.

[22]  A. Joachimiak,et al.  Crystal structure of trp represser/operator complex at atomic resolution , 1988, Nature.

[23]  R. S. Spolar,et al.  Coupling of local folding to site-specific binding of proteins to DNA. , 1994, Science.

[24]  P. Ross,et al.  Thermodynamics of Cro protein-DNA interactions. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[25]  T. D. Schneider,et al.  Information content of binding sites on nucleotide sequences. , 1986, Journal of molecular biology.

[26]  J. Monod,et al.  Genetic regulatory mechanisms in the synthesis of proteins. , 1961, Journal of molecular biology.

[27]  J M Sturtevant,et al.  Heat capacity and entropy changes in processes involving proteins. , 1977, Proceedings of the National Academy of Sciences of the United States of America.

[28]  P. V. von Hippel,et al.  On the specificity of DNA-protein interactions. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[29]  B. Matthews,et al.  The molecular basis of DNA–protein recognition inferred from the structure of cro repressor , 1982, Nature.