A novel mutation tolerant padlock probe design for multiplexed detection of hypervariable RNA viruses

[1]  J. Albert,et al.  Padlock Probe Assay for Detection and Subtyping of Seasonal Influenza. , 2018, Clinical chemistry.

[2]  D. Dou,et al.  Analysis of IAV Replication and Co-infection Dynamics by a Versatile RNA Viral Genome Labeling Method. , 2017, Cell reports.

[3]  T. Abdisa,et al.  Review on Newcastle Disease of Poultry and its Public Health Importance , 2017 .

[4]  T. Punga,et al.  Simultaneous Single-Cell In Situ Analysis of Human Adenovirus Type 5 DNA and mRNA Expression Patterns in Lytic and Persistent Infection , 2017, Journal of Virology.

[5]  Mats Nilsson,et al.  Sensitive and inexpensive digital DNA analysis by microfluidic enrichment of rolling circle amplified single-molecules , 2017, Nucleic acids research.

[6]  Selma Souf.  Recent advances in diagnostic testing for viral infections , 2016, Bioscience Horizons: The International Journal of Student Research.

[7]  R. Sanjuán,et al.  Mechanisms of viral mutation , 2016, Cellular and Molecular Life Sciences.

[8]  Xinglong Wang,et al.  Molecular characterization of a Class I Newcastle disease virus strain isolated from a pigeon in China , 2016, Avian pathology : journal of the W.V.P.A.

[9]  P. Gong,et al.  Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation , 2016, Proceedings of the National Academy of Sciences.

[10]  C. Afonso,et al.  Temporal, geographic, and host distribution of avian paramyxovirus 1 (Newcastle disease virus). , 2016, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[11]  M. Nilsson,et al.  Highly specific DNA detection employing ligation on suspension bead array readout. , 2015, New biotechnology.

[12]  J. Blomberg,et al.  Detection of Rotavirus Using Padlock Probes and Rolling Circle Amplification , 2014, PloS one.

[13]  C. Basler,et al.  The L Gene of J Paramyxovirus Plays a Critical Role in Viral Pathogenesis , 2013, Journal of Virology.

[14]  Dawid Nidzworski,et al.  Detection and differentiation of Newcastle disease virus and influenza virus by using duplex real-time PCR. , 2013, Acta biochimica Polonica.

[15]  M. Strømme,et al.  Detection of Rifampicin Resistance in Mycobacterium tuberculosis by Padlock Probes and Magnetic Nanobead-Based Readout , 2013, PloS one.

[16]  C. Howard,et al.  Emerging virus diseases: can we ever expect the unexpected? , 2012, Emerging Microbes & Infections.

[17]  G. Allan,et al.  Development of a novel real-time PCR-based strategy for simple and rapid molecular pathotyping of Newcastle disease virus , 2012, Archives of Virology.

[18]  Mats Nilsson,et al.  Colorimetric Nucleic Acid Testing Assay for RNA Virus Detection Based on Circle-to-Circle Amplification of Padlock Probes , 2011, Journal of Clinical Microbiology.

[19]  Corrie Brown,et al.  Newcastle disease , 2011, Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc.

[20]  Anne E Carpenter,et al.  Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software , 2011, Bioinform..

[21]  R. Irvine,et al.  Development of an L gene real-time reverse-transcription PCR assay for the detection of avian paramyxovirus type 1 RNA in clinical samples , 2010, Archives of Virology.

[22]  Geoffrey J. Barton,et al.  Jalview Version 2—a multiple sequence alignment editor and analysis workbench , 2009, Bioinform..

[23]  H. Guzmán,et al.  Biological and Phylogenetic Characterization of Pigeon Paramyxovirus Serotype 1 Circulating in Wild North American Pigeons and Doves , 2008, Journal of Clinical Microbiology.

[24]  D. Whiley,et al.  False-Negative Results in Nucleic Acid Amplification Tests—Do We Need to Routinely Use Two Genetic Targets in all Assays to Overcome Problems Caused by Sequence Variation? , 2008 .

[25]  D. Suarez,et al.  Characterization of Class I Newcastle Disease Virus Isolates from Hong Kong Live Bird Markets and Detection Using Real-Time Reverse Transcription-PCR , 2007, Journal of Clinical Microbiology.

[26]  Mats Nilsson,et al.  Digital quantification using amplified single-molecule detection , 2006, Nature Methods.

[27]  E. Somogyi,et al.  Third genome size category of avian paramyxovirus serotype 1 (Newcastle disease virus) and evolutionary implications. , 2006, Virus research.

[28]  Santiago F. Elena,et al.  Adaptive Value of High Mutation Rates of RNA Viruses: Separating Causes from Consequences , 2005, Journal of Virology.

[29]  M. Falcon.  Exotic Newcastle disease , 2004 .

[30]  Fredrik Dahl,et al.  Circle-to-circle amplification for precise and sensitive DNA analysis. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[31]  Shao Chaogang,et al.  Differentiation of velogenic, mesogenic and lentogenic strains of Newcastle disease virus by multiplex RT PCR , 2003 .

[32]  U. Landegren,et al.  Signal amplification of padlock probes by rolling circle replication. , 1998, Nucleic acids research.

[33]  E. Southern,et al.  Effects of base mismatches on joining of short oligodeoxynucleotides by DNA ligases. , 1997, Nucleic acids research.

[34]  Francis Barany,et al.  Improving the fidelity of Thermus thermophilus DNA ligase , 1996 .

[35]  L. A. Currie,et al.  Nomenclature in evaluation of analytical methods including detection and quantification capabilities (IUPAC Recommendations 1995) , 1995 .

[36]  U Landegren,et al.  Padlock probes: circularizing oligonucleotides for localized DNA detection. , 1994, Science.

[37]  G. Campbell,et al.  Characterisation of an antigenically unusual virus responsible for two outbreaks of Newcastle disease in the Republic of Ireland in 1990 , 1992, Veterinary Record.

[38]  Ik-Hwan Kim,et al.  Validation of a real-time RT-PCR method to quantify Newcastle Disease Virus (NDV) titer and comparison with other quantifiable methods. , 2011, Journal of microbiology and biotechnology.

[39]  C. Afonso,et al.  Newcastle disease: evolution of genotypes and the related diagnostic challenges. , 2010, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[40]  F. Barany,et al.  Improving the fidelity of Thermus thermophilus DNA ligase. , 1996, Nucleic acids research.